Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013287

Physical Location & Seq

Genomic Coordinates Reverse (-)

55836040 .. 55839977

Gene Structure 3938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0390500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGAAAACGAAGACGATGCTAAGTCGTCCACAAAATCATCCACAAAACCATCATCTAAAGATGCTGAAGACGCTTCCAAGACATCTACAAAGTCATCGACAAAGCCATTATCCAAAGGTACTGATTCGGATGCTGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGTTGGTTCAGATAATGAAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAGCCGTCAACCAAAGGTGCCGATTCAGATGTTGCAGACGCATCCAAGACCTCTACAAAGTCATCGACAAAACCGTCATCCAAAGGTGCCAATTTAGATGCTGAAGACGCATCCAAGACGTCTACAAAGTCATCGACAAAACCACCACCCAAAGGTGCCGCTTCGGATGCTGAAGACGCATCTAAGACCTCTACAAAGCCGTCATCCAAAAGTGCCGATTCGGATGCTGAAGACGCATCCAAGGCATCTACAAAGTCATCGACAAAACCATCATCCAAAGGTGCTGGTTCAGATAATGAAGACGCGTCCAAGACATCTACAAAGTCATCGACAAAGCCATCATCCAAAGGTGCTGATTCGAATAATGAAGACGCATCCAAGACGTCTACAAAGTCATCAACAAAGCCATCATCCAAAGGTGCTGGTTCGGATAATGAAGATGGTCAAACCAAGACGTCCACAAAGTCATCGACAAAGCCATCATCCAAAGGTACTGGTTCAGATGATGAAGCCAAGACATCCACAAAGTCATCAACAAAGCCGTCATCTCAAGGCTCTAAAGATACCGCAAAGTCAACATCAAAGTCGTCATCCGGCGGTGGTGGTAAGGAGTCAGACAAAGTCGAAATCAGCGAGAGGAAAGCAGGAAAGTCGTCAGAAGGGGCCCACTCTGAGAATAAGGACGAGGTGCCATCGACTAAAGAGATCATGAGCAGCGCGAAGTTGGTGGCGTCGGCGGCGCAGGGGGAGAATGTGGAGAAGGCCGAGTTAGCGGGGGCTGCGAGCAACCTTCTCGGCGCCGCCAATCACTATGGCAAGCTTGAGCAATCGGGGTTTGGCAAGTATCTGGATAAGGCTGAGGATATGCTCCGTAAGATGGCCAAGAAGTCTGATTCTGAGTCCGGCACCAGTGACGATAAGACTAAGAAGTCTGGCGCCGGTGATAGTAAAACTAAGAAGTCTGGCACCGGTGACAGTAAGACTAAGAAGTCTGGTGCGAGTGACGGTGAAGGTGATGAGGACAAGCTGAAGAAAAAATCGGAGAAGAAGCCAGCTGCCAAAGATGATGAGGAAGAAGGTGGTGGTGGTGGGTTTGGAGATATCTTGAAGATGGCTAAAGCCCCCTGCATGGCCCCCAACAAAGTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

463

Amino Acids

46.8

Weight (kDa)

8.99

Isoelectric Point (pI)

