Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Forward (+)

52002646 .. 52007792

Gene Structure 5147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0373800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGAAGATGGTGTGGTATATTCTGTGTGGTTTTGCATTGTTGTTTATGAACCTGGAGACCTCTCTCGCCGGCGGCAGCAACAACGTCACGTACGATGGCCGGTCTCTGATAATCGACGGTCAGCATAAGATTCTCTTCTCCGGTTCCATTCACTACCCCAGAAGCACTCCTCAGATGTGGCCATCTCTGATAGCCAAAGCCAAAGAAGGGGGAATAGATGTGATACAAACATACGTGTTTTGGAACCTTCATGAACCCCAAAAAGGACAGTTTGTTTTCCATGGAAGACGTGACATAGTAGCCTTTATAAAGGAAGTCCACAGACAAGGCCTGTATGTGTGCCTTAGAATTGGACCCTTCATTCAGAGTGAATGGTCTTATGGTGGTTTTCCAGTTTGGTTAAGGAACATTCCGGGCATTGTTTTCCGGTCTGATAATGAACCGTATAAGGCTGAAATGCAGAGGTTTACAGCAAAAATAGTAGACCTAATGAAATCAAATGGACTGTACGCTTCACAAGGCGGACCGATTATATTGTCACAGATTGAGAACGAGTACCAAAATGTGGAAGCGGCGTTTCATGAAAAGGGGCCTCCTTATGTTCTTTGGGCTGCATCCATGGCGGAGGGCCTTCAAACTGGTGTGCCCTGGGTTATGTGCAAGCAAAATGATGCTCCCGGCGCTGTGATCAATGCATGTAATGGGCTGAAGTGTGGAGAAACCTTTGCTGGCCCAAATGCCCCTAATAAGCCAGCAATTTGGACAGAGGACTGGACAAGCCAATACCTTGTATATGGTGAAGAACCATACCTCAGAAGAGCTGAAGATATTGCATTTCATGTTGCACTCTTTATTGCAAAGAATAAAGGAAGCTATGTAAACTACTACATGTATCATGGAGGAACCAATTTTGGAAGAACAGCTTCCGAGTTTGTGACTACTAGTTATTACGATGAAGCTCCTCTTGATGAGTATGGTATACCAAAGGAACCAAAATGGAGTCATCTCAAGGAGTTGCATGCTGCAGTGAAGTTGTCCATCAGTCCTCTACTTGCTGGAGAACAAACCGTTGTCAATTTGGGTCAATTTCAAACAGCCTATGTCTACAAAGCTCAATCTGGTGAATGTGCTGCTTTCTTGGTGAACAATGGCTCTAAAGATGCCACTGTCCAATTTCAGAACTCTCCTTATCAATTGTCTCCAAAGTCAATTAGTATCTTACCAGACTGTAAAAATGTGACTTTCAACACTGGAAAGGTAAGCGCACAACATGCAACAAGATCATGGACACCAGCTCAAAAGTTTGATTCACCTCAGAATTGGCAAGAGTACAAAGAAGCCATTCCCACTTATGATGACACCTCTCTAAGAGAGAACATAATAGTAGACCAAATGAGAACTACAAATGATCGTTCTGATTATCTGTGGTACACTTTCAGCTTTCAGCATGACTCTCGTAATCCAGAATCCACATTAAACGTGCAAACACGCGGACATATCTTGCATTCATTCGTAAACGGAGTACTCGTAGGATCTGGACATGGAGTGCACAGGAATACAGGTTTTCCCTTGGAGAATAAGATTACTCTGAATAAGGGGATAAACCATGTCTCCCTACTAAGTGCAATGGTTGGACTGCCGGACTCTGGAGCATATCTAGAGCGTAGAGATTATGGATTACAGAGTGTGAAGATTGACGATAAAGATTTCGGCACATATGCATGGGGATACCAGGTCGGGTTGTATGGAGAGAACTTACAAATCCATACAGACACAAGTAAAGTTCAATGGAACAGATTAAGCTATTCAAAACAACCACTGACATGGTATAAGATTTTATTTGATGCACCAGCAGGAAATGACCCTGTTGCATTATATCTTGGTTCCATGGGAAAGGGTGAAGTTTGGATCAATGGTCAAAGCATTGGTCGATATTGGGTCTCCTTCCACACCCCTAAAGGGACTCCTTCACAGACATGGTACCATGTACCTCGATCTTTCCTTAAGCCTACTGGAAACTTGTTAGTTCTCATTGAAGAAGAAACTGGAGACCCGGTCAAGATATCTCTGGACAAAGTAAATTATAGTTTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

698

Amino Acids

78.57

Weight (kDa)

6.71

