Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Forward (+)

7406030 .. 7408754

Gene Structure 2725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22370.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGTGTTTGGACAAGTAGTAATAGGTCCTCCAGGATCGGGAAAGACCACTTATTGCAATGGAATGTCTCAGTTCCTCTCTCTAATGGGCAGGAAGGTTGCTATTGTTAATCTGGATCCTGCAAATGATGCATTACCTTATGAGTGTGGTGTGAATATAGAAGAATTGATCAAGTTAGAAGATGTTATGTCGGAACACTCGCTTGGTCCTAATGGAGGTCTTGTATATTGTATGGAGTACTTGGAGAAAAACATTGACTGGCTGGAATCTAAACTAAAGCCTCTTCTGAAGGATCATTACATTCTCTTTGATTTTCCTGGCCAAGTGGAATTGTTCTTCATTCATGACAGTACCAAGAATGTTCTCACGAAGCTGATTAAATCATTGAACCTTAGATTAACTGCTGTGCAACTAATTGATTCCCATCTATGTTGTGATCCCGGGAACTACGTAAGTTCGCTACTTCTCTCCTTATCCACAATGCTTCACATGGAACTCCCACATGTCAATGTATTGTCTAAAATCGATCTGATTGGAAGCTACGGGAAGCTAGCTTTCAATTTAGATTTCTATACCGATGTTCAAGACTTGTCATACTTGGAGCACCATCTTAGTCAAGATCCTCGCTCTGCTAAGTACAGAAAACTAACAAAAGAGCTATGTAGTGTCATTGAAGATTACAGTCTTGTTAATTTTACAACCTTGGATATTCAGGATAAAGAAAGTGTTGGGGATCTAGTAAAGCTCATCGACAAGAGCAATGGATACATATTTGCCGGCATTGATGCAAGTGTGGTTGAATACAGCAAGATTGCAATTGGTCAAACTGATTGGGATTATAACAGAGTCGCAGCTGTACAGGAGAAGTACATGGAAGATGAGGAAATACAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

298

Amino Acids

33.57

Weight (kDa)

