Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0013287

Physical Location & Seq

Genomic Coordinates Forward (+)

510257 .. 512050

Gene Structure 1794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G010200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGACGCTGGTTCTTAACCTAATCCCGCCATCCCAAATCCTACTTCACTCGTCGTCGTCTCATCCACTGCCAACTACTAGTTCCCGTCAAAATGAAACAACCCAAGATTGGACTGCTCTGCTGTTCAAGCTCAAATGCCGCGGCAGGTTCTCTTGCCTTTTCTCAGATAATCGCAAAGAGGAGCAAGCCAGGAAAGCATTAGAAGGTGCACTTGGTGGGAAAAAAAGTGAATTTGAGAAATGGGACAAAGAAATTAAGAGAAGAGAGGAGGTGGGTGGAGGCGGTAGTGCTGGTGGAGGGGGATGGTTTGGGTGGCGTGGATGGTTTGGATGGTCGAATGGTGACCATTTCTGGCGAGAAGCACAACAAGCAAGTCTTGCTGTGTTGGGTATTATCCTGATGTATCTCATAATTGCAAAGGGAGAACTGATGCTTGCTGTCATCTTCAATCCGTTATTGTATGCCTTGCGAGGGACAAGAAATGTGTTCGCTTTCATAACTTCTAAAATCTTAAGGAAGAGAGGACCAGATGGTCAGGTTGTTTTTGATAATATCTCGAAGAATGAAGCCTACAGTAGTGTCTCTGCTAAAGACAGTGTTCTGAGAAAATGGGGAAGTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.1

Weight (kDa)

