FvH4_3g00960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013287
Physical Location & Seq
Forward (+)
482975 .. 485249
2275 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00960.t1

Sequence Viewer

Length: 615 bp
ATGGCGCAGCTTCTCATCAACCTAAGCTTGCCGTCCCCAACCTCATTTCAGTCGACTCGTCACCTCCCCACAACTCGCTCCCGCCAAAATGAAGCTGCCCAAGAATGGTCGTCCCTGCTTCACAACCTCAAGTCTCACGGCAGATTCTCTTGCCTTTTCTCAGGCAATCGCAGAGAGGACCAAGCACGAAAAGCATTAGAAGGTGCCCTGGGTGGAAAGAGAGATGAATTTGAGAAATGGGACAAAGAGATTAAGAAAAGAGAGGAGGTGGGTGGAGGCAGTAGTGGTGGTGGAGGGGGCTGGTTTGGGTGGGGCAGACGCTTCGGGTGGTCCAACGGTGATGATTTCTGGCAAGAAGCACAACAAGCAAGTCTTGCTGTCTTAGGAATTTTGGTCATGTATCTAATTGTTGTGAAAGGAGAGCTGATGCTTGCTGTCGTCTTCAATCCACTGTTGTATGCCTTGCGAGGGGCAAGAAACAGCTTCACTTTCGTTACCAACAAAATCTTAAGGAGGACAGATGCTCATGCTGATTTTGATAGTATCTCAAAGAAAGAAGCATACAGTCGTGTCTCCGCTAAAGATAGTGTTATAAGAAAATGGGGAAGTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

22.87

Weight (kDa)