39.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20130 AT5G20130
fragaria_vesca	FvH4_3g00960
malus_domestica	MD05G1358000.v1.1 MD10G1331900.v1.1
prunus_persica	Prupe.4G010200_v2.0.a1
pyrus_communis	pycom05g32380
rosa_chinensis	RchiOBHm_Chr5g0001481
rosa_laevigata	RLG00000030932
rosa_multiflora	Rmu_co8090336.1_g000001 Rmu_sc0003749.1_g000010
rosa_roxburghii	Rroxscaffold_1G00074910
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011500 Rh5BG014000 Rh5CG012500 Rh5DG011700
rosa_wichuraiana	Rw5G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	244, 313, 1168, 1228
AatII	GACGTC	4 cut(s)	155, 362, 626, 698
AccB1I	GGYRCC	8 cut(s)	257, 326, 395, 928, 1037, 1145, 1175, 1205
AccI	GTMKAC	3 cut(s)	155, 362, 626
AccII	CGCG	2 cut(s)	545, 959
AciI	CCGC	6 cut(s)	399, 807, 837, 977, 1013, 1041
AcoI	YGGCCR	1 cut(s)	1119
AcuI	CTGAAG	6 cut(s)	87, 156, 363, 432, 489, 1289
AcyI	GRCGYC	7 cut(s)	152, 359, 623, 695, 971, 1038, 1176
AfaI	GTAC	2 cut(s)	121, 733
AfiI	CCNNNNNNNGG	3 cut(s)	392, 1117, 1369
AflIII	ACRYGT	1 cut(s)	543
AgeI	ACCGGT	1 cut(s)	1208
AgsI	TTSAA	1 cut(s)	1348
AluBI	AGCT	3 cut(s)	1060, 1267, 1295
AluI	AGCT	3 cut(s)	1060, 1267, 1295
AoxI	GGCC	4 cut(s)	903, 1002, 1119, 1371
ApaI	GGGCCC	1 cut(s)	907
ApeKI	GCWGC	3 cut(s)	954, 1019, 1295
AsiGI	ACCGGT	1 cut(s)	1208
AspLEI	GCGC	4 cut(s)	959, 982, 1040, 1178
AspS9I	GGNCC	3 cut(s)	903, 904, 1372
AsuHPI	GGTGA	4 cut(s)	1193, 1223, 1259, 1265
AsuII	TTCGAA	1 cut(s)	599
BaeGI	GKGCMC	1 cut(s)	907
BalI	TGGCCA	1 cut(s)	1121
BanI	GGYRCC	8 cut(s)	257, 326, 395, 928, 1037, 1145, 1175, 1205
BanII	GRGCYC	1 cut(s)	907
BbsI	GAAGAC	9 cut(s)	18, 75, 144, 213, 351, 420, 477, 546, 615
BbvCI	CCTCAGC	1 cut(s)	1098
BbvI	GCAGC	3 cut(s)	966, 1006, 1282
BceAI	ACGGC	3 cut(s)	229, 424, 766
BcgI	CGANNNNNNTGC	7 cut(s)	33, 446, 480, 873, 907, 1015, 1049
BfoI	RGCGCY	2 cut(s)	1041, 1179
BisI	GCNGC	6 cut(s)	399, 955, 978, 1020, 1041, 1296
BlsI	GCNGC	6 cut(s)	400, 956, 979, 1021, 1042, 1297
BmgT120I	GGNCC	3 cut(s)	903, 904, 1372
BpiI	GAAGAC	9 cut(s)	18, 75, 144, 213, 351, 420, 477, 546, 615
Bpu10I	CCTNAGC	1 cut(s)	1098
Bpu14I	TTCGAA	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	774, 1082
BsaHI	GRCGYC	7 cut(s)	152, 359, 623, 695, 971, 1038, 1176
BsaJI	CCNNGG	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	1208