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	35 - 342	1.8e-112	Glycosyl hydrolases family 35
GHD	PF17834	365 - 420	1.6e-22	Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd	PF21467	607 - 673	6.1e-24	Beta-galactosidase, galactose-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	1980
AccB1I	GGYRCC	1 cut(s)	1980
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccI	GTMKAC	4 cut(s)	483, 979, 1104, 1386
AccII	CGCG	1 cut(s)	1491
AciI	CCGC	5 cut(s)	72, 522, 572, 623, 1491
AclWI	GGATC	2 cut(s)	1540, 1916
AcoI	YGGCCR	2 cut(s)	97, 179
AcuI	CTGAAG	2 cut(s)	728, 843
AfaI	GTAC	8 cut(s)	92, 509, 557, 1331, 1430, 1524, 1982, 1989
AfiI	CCNNNNNNNGG	5 cut(s)	207, 263, 565, 1646, 1959
AflII	CTTAAG	1 cut(s)	2003
AflIII	ACRYGT	2 cut(s)	234, 888
AgsI	TTSAA	6 cut(s)	635, 1091, 1246, 1787, 1809, 2036
AhlI	ACTAGT	1 cut(s)	941
AjiI	CACGTC	1 cut(s)	290
AjnI	CCWGG	3 cut(s)	51, 647, 1731
AluBI	AGCT	8 cut(s)	821, 873, 923, 959, 1112, 1295, 1440, 1803
AluI	AGCT	8 cut(s)	821, 873, 923, 959, 1112, 1295, 1440, 1803
Alw21I	GWGCWC	1 cut(s)	1551
Alw26I	GTCTC	6 cut(s)	50, 108, 1203, 1615, 1945, 2043
Alw44I	GTGCAC	1 cut(s)	1547
AlwI	GGATC	2 cut(s)	1540, 1916
AoxI	GGCC	6 cut(s)	97, 179, 328, 590, 628, 730
ApaLI	GTGCAC	1 cut(s)	1547
ApeKI	GCWGC	4 cut(s)	75, 611, 1022, 1130
ArsI	GACNNNNNNTTYG	2 cut(s)	1912, 1944
Asp700I	GAANNNNTTC	2 cut(s)	922, 1341
Asp718I	GGTACC	1 cut(s)	1980
AspLEI	GCGC	2 cut(s)	683, 1265
AspS9I	GGNCC	5 cut(s)	353, 524, 590, 628, 731
AsuC2I	CCSGG	3 cut(s)	414, 678, 2054
AsuHPI	GGTGA	5 cut(s)	809, 1133, 1153, 1302, 1910
AvaII	GGWCC	2 cut(s)	353, 524
BaeGI	GKGCMC	2 cut(s)	648, 1551
BalI	TGGCCA	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	1980
BbsI	GAAGAC	1 cut(s)	292
Bbv12I	GWGCWC	1 cut(s)	1551
BbvI	GCAGC	4 cut(s)	87, 598, 1009, 1117
BccI	CCATC	3 cut(s)	89, 190, 1046
BcgI	CGANNNNNNTGC	2 cut(s)	1436, 1470
BciT130I	CCWGG	3 cut(s)	53, 649, 1733
BciVI	GTATCC	1 cut(s)	1721
BclI	TGATCA	1 cut(s)	687
BcnI	CCSGG	3 cut(s)	414, 678, 2054
BcoDI	GTCTC	6 cut(s)	50, 108, 1203, 1615, 1945, 2043
BcuI	ACTAGT	1 cut(s)	941
BfaI	CTAG	2 cut(s)	942, 1658
BfmI	CTRYAG	1 cut(s)	1023
BfoI	RGCGCY	1 cut(s)	684
BfrI	CTTAAG	1 cut(s)	2003
BfuI	GTATCC	1 cut(s)	1721
BisI	GCNGC	6 cut(s)	73, 76, 573, 612, 1023, 1131
BlsI	GCNGC	6 cut(s)	74, 77, 574, 613, 1024, 1132
BmcAI	AGTACT	1 cut(s)	1524
Bme1390I	CCNGG	6 cut(s)	53, 414, 649, 678, 1733, 2054
Bme18I	GGWCC	2 cut(s)	353, 524
BmgBI	CACGTC	1 cut(s)	290