4.76

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	7 - 255	1.2e-78	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	840
AclWI	GGATC	7 cut(s)	43, 110, 123, 300, 431, 614, 741
AcoI	YGGCCR	1 cut(s)	319
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	5 cut(s)	239, 352, 638, 858, 869
AfiI	CCNNNNNNNGG	2 cut(s)	38, 215
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	5 cut(s)	388, 559, 584, 674, 800
AjnI	CCWGG	2 cut(s)	31, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	7 cut(s)	373, 540, 550, 554, 658, 745, 854
AluI	AGCT	7 cut(s)	373, 540, 550, 554, 658, 745, 854
Alw21I	GWGCWC	1 cut(s)	606
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	7 cut(s)	43, 110, 123, 300, 431, 614, 741
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	851
AspS9I	GGNCC	2 cut(s)	26, 206
AsuC2I	CCSGG	2 cut(s)	441, 442
AsuNHI	GCTAGC	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	440
AvaII	GGWCC	2 cut(s)	26, 206
BalI	TGGCCA	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	115
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	1 cut(s)	863
BccI	CCATC	2 cut(s)	432, 615
BciT130I	CCWGG	2 cut(s)	33, 318
BciVI	GTATCC	1 cut(s)	758
BclI	TGATCA	1 cut(s)	168
BcnI	CCSGG	2 cut(s)	441, 442
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	2 cut(s)	551, 737
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	1 cut(s)	852
BlsI	GCNGC	1 cut(s)	853
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	4 cut(s)	33, 318, 441, 442
Bme18I	GGWCC	2 cut(s)	26, 206
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	2 cut(s)	26, 206
BmiI	GGNNCC	1 cut(s)	117
BmrFI	CCNGG	4 cut(s)	33, 318, 441, 442
BmsI	GCATC	2 cut(s)	118, 775
BmtI	GCTAGC	1 cut(s)	554
BpmI	CTGGAG	1 cut(s)	15
BpuMI	CCSGG	2 cut(s)	441, 442
Bsa29I	ATCGAT	1 cut(s)	525
BsaAI	YACGTR	1 cut(s)	451
BsaBI	GATNNNNATC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	440, 702
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 215
Bse118I	RCCGGY	1 cut(s)	776
Bse1I	ACTGG	1 cut(s)	263
Bse3DI	GCAATG	2 cut(s)	64, 766
Bse8I	GATNNNNATC	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	33, 318
BseCI	ATCGAT	1 cut(s)	525
BseDI	CCNNGG	2 cut(s)	440, 702
BseJI	GATNNNNATC	1 cut(s)	423
BseLI	CCNNNNNNNGG	2 cut(s)	38, 215
BseMI	GCAATG	2 cut(s)	64, 766
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	863
BshFI	GGCC	1 cut(s)	321
BshVI	ATCGAT	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	606
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	2 cut(s)	441, 777
BslI	CCNNNNNNNGG	2 cut(s)	38, 215
BsmAI	GTCTC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	321
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp1407I	TGTACA	1 cut(s)	856
Bsp143I	GATC	8 cut(s)	35, 115, 168, 292, 436, 526, 619, 733
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	525
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	1 cut(s)	117
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	7 cut(s)	43, 110, 123, 300, 431, 614, 741
BsrDI	GCAATG	2 cut(s)	64, 766
BsrFI	RCCGGY	1 cut(s)	776
BsrGI	TGTACA	1 cut(s)	856
BsrI	ACTGG	1 cut(s)	263
BssAI	RCCGGY	1 cut(s)	776
BssECI	CCNNGG	2 cut(s)	440, 702
BssMI	GATC	8 cut(s)	35, 115, 168, 292, 436, 526, 619, 733
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	2 cut(s)	33, 318
Bst4CI	ACNGT	2 cut(s)	350, 683
Bst6I	CTCTTC	1 cut(s)	288
BstAPI	GCANNNNNTGC	1 cut(s)	128
BstAUI	TGTACA	1 cut(s)	856
BstBAI	YACGTR	1 cut(s)	451
BstC8I	GCNNGC	2 cut(s)	552, 778
BstDEI	CTNAG	4 cut(s)	69, 392, 611, 633
BstENI	CCTNNNNNAGG	1 cut(s)	213
BstKTI	GATC	8 cut(s)	38, 118, 171, 295, 439, 529, 622, 736
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	8 cut(s)	35, 115, 168, 292, 436, 526, 619, 733
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	2 cut(s)	33, 318
BstNSI	RCATGY	1 cut(s)	506
BstSCI	CCNGG	4 cut(s)	31, 316, 439, 440
BstSNI	TACGTA	1 cut(s)	451
BstV1I	GCAGC	1 cut(s)	863
BstX2I	RGATCY	3 cut(s)	115, 619, 733
BstYI	RGATCY	3 cut(s)	115, 619, 733
Bsu15I	ATCGAT	1 cut(s)	525
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	321
BsuTUI	ATCGAT	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	552, 778
CciI	TCATGA	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	776
Cfr13I	GGNCC	2 cut(s)	26, 206
Cfr9I	CCCGGG	1 cut(s)	440
ClaI	ATCGAT	1 cut(s)	525
Csp6I	GTAC	5 cut(s)	238, 351, 637, 857, 868
CviAII	CATG	4 cut(s)	344, 490, 503, 871
CviQI	GTAC	5 cut(s)	238, 351, 637, 857, 868
DdeI	CTNAG	4 cut(s)	69, 392, 611, 633
DpnI	GATC	8 cut(s)	37, 117, 170, 294, 438, 528, 621, 735
DpnII	GATC	8 cut(s)	35, 115, 168, 292, 436, 526, 619, 733