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 1117, 1369
Bse118I	RCCGGY	2 cut(s)	1178, 1208
Bse1I	ACTGG	2 cut(s)	739, 1149
BseDI	CCNNGG	1 cut(s)	480
BseLI	CCNNNNNNNGG	3 cut(s)	392, 1117, 1369
BseMII	CTCAG	3 cut(s)	903, 1089, 1128
BseNI	ACTGG	2 cut(s)	739, 1149
BseSI	GKGCMC	1 cut(s)	907
BseXI	GCAGC	3 cut(s)	966, 1006, 1282
Bsh1236I	CGCG	2 cut(s)	545, 959
BshFI	GGCC	4 cut(s)	905, 1004, 1121, 1373
BshNI	GGYRCC	8 cut(s)	257, 326, 395, 928, 1037, 1145, 1175, 1205
BshTI	ACCGGT	1 cut(s)	1208
BsiSI	CCGG	4 cut(s)	834, 1143, 1179, 1209
BslI	CCNNNNNNNGG	3 cut(s)	392, 1117, 1369
BsnI	GGCC	4 cut(s)	905, 1004, 1121, 1373
Bsp119I	TTCGAA	1 cut(s)	599
Bsp120I	GGGCCC	1 cut(s)	903
Bsp1286I	GDGCHC	1 cut(s)	907
Bsp143I	GATC	1 cut(s)	945
BspACI	CCGC	6 cut(s)	399, 807, 837, 977, 1013, 1041
BspANI	GGCC	4 cut(s)	905, 1004, 1121, 1373
BspCNI	CTCAG	3 cut(s)	904, 1090, 1129
BspFNI	CGCG	2 cut(s)	545, 959
BspHI	TCATGA	1 cut(s)	948
BspT104I	TTCGAA	1 cut(s)	599
BspT107I	GGYRCC	8 cut(s)	257, 326, 395, 928, 1037, 1145, 1175, 1205
BsrFI	RCCGGY	2 cut(s)	1178, 1208
BsrI	ACTGG	2 cut(s)	739, 1149
BssAI	RCCGGY	2 cut(s)	1178, 1208
BssECI	CCNNGG	1 cut(s)	480
BssMI	GATC	1 cut(s)	945
BssNI	GRCGYC	7 cut(s)	152, 359, 623, 695, 971, 1038, 1176
BssT1I	CCWWGG	1 cut(s)	480
Bst4CI	ACNGT	3 cut(s)	315, 1217, 1247
BstACI	GRCGYC	7 cut(s)	152, 359, 623, 695, 971, 1038, 1176
BstBI	TTCGAA	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	1024, 1058, 1293
BstDEI	CTNAG	8 cut(s)	21, 423, 912, 1098, 1137, 1164, 1194, 1224
BstFNI	CGCG	2 cut(s)	545, 959
BstH2I	RGCGCY	2 cut(s)	1041, 1179
BstHHI	GCGC	4 cut(s)	959, 982, 1040, 1178
BstKTI	GATC	1 cut(s)	948
BstMBI	GATC	1 cut(s)	945
BstSLI	GKGCMC	1 cut(s)	907
BstUI	CGCG	2 cut(s)	545, 959
BstV1I	GCAGC	3 cut(s)	966, 1006, 1282
BstV2I	GAAGAC	9 cut(s)	18, 75, 144, 213, 351, 420, 477, 546, 615
BsuRI	GGCC	4 cut(s)	905, 1004, 1121, 1373
BtsIMutI	CAGTG	1 cut(s)	1156
Cac8I	GCNNGC	3 cut(s)	1024, 1058, 1293
CciI	TCATGA	1 cut(s)	948
CfoI	GCGC	4 cut(s)	959, 982, 1040, 1178
Cfr10I	RCCGGY	2 cut(s)	1178, 1208
Cfr13I	GGNCC	3 cut(s)	903, 904, 1372
Csp6I	GTAC	2 cut(s)	120, 732
CspAI	ACCGGT	1 cut(s)	1208
CviAII	CATG	2 cut(s)	949, 1369
CviQI	GTAC	2 cut(s)	120, 732
DdeI	CTNAG	8 cut(s)	21, 423, 912, 1098, 1137, 1164, 1194, 1224