BmgT120I	GGNCC	5 cut(s)	353, 524, 590, 628, 731
BmiI	GGNNCC	8 cut(s)	145, 245, 355, 591, 904, 990, 1885, 1982
BmrFI	CCNGG	6 cut(s)	53, 414, 649, 678, 1733, 2054
BmsI	GCATC	4 cut(s)	623, 661, 1150, 1834
BpiI	GAAGAC	1 cut(s)	292
BpmI	CTGGAG	4 cut(s)	74, 1077, 1668, 2067
BpuEI	CTTGAG	1 cut(s)	992
BpuMI	CCSGG	3 cut(s)	414, 678, 2054
BsaAI	YACGTR	2 cut(s)	90, 235
BsaI	GGTCTC	4 cut(s)	50, 108, 1945, 2043
BsaJI	CCNNGG	6 cut(s)	280, 618, 647, 648, 1569, 1887
BsaWI	WCCGGW	2 cut(s)	140, 426
BsaXI	ACNNNNNCTCC	6 cut(s)	1512, 1542, 1595, 1625, 2040, 2070
Bsc4I	CCNNNNNNNGG	5 cut(s)	207, 263, 565, 1646, 1959
Bse118I	RCCGGY	2 cut(s)	68, 99
Bse1I	ACTGG	6 cut(s)	392, 643, 776, 1255, 2017, 2050
Bse3DI	GCAATG	1 cut(s)	1632
BseBI	CCWGG	3 cut(s)	53, 649, 1733
BseDI	CCNNGG	6 cut(s)	280, 618, 647, 648, 1569, 1887
BseGI	GGATG	1 cut(s)	614
BseLI	CCNNNNNNNGG	5 cut(s)	207, 263, 565, 1646, 1959
BseMI	GCAATG	1 cut(s)	1632
BseMII	CTCAG	3 cut(s)	185, 826, 1328
BseNI	ACTGG	6 cut(s)	392, 643, 776, 1255, 2017, 2050
BseRI	GAGGAG	2 cut(s)	159, 951
BseSI	GKGCMC	2 cut(s)	648, 1551
BseXI	GCAGC	4 cut(s)	87, 598, 1009, 1117
Bsh1236I	CGCG	1 cut(s)	1491
BshFI	GGCC	6 cut(s)	99, 181, 330, 592, 630, 732
BshNI	GGYRCC	1 cut(s)	1980
BsiHKAI	GWGCWC	1 cut(s)	1551
BsiSI	CCGG	8 cut(s)	69, 100, 141, 413, 427, 678, 1640, 2054
BsiWI	CGTACG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	1975
BslI	CCNNNNNNNGG	5 cut(s)	207, 263, 565, 1646, 1959
BsmAI	GTCTC	6 cut(s)	50, 108, 1203, 1615, 1945, 2043
BsmFI	GGGAC	1 cut(s)	1975
BsmI	GAATGC	1 cut(s)	1504
BsnI	GGCC	6 cut(s)	99, 181, 330, 592, 630, 732
Bso31I	GGTCTC	4 cut(s)	50, 108, 1945, 2043
Bsp1286I	GDGCHC	2 cut(s)	648, 1551
Bsp143I	GATC	6 cut(s)	687, 1280, 1408, 1532, 1908, 1994
Bsp19I	CCATGG	3 cut(s)	280, 618, 1887
BspACI	CCGC	5 cut(s)	72, 522, 572, 623, 1491
BspANI	GGCC	6 cut(s)	99, 181, 330, 592, 630, 732
BspCNI	CTCAG	3 cut(s)	184, 825, 1327
BspFNI	CGCG	1 cut(s)	1491
BspHI	TCATGA	2 cut(s)	250, 580
BspLI	GGNNCC	8 cut(s)	145, 245, 355, 591, 904, 990, 1885, 1982
BspMAI	CTGCAG	1 cut(s)	1027
BspPI	GGATC	2 cut(s)	1540, 1916
BspQI	GCTCTTC	1 cut(s)	811
BspT107I	GGYRCC	1 cut(s)	1980
BspTI	CTTAAG	1 cut(s)	2003
BspTNI	GGTCTC	4 cut(s)	50, 108, 1945, 2043
BsrDI	GCAATG	1 cut(s)	1632
BsrFI	RCCGGY	2 cut(s)	68, 99
BsrI	ACTGG	6 cut(s)	392, 643, 776, 1255, 2017, 2050
BssAI	RCCGGY	2 cut(s)	68, 99
BssECI	CCNNGG	6 cut(s)	280, 618, 647, 648, 1569, 1887
BssMI	GATC	6 cut(s)	687, 1280, 1408, 1532, 1908, 1994