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
Eco105I	TACGTA	1 cut(s)	451
Eco130I	CCWWGG	1 cut(s)	702
Eco47I	GGWCC	2 cut(s)	26, 206
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	31, 316
EcoT14I	CCWWGG	1 cut(s)	702
EcoT22I	ATGCAT	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	4 cut(s)	347, 493, 506, 874
FatI	CATG	4 cut(s)	343, 489, 502, 870
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	852
Fsp4HI	GCNGC	1 cut(s)	852
FspBI	CTAG	2 cut(s)	551, 737
GluI	GCNGC	1 cut(s)	852
GsuI	CTGGAG	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	2 cut(s)	441, 777
Hin1II	CATG	4 cut(s)	347, 493, 506, 874
HinfI	GANTC	3 cut(s)	266, 419, 846
HpaII	CCGG	2 cut(s)	441, 777
Hpy188I	TCNGA	3 cut(s)	193, 288, 531
Hpy188III	TCNNGA	7 cut(s)	39, 113, 344, 367, 584, 617, 713
HpyAV	CCTTC	2 cut(s)	88, 283
HpyCH4III	ACNGT	2 cut(s)	350, 683
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	6 cut(s)	57, 122, 131, 409, 788, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	4 cut(s)	69, 392, 611, 633
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	4 cut(s)	347, 493, 506, 874
KroI	GCCGGC	1 cut(s)	776
KroNI	GCCGGC	1 cut(s)	778
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	8 cut(s)	35, 115, 168, 292, 436, 526, 619, 733
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	1 cut(s)	863
LweI	GCATC	2 cut(s)	118, 775
MaeI	CTAG	2 cut(s)	551, 737
MaeII	ACGT	1 cut(s)	450
MalI	GATC	8 cut(s)	37, 117, 170, 294, 438, 528, 621, 735
MboI	GATC	8 cut(s)	35, 115, 168, 292, 436, 526, 619, 733
MboII	GAAGA	6 cut(s)	173, 191, 275, 328, 686, 887
MfeI	CAATTG	1 cut(s)	816
MflI	RGATCY	3 cut(s)	115, 619, 733
MhlI	GDGCHC	1 cut(s)	606
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	6 cut(s)	164, 329, 414, 559, 691, 816
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	855
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	6 cut(s)	39, 86, 209, 291, 633, 874
Mox20I	TGGCCA	1 cut(s)	321
Mph1103I	ATGCAT	1 cut(s)	133
MroNI	GCCGGC	1 cut(s)	776
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	4 cut(s)	108, 378, 398, 690
MslI	CAYNNNNRTG	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	854
MspI	CCGG	2 cut(s)	441, 777
MspR9I	CCNGG	4 cut(s)	33, 318, 441, 442
MunI	CAATTG	1 cut(s)	816
MvaI	CCWGG	2 cut(s)	33, 318
MwoI	GCNNNNNNNGC	1 cut(s)	128
NaeI	GCCGGC	1 cut(s)	778
NciI	CCSGG	2 cut(s)	441, 442
NdeII	GATC	8 cut(s)	35, 115, 168, 292, 436, 526, 619, 733
NgoMIV	GCCGGC	1 cut(s)	776
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	4 cut(s)	347, 493, 506, 874
NlaIV	GGNNCC	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	1 cut(s)	506
PagI	TCATGA	1 cut(s)	343
PciI	ACATGT	1 cut(s)	502
PdiI	GCCGGC	1 cut(s)	778
PfeI	GAWTC	2 cut(s)	266, 419
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	853
PleI	GAGTC	1 cut(s)	854
PpsI	GAGTC	1 cut(s)	854
Ppu21I	YACGTR	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	26
PscI	ACATGT	1 cut(s)	502
PsiI	TTATAA	1 cut(s)	840
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	31, 316
PspGI	CCWGG	2 cut(s)	31, 316
PspN4I	GGNNCC	1 cut(s)	117
PspPI	GGNCC	2 cut(s)	26, 206
PspPPI	RGGWCCY	1 cut(s)	26
PsuI	RGATCY	3 cut(s)	115, 619, 733
PvuII	CAGCTG	1 cut(s)	854
RsaI	GTAC	5 cut(s)	239, 352, 638, 858, 869
RsaNI	GTAC	5 cut(s)	238, 351, 637, 857, 868
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	4 cut(s)	108, 378, 398, 690
SatI	GCNGC	1 cut(s)	852
Sau3AI	GATC	8 cut(s)	35, 115, 168, 292, 436, 526, 619, 733
Sau96I	GGNCC	2 cut(s)	26, 206
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	1 cut(s)	855
ScrFI	CCNGG	4 cut(s)	33, 318, 441, 442
SduI	GDGCHC	1 cut(s)	606
SfaNI	GCATC	2 cut(s)	118, 775
SinI	GGWCC	2 cut(s)	26, 206
SmaI	CCCGGG	1 cut(s)	442
SmiMI	CAYNNNNRTG	1 cut(s)	507
SnaBI	TACGTA	1 cut(s)	451
Sse9I	AATT	6 cut(s)	164, 329, 414, 559, 691, 816
SspMI	CTAG	2 cut(s)	551, 737
StyD4I	CCNGG	4 cut(s)	31, 316, 439, 440
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	2 cut(s)	350, 683
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	525, 750
TasI	AATT	6 cut(s)	164, 329, 414, 559, 691, 816
TatI	WGTACW	4 cut(s)	237, 636, 856, 867
TfiI	GAWTC	2 cut(s)	266, 419
Tru1I	TTAA	4 cut(s)	108, 378, 398, 690
Tru9I	TTAA	4 cut(s)	108, 378, 398, 690
TseI	GCWGC	1 cut(s)	851
TspDTI	ATGAA	2 cut(s)	328, 332
TspMI	CCCGGG	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	26, 206
XagI	CCTNNNNNAGG	1 cut(s)	213
XceI	RCATGY	1 cut(s)	506
XmaI	CCCGGG	1 cut(s)	440
XspI	CTAG	2 cut(s)	551, 737
ZrmI	AGTACT	1 cut(s)	239
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.