DinI	GGCGCC	2 cut(s)	1039, 1177
DpnI	GATC	1 cut(s)	947
DpnII	GATC	1 cut(s)	945
DrdI	GACNNNNNNGTC	4 cut(s)	244, 313, 1168, 1228
DseDI	GACNNNNNNGTC	4 cut(s)	244, 313, 1168, 1228
EaeI	YGGCCR	1 cut(s)	1119
Eco130I	CCWWGG	1 cut(s)	480
Eco24I	GRGCYC	1 cut(s)	907
Eco32I	GATATC	1 cut(s)	1342
Eco57I	CTGAAG	6 cut(s)	87, 156, 363, 432, 489, 1289
EcoO109I	RGGNCCY	1 cut(s)	903
EcoRV	GATATC	1 cut(s)	1342
EcoT14I	CCWWGG	1 cut(s)	480
EcoT38I	GRGCYC	1 cut(s)	907
EgeI	GGCGCC	2 cut(s)	1039, 1177
EheI	GGCGCC	2 cut(s)	1039, 1177
ErhI	CCWWGG	1 cut(s)	480
FaeI	CATG	2 cut(s)	952, 1372
FaiI	YATR	4 cut(s)	950, 1053, 1106, 1370
FatI	CATG	2 cut(s)	948, 1368
FauI	CCCGC	1 cut(s)	1006
FblI	GTMKAC	3 cut(s)	155, 362, 626
Fnu4HI	GCNGC	6 cut(s)	399, 955, 978, 1020, 1041, 1296
FriOI	GRGCYC	1 cut(s)	907
Fsp4HI	GCNGC	6 cut(s)	399, 955, 978, 1020, 1041, 1296
GlaI	GCGC	4 cut(s)	958, 981, 1039, 1177
GluI	GCNGC	6 cut(s)	399, 955, 978, 1020, 1041, 1296
HaeII	RGCGCY	2 cut(s)	1041, 1179
HaeIII	GGCC	4 cut(s)	905, 1004, 1121, 1373
HapII	CCGG	4 cut(s)	834, 1143, 1179, 1209
HhaI	GCGC	4 cut(s)	959, 982, 1040, 1178
Hin1I	GRCGYC	7 cut(s)	152, 359, 623, 695, 971, 1038, 1176
Hin1II	CATG	2 cut(s)	952, 1372
Hin6I	GCGC	4 cut(s)	957, 980, 1038, 1176
HinP1I	GCGC	4 cut(s)	957, 980, 1038, 1176
HincII	GTYRAC	2 cut(s)	249, 816
HindII	GTYRAC	2 cut(s)	249, 816
HindIII	AAGCTT	1 cut(s)	1058
HinfI	GANTC	7 cut(s)	125, 263, 458, 596, 851, 1133, 1139
HpaII	CCGG	4 cut(s)	834, 1143, 1179, 1209
HphI	GGTGA	4 cut(s)	1193, 1223, 1259, 1265
Hpy166II	GTNNAC	7 cut(s)	30, 156, 249, 363, 627, 699, 816
Hpy188III	TCNNGA	3 cut(s)	949, 1088, 1345
Hpy8I	GTNNAC	7 cut(s)	30, 156, 249, 363, 627, 699, 816
Hpy99I	CGWCG	1 cut(s)	976
HpyAV	CCTTC	5 cut(s)	893, 994, 1040, 1244, 1310
HpyCH4III	ACNGT	3 cut(s)	315, 1217, 1247
HpyCH4IV	ACGT	4 cut(s)	152, 359, 623, 695
HpyCH4V	TGCA	2 cut(s)	275, 1368
HpyF3I	CTNAG	8 cut(s)	21, 423, 912, 1098, 1137, 1164, 1194, 1224
HpySE526I	ACGT	4 cut(s)	152, 359, 623, 695
Hsp92I	GRCGYC	7 cut(s)	152, 359, 623, 695, 971, 1038, 1176
Hsp92II	CATG	2 cut(s)	952, 1372
HspAI	GCGC	4 cut(s)	957, 980, 1038, 1176
KasI	GGCGCC	2 cut(s)	1037, 1175
Kzo9I	GATC	1 cut(s)	945
LmnI	GCTCC	1 cut(s)	1113
Lsp1109I	GCAGC	3 cut(s)	966, 1006, 1282
MaeII	ACGT	4 cut(s)	152, 359, 623, 695