BssNAI	GTATAC	1 cut(s)	980
BssT1I	CCWWGG	4 cut(s)	280, 618, 1569, 1887
Bst1107I	GTATAC	1 cut(s)	980
Bst2UI	CCWGG	3 cut(s)	53, 649, 1733
Bst4CI	ACNGT	7 cut(s)	119, 270, 444, 507, 1069, 1168, 1229
Bst6I	CTCTTC	2 cut(s)	140, 811
BstAFI	CTTAAG	1 cut(s)	2003
BstAPI	GCANNNNNTGC	1 cut(s)	1271
BstBAI	YACGTR	2 cut(s)	90, 235
BstC8I	GCNNGC	5 cut(s)	70, 662, 730, 753, 1020
BstDEI	CTNAG	6 cut(s)	171, 344, 812, 1314, 1367, 1619
BstDSI	CCRYGG	3 cut(s)	280, 618, 1887
BstF5I	GGATG	1 cut(s)	614
BstFNI	CGCG	1 cut(s)	1491
BstH2I	RGCGCY	1 cut(s)	684
BstHHI	GCGC	2 cut(s)	683, 1265
BstKTI	GATC	6 cut(s)	690, 1283, 1411, 1535, 1911, 1997
BstMAI	GTCTC	6 cut(s)	50, 108, 1203, 1615, 1945, 2043
BstMBI	GATC	6 cut(s)	687, 1280, 1408, 1532, 1908, 1994
BstMWI	GCNNNNNNNGC	3 cut(s)	620, 680, 1271
BstNI	CCWGG	3 cut(s)	53, 649, 1733
BstNSI	RCATGY	4 cut(s)	699, 892, 1022, 1274
BstSCI	CCNGG	6 cut(s)	51, 412, 647, 676, 1731, 2052
BstSFI	CTRYAG	1 cut(s)	1023
BstSLI	GKGCMC	2 cut(s)	648, 1551
BstUI	CGCG	1 cut(s)	1491
BstV1I	GCAGC	4 cut(s)	87, 598, 1009, 1117
BstV2I	GAAGAC	1 cut(s)	292
BstX2I	RGATCY	1 cut(s)	1532
BstXI	CCANNNNNNTGG	2 cut(s)	759, 1824
BstYI	RGATCY	1 cut(s)	1532
BstZ17I	GTATAC	1 cut(s)	980
BsuI	GTATCC	1 cut(s)	1721
BsuRI	GGCC	6 cut(s)	99, 181, 330, 592, 630, 732
BtgI	CCRYGG	3 cut(s)	280, 618, 1887
BtrI	CACGTC	1 cut(s)	290
BtsCI	GGATG	1 cut(s)	614
BtsI	GCAGTG	1 cut(s)	1032
BtsIMutI	CAGTG	4 cut(s)	1032, 1164, 1248, 1817
Cac8I	GCNNGC	5 cut(s)	70, 662, 730, 753, 1020
CciI	TCATGA	2 cut(s)	250, 580
CfoI	GCGC	2 cut(s)	683, 1265
Cfr10I	RCCGGY	2 cut(s)	68, 99
Cfr13I	GGNCC	5 cut(s)	353, 524, 590, 628, 731
CpoI	CGGWCCG	1 cut(s)	524
CsiI	ACCWGGT	1 cut(s)	1731
Csp6I	GTAC	8 cut(s)	91, 508, 556, 1330, 1429, 1523, 1981, 1988
CspI	CGGWCCG	1 cut(s)	524
CviQI	GTAC	8 cut(s)	91, 508, 556, 1330, 1429, 1523, 1981, 1988
DdeI	CTNAG	6 cut(s)	171, 344, 812, 1314, 1367, 1619
DpnI	GATC	6 cut(s)	689, 1282, 1410, 1534, 1910, 1996
DpnII	GATC	6 cut(s)	687, 1280, 1408, 1532, 1908, 1994
EaeI	YGGCCR	2 cut(s)	97, 179
Eam1104I	CTCTTC	2 cut(s)	140, 811
EarI	CTCTTC	2 cut(s)	140, 811
EciI	GGCGGA	2 cut(s)	537, 638
Eco130I	CCWWGG	4 cut(s)	280, 618, 1569, 1887
Eco147I	AGGCCT	1 cut(s)	330
Eco31I	GGTCTC	4 cut(s)	50, 108, 1945, 2043
Eco32I	GATATC	1 cut(s)	2064
Eco47I	GGWCC	2 cut(s)	353, 524
Eco57I	CTGAAG	2 cut(s)	728, 843
EcoO109I	RGGNCCY	2 cut(s)	590, 628
EcoRII	CCWGG	3 cut(s)	51, 647, 1731
EcoRV	GATATC	1 cut(s)	2064