9.82

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20130 AT5G20130
fragaria_vesca	FvH4_3g00960
malus_domestica	MD05G1358000.v1.1 MD10G1331900.v1.1
prunus_persica	Prupe.4G010200_v2.0.a1
pyrus_communis	pycom05g32380
rosa_chinensis	RchiOBHm_Chr5g0001481
rosa_laevigata	RLG00000030932
rosa_multiflora	Rmu_co8090336.1_g000001 Rmu_sc0003749.1_g000010
rosa_roxburghii	Rroxscaffold_1G00074910
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011500 Rh5BG014000 Rh5CG012500 Rh5DG011700
rosa_wichuraiana	Rw5G001090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	531
Acc36I	ACCTGC	1 cut(s)	135
AccII	CGCG	1 cut(s)	141
AciI	CCGC	4 cut(s)	26, 139, 141, 282
AcsI	RAATTY	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	215
AfiI	CCNNNNNNNGG	2 cut(s)	108, 471
AflII	CTTAAG	1 cut(s)	511
AgsI	TTSAA	2 cut(s)	127, 448
AhlI	ACTAGT	1 cut(s)	77
AjnI	CCWGG	1 cut(s)	188
AjuI	GAANNNNNNNTTGG	6 cut(s)	27, 59, 64, 96, 195, 227
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	2 cut(s)	63, 586
Alw44I	GTGCAC	1 cut(s)	207
ApaLI	GTGCAC	1 cut(s)	207
ApoI	RAATTY	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	211
BccI	CCATC	5 cut(s)	37, 297, 315, 324, 524
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	63, 586
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	571
BfrI	CTTAAG	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	135
BisI	GCNGC	2 cut(s)	139, 142
BlsI	GCNGC	2 cut(s)	140, 143
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	108, 471
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	5 cut(s)	29, 61, 308, 326, 335
BseLI	CCNNNNNNNGG	2 cut(s)	108, 471
BseMII	CTCAG	2 cut(s)	177, 593
BseRI	GAGGAG	2 cut(s)	194, 281
BseSI	GKGCMC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	141
BsiHKAI	GWGCWC	1 cut(s)	211
BslFI	GGGAC	2 cut(s)	257, 487
BslI	CCNNNNNNNGG	2 cut(s)	108, 471
BsmAI	GTCTC	2 cut(s)	63, 586
BsmBI	CGTCTC	1 cut(s)	63
BsmFI	GGGAC	2 cut(s)	257, 487
Bsp1286I	GDGCHC	1 cut(s)	211
BspACI	CCGC	4 cut(s)	26, 139, 141, 282
BspCNI	CTCAG	2 cut(s)	176, 594
BspFNI	CGCG	1 cut(s)	141
BspMI	ACCTGC	1 cut(s)	135
BspTI	CTTAAG	1 cut(s)	511
BssECI	CCNNGG	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	575, 596
Bst6I	CTCTTC	2 cut(s)	256, 512
BstAFI	CTTAAG	1 cut(s)	511
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	186, 435
BstDEI	CTNAG	2 cut(s)	163, 602
BstDSI	CCRYGG	1 cut(s)	139
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	5 cut(s)	29, 61, 308, 326, 335
BstFNI	CGCG	1 cut(s)	141
BstMAI	GTCTC	2 cut(s)	63, 586
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 194, 368, 377
BstNI	CCWGG	1 cut(s)	190
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	571
BstSLI	GKGCMC	1 cut(s)	211
BstUI	CGCG	1 cut(s)	141
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	5 cut(s)	29, 61, 308, 326, 335
BtsI	GCAGTG	1 cut(s)	65
BtsIMutI	CAGTG	2 cut(s)	65, 601
BveI	ACCTGC	1 cut(s)	135
Cac8I	GCNNGC	2 cut(s)	186, 435
Cfr13I	GGNCC	1 cut(s)	524
Cfr42I	CCGCGG	1 cut(s)	142
CseI	GACGC	1 cut(s)	13
CviJI	RGCY	3 cut(s)	130, 188, 569
CviKI_1	RGCY	3 cut(s)	130, 188, 569
DdeI	CTNAG	2 cut(s)	163, 602
DraIII	CACNNNGTG	1 cut(s)	215
DrdI	GACNNNNNNGTC	1 cut(s)	531
DseDI	GACNNNNNNGTC	1 cut(s)	531
Eam1104I	CTCTTC	2 cut(s)	256, 512
EarI	CTCTTC	2 cut(s)	256, 512
Eco47I	GGWCC	1 cut(s)	524
Eco91I	GGTNACC	1 cut(s)	341
EcoO65I	GGTNACC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	188
Esp3I	CGTCTC	1 cut(s)	63
FaiI	YATR	3 cut(s)	410, 462, 497
FalI	AAGNNNNNCTT	4 cut(s)	195, 227, 360, 392
FaqI	GGGAC	2 cut(s)	257, 487
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	139, 142
FokI	GGATG	5 cut(s)	16, 48, 315, 333, 342
Fsp4HI	GCNGC	2 cut(s)	139, 142
FspBI	CTAG	1 cut(s)	78
GluI	GCNGC	2 cut(s)	139, 142
HgaI	GACGC	1 cut(s)	13
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	2 cut(s)	166, 603
Hpy188III	TCNNGA	2 cut(s)	397, 556
Hpy8I	GTNNAC	1 cut(s)	209
Hpy99I	CGWCG	2 cut(s)	55, 58
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	575, 596
HpyCH4V	TGCA	2 cut(s)	209, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 194, 368, 377
HpyF3I	CTNAG	2 cut(s)	163, 602
KspI	CCGCGG	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	181
LpnPI	CCDG	8 cut(s)	130, 175, 202, 276, 337, 410, 521, 540
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	341
MboII	GAAGA	4 cut(s)	273, 436, 529, 571
MhlI	GDGCHC	1 cut(s)	211
MluCI	AATT	3 cut(s)	230, 252, 411
MnlI	CCTC	7 cut(s)	172, 259, 262, 272, 290, 464, 515
MseI	TTAA	3 cut(s)	15, 255, 512
MspA1I	CMGCKG	1 cut(s)	141
MspCI	CTTAAG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	4 cut(s)	127, 194, 368, 377
NmuCI	GTSAC	1 cut(s)	341
PkrI	GCNGC	2 cut(s)	140, 143
Psp6I	CCWGG	1 cut(s)	188
PspEI	GGTNACC	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	188
PspPI	GGNCC	1 cut(s)	524
SacII	CCGCGG	1 cut(s)	142
SaqAI	TTAA	3 cut(s)	15, 255, 512
SatI	GCNGC	2 cut(s)	139, 142
Sau96I	GGNCC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	6 cut(s)	21, 132, 149, 208, 273, 540
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	571
Sfr303I	CCGCGG	1 cut(s)	142
SgrBI	CCGCGG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
SpeI	ACTAGT	1 cut(s)	77
Sse9I	AATT	3 cut(s)	230, 252, 411
SsiI	CCGC	4 cut(s)	26, 139, 141, 282
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	575, 596
TaqI	TCGA	2 cut(s)	335, 557
TasI	AATT	3 cut(s)	230, 252, 411
TauI	GCSGC	2 cut(s)	141, 144
Tru1I	TTAA	3 cut(s)	15, 255, 512
Tru9I	TTAA	3 cut(s)	15, 255, 512
TscAI	CASTG	2 cut(s)	72, 601
TseFI	GTSAC	1 cut(s)	341
Tsp45I	GTSAC	1 cut(s)	341
TspDTI	ATGAA	3 cut(s)	108, 484, 579
TspGWI	ACGGA	1 cut(s)	441
TspRI	CASTG	2 cut(s)	72, 601
Vha464I	CTTAAG	1 cut(s)	511
VneI	GTGCAC	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	1 cut(s)	230
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.