MaeIII	GTNAC	3 cut(s)	1151, 1211, 1241
MalI	GATC	1 cut(s)	947
MboI	GATC	1 cut(s)	945
MhlI	GDGCHC	1 cut(s)	907
MlsI	TGGCCA	1 cut(s)	1121
MluCI	AATT	1 cut(s)	331
MluI	ACGCGT	1 cut(s)	543
MluNI	TGGCCA	1 cut(s)	1121
Mly113I	GGCGCC	2 cut(s)	1038, 1176
MlyI	GAGTC	2 cut(s)	860, 1148
MnlI	CCTC	8 cut(s)	232, 301, 439, 870, 919, 1093, 1252, 1303
Mox20I	TGGCCA	1 cut(s)	1121
MscI	TGGCCA	1 cut(s)	1121
Msp20I	TGGCCA	1 cut(s)	1121
MspA1I	CMGCKG	1 cut(s)	1295
MspI	CCGG	4 cut(s)	834, 1143, 1179, 1209
MvnI	CGCG	2 cut(s)	545, 959
NarI	GGCGCC	2 cut(s)	1038, 1176
NdeII	GATC	1 cut(s)	945
NlaIII	CATG	2 cut(s)	952, 1372
NmeAIII	GCCGAG	2 cut(s)	1014, 1030
NmuCI	GTSAC	3 cut(s)	1151, 1211, 1241
NspV	TTCGAA	1 cut(s)	599
PagI	TCATGA	1 cut(s)	948
PcsI	WCGNNNNNNNCGW	3 cut(s)	242, 311, 870
PfeI	GAWTC	5 cut(s)	125, 263, 458, 596, 1133
PflFI	GACNNNGTC	1 cut(s)	860
PinAI	ACCGGT	1 cut(s)	1208
PkrI	GCNGC	6 cut(s)	400, 956, 979, 1021, 1042, 1297
PleI	GAGTC	2 cut(s)	859, 1147
PluTI	GGCGCC	2 cut(s)	1041, 1179
PpsI	GAGTC	2 cut(s)	859, 1147
PspOMI	GGGCCC	1 cut(s)	903
PspPI	GGNCC	3 cut(s)	903, 904, 1372
PsyI	GACNNNGTC	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	1295
RsaI	GTAC	2 cut(s)	121, 733
RsaNI	GTAC	2 cut(s)	120, 732
SatI	GCNGC	6 cut(s)	399, 955, 978, 1020, 1041, 1296
Sau3AI	GATC	1 cut(s)	945
Sau96I	GGNCC	3 cut(s)	903, 904, 1372
SchI	GAGTC	2 cut(s)	860, 1148
SduI	GDGCHC	1 cut(s)	907
SfoI	GGCGCC	2 cut(s)	1039, 1177
SfuI	TTCGAA	1 cut(s)	599
SgrAI	CRCCGGYG	2 cut(s)	1178, 1208
SmlI	CTYRAG	2 cut(s)	789, 1061
SmoI	CTYRAG	2 cut(s)	789, 1061
Sse9I	AATT	1 cut(s)	331
SsiI	CCGC	6 cut(s)	399, 807, 837, 977, 1013, 1041
SspDI	GGCGCC	2 cut(s)	1037, 1175
StyI	CCWWGG	1 cut(s)	480
TaaI	ACNGT	3 cut(s)	315, 1217, 1247
TaiI	ACGT	4 cut(s)	155, 362, 626, 698
TasI	AATT	1 cut(s)	331
TauI	GCSGC	3 cut(s)	401, 980, 1043
TfiI	GAWTC	5 cut(s)	125, 263, 458, 596, 1133
TscAI	CASTG	1 cut(s)	1156
TseFI	GTSAC	3 cut(s)	1151, 1211, 1241
TseI	GCWGC	3 cut(s)	954, 1019, 1295
Tsp45I	GTSAC	3 cut(s)	1151, 1211, 1241
TspDTI	ATGAA	5 cut(s)	219, 552, 621, 690, 762
TspGWI	ACGGA	1 cut(s)	1100
TspRI	CASTG	1 cut(s)	1156
Tth111I	GACNNNGTC	1 cut(s)	860
XmiI	GTMKAC	3 cut(s)	155, 362, 626
ZraI	GACGTC	4 cut(s)	153, 360, 624, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.