9.78

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013287)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G20130 AT5G20130
fragaria_vesca FvH4_3g00960
malus_domestica MD05G1358000.v1.1 MD10G1331900.v1.1
prunus_persica Prupe.4G010200_v2.0.a1
pyrus_communis pycom05g32380
rosa_chinensis RchiOBHm_Chr5g0001481
rosa_laevigata RLG00000030932
rosa_multiflora Rmu_co8090336.1_g000001 Rmu_sc0003749.1_g000010
rosa_roxburghii Rroxscaffold_1G00074910
rosa_rugosa Rorug04G0390500
rosa_samantha Rh5AG011500 Rh5BG014000 Rh5CG012500 Rh5DG011700
rosa_wichuraiana Rw5G001090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
AccB1I GGYRCC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 53
AciI CCGC 2 cut(s) 82, 576
AcsI RAATTY 2 cut(s) 227, 387
AfiI CCNNNNNNNGG 2 cut(s) 105, 468
AflII CTTAAG 1 cut(s) 508
AgsI TTSAA 1 cut(s) 445
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 5 cut(s) 10, 27, 95, 424, 483
AluI AGCT 5 cut(s) 10, 27, 95, 424, 483
Alw26I GTCTC 2 cut(s) 138, 577
ApeKI GCWGC 2 cut(s) 7, 95
ApoI RAATTY 2 cut(s) 227, 387
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 178, 330
AsuHPI GGTGA 2 cut(s) 53, 350
AvaII GGWCC 2 cut(s) 178, 330
BaeGI GKGCMC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 433
BbvI GCAGC 2 cut(s) 19, 82
BceAI ACGGC 2 cut(s) 16, 154
BcgI CGANNNNNNTGC 2 cut(s) 304, 338
BciT130I CCWGG 1 cut(s) 209
BcoDI GTCTC 2 cut(s) 138, 577
BfrI CTTAAG 1 cut(s) 508
BisI GCNGC 2 cut(s) 8, 96
BlsI GCNGC 2 cut(s) 9, 97
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 2 cut(s) 178, 330
BmgT120I GGNCC 2 cut(s) 178, 330
BmiI GGNNCC 1 cut(s) 205
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 2 cut(s) 417, 511
BpiI GAAGAC 1 cut(s) 433
Bpu10I CCTNAGC 1 cut(s) 23
BpuEI CTTGAG 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 207, 208
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 468
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 207, 208
BseLI CCNNNNNNNGG 2 cut(s) 105, 468
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 278
BseSI GKGCMC 1 cut(s) 208
BseXI GCAGC 2 cut(s) 19, 82
BshNI GGYRCC 1 cut(s) 203
BslFI GGGAC 3 cut(s) 19, 97, 254
BslI CCNNNNNNNGG 2 cut(s) 105, 468
BsmAI GTCTC 2 cut(s) 138, 577
BsmFI GGGAC 3 cut(s) 19, 97, 254
Bsp1286I GDGCHC 1 cut(s) 208
BspACI CCGC 2 cut(s) 82, 576
BspCNI CTCAG 1 cut(s) 173
BspLI GGNNCC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 203
BspTI CTTAAG 1 cut(s) 508
BssECI CCNNGG 2 cut(s) 207, 208
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 3 cut(s) 338, 453, 566
BstAFI CTTAAG 1 cut(s) 508
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 2 cut(s) 29, 432
BstDEI CTNAG 3 cut(s) 23, 160, 382
BstHHI GCGC 1 cut(s) 7
BstMAI GTCTC 2 cut(s) 138, 577
BstMWI GCNNNNNNNGC 3 cut(s) 191, 365, 374
BstNI CCWGG 1 cut(s) 209
BstSCI CCNGG 1 cut(s) 207
BstSLI GKGCMC 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 19, 82
BstV2I GAAGAC 1 cut(s) 433
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 2 cut(s) 29, 432
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 178, 330
CseI GACGC 1 cut(s) 327
CviAII CATG 2 cut(s) 397, 527
CviJI RGCY 6 cut(s) 10, 27, 95, 300, 424, 483
CviKI_1 RGCY 6 cut(s) 10, 27, 95, 300, 424, 483
DdeI CTNAG 3 cut(s) 23, 160, 382
Eco47I GGWCC 2 cut(s) 178, 330
EcoRII CCWGG 1 cut(s) 207
FaeI CATG 2 cut(s) 400, 530
FaiI YATR 5 cut(s) 398, 459, 528, 562, 593
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 3 cut(s) 19, 97, 254
FatI CATG 2 cut(s) 396, 526
FauI CCCGC 1 cut(s) 89
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 8, 96
Fsp4HI GCNGC 2 cut(s) 8, 96
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 8, 96
HgaI GACGC 1 cut(s) 327
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 400, 530
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 54
HindII GTYRAC 1 cut(s) 54
HindIII AAGCTT 1 cut(s) 25
HinfI GANTC 2 cut(s) 55, 144
HphI GGTGA 2 cut(s) 53, 350
Hpy166II GTNNAC 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 3 cut(s) 338, 453, 566
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 365, 374
HpyF3I CTNAG 3 cut(s) 23, 160, 382
Hsp92II CATG 2 cut(s) 400, 530
HspAI GCGC 1 cut(s) 5
LmnI GCTCC 1 cut(s) 83
LpnPI CCDG 6 cut(s) 128, 147, 194, 221, 286, 334
Lsp1109I GCAGC 2 cut(s) 19, 82
LweI GCATC 2 cut(s) 417, 511
MaeIII GTNAC 2 cut(s) 59, 493
MboII GAAGA 1 cut(s) 433
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 3 cut(s) 227, 387, 405
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 357
MseI TTAA 2 cut(s) 252, 509
MspCI CTTAAG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 209
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 3 cut(s) 191, 365, 374
NlaIII CATG 2 cut(s) 400, 530
NlaIV GGNNCC 1 cut(s) 205
NmuCI GTSAC 1 cut(s) 59
PasI CCCWGGG 1 cut(s) 208
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 2 cut(s) 9, 97
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PsiI TTATAA 1 cut(s) 593
Psp6I CCWGG 1 cut(s) 207
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 205
PspPI GGNCC 2 cut(s) 178, 330
SalI GTCGAC 1 cut(s) 52
SaqAI TTAA 2 cut(s) 252, 509
SatI GCNGC 2 cut(s) 8, 96
Sau96I GGNCC 2 cut(s) 178, 330
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 209
SduI GDGCHC 1 cut(s) 208
SfaNI GCATC 2 cut(s) 417, 511
SinI GGWCC 2 cut(s) 178, 330
SmlI CTYRAG 2 cut(s) 128, 508
SmoI CTYRAG 2 cut(s) 128, 508
Sse9I AATT 3 cut(s) 227, 387, 405
SsiI CCGC 2 cut(s) 82, 576
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 3 cut(s) 338, 453, 566
TaqI TCGA 1 cut(s) 53
TasI AATT 3 cut(s) 227, 387, 405
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 2 cut(s) 252, 509
Tru9I TTAA 2 cut(s) 252, 509
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 2 cut(s) 7, 95
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 105, 240
TspRI CASTG 1 cut(s) 456
Vha464I CTTAAG 1 cut(s) 508
VpaK11BI GGWCC 2 cut(s) 178, 330
XapI RAATTY 2 cut(s) 227, 387
XmiI GTMKAC 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.