EcoT14I	CCWWGG	4 cut(s)	280, 618, 1569, 1887
EcoT22I	ATGCAT	2 cut(s)	697, 1723
ErhI	CCWWGG	4 cut(s)	280, 618, 1569, 1887
FalI	AAGNNNNNCTT	6 cut(s)	119, 151, 907, 939, 948, 980
FaqI	GGGAC	1 cut(s)	1975
FauNDI	CATATG	1 cut(s)	1717
FbaI	TGATCA	1 cut(s)	687
FblI	GTMKAC	4 cut(s)	483, 979, 1104, 1386
Fnu4HI	GCNGC	6 cut(s)	73, 76, 573, 612, 1023, 1131
FokI	GGATG	1 cut(s)	601
Fsp4HI	GCNGC	6 cut(s)	73, 76, 573, 612, 1023, 1131
FspBI	CTAG	2 cut(s)	942, 1658
GlaI	GCGC	2 cut(s)	682, 1264
GluI	GCNGC	6 cut(s)	73, 76, 573, 612, 1023, 1131
GsuI	CTGGAG	4 cut(s)	74, 1077, 1668, 2067
HaeII	RGCGCY	1 cut(s)	684
HaeIII	GGCC	6 cut(s)	99, 181, 330, 592, 630, 732
HapII	CCGG	8 cut(s)	69, 100, 141, 413, 427, 678, 1640, 2054
HhaI	GCGC	2 cut(s)	683, 1265
Hin6I	GCGC	2 cut(s)	681, 1263
HinP1I	GCGC	2 cut(s)	681, 1263
HinfI	GANTC	7 cut(s)	130, 1000, 1307, 1451, 1466, 1643, 1963
HpaII	CCGG	8 cut(s)	69, 100, 141, 413, 427, 678, 1640, 2054
HphI	GGTGA	5 cut(s)	809, 1133, 1153, 1302, 1910
Hpy188III	TCNNGA	9 cut(s)	251, 581, 965, 1463, 1536, 1647, 1658, 2059, 2069
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	6 cut(s)	200, 257, 367, 641, 1954, 1977
HpyCH4III	ACNGT	7 cut(s)	119, 270, 444, 507, 1069, 1168, 1229
HpyCH4IV	ACGT	5 cut(s)	84, 89, 234, 289, 1479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	620, 680, 1271
HpyF3I	CTNAG	6 cut(s)	171, 344, 812, 1314, 1367, 1619
HpySE526I	ACGT	5 cut(s)	84, 89, 234, 289, 1479
HspAI	GCGC	2 cut(s)	681, 1263
KpnI	GGTACC	1 cut(s)	1984
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	687
Kzo9I	GATC	6 cut(s)	687, 1280, 1408, 1532, 1908, 1994
LguI	GCTCTTC	1 cut(s)	811
LmnI	GCTCC	3 cut(s)	679, 964, 1649
Lsp1109I	GCAGC	4 cut(s)	87, 598, 1009, 1117
LweI	GCATC	4 cut(s)	623, 661, 1150, 1834
MabI	ACCWGGT	1 cut(s)	1731
MaeI	CTAG	2 cut(s)	942, 1658
MaeII	ACGT	5 cut(s)	84, 89, 234, 289, 1479
MaeIII	GTNAC	5 cut(s)	85, 290, 537, 934, 1237
MalI	GATC	6 cut(s)	689, 1282, 1410, 1534, 1910, 1996
MboI	GATC	6 cut(s)	687, 1280, 1408, 1532, 1908, 1994
MfeI	CAATTG	1 cut(s)	1193
MflI	RGATCY	1 cut(s)	1532
MhlI	GDGCHC	2 cut(s)	648, 1551
MlsI	TGGCCA	1 cut(s)	181
MluNI	TGGCCA	1 cut(s)	181
MlyI	GAGTC	4 cut(s)	1009, 1445, 1637, 1957
MmeI	TCCRAC	1 cut(s)	1612
Mox20I	TGGCCA	1 cut(s)	181
Mph1103I	ATGCAT	2 cut(s)	697, 1723
MreI	CGCCGGCG	1 cut(s)	68
MroNI	GCCGGC	1 cut(s)	68
MroXI	GAANNNNTTC	2 cut(s)	922, 1341
MscI	TGGCCA	1 cut(s)	181
MseI	TTAA	4 cut(s)	401, 1475, 1799, 2004
MslI	CAYNNNNRTG	3 cut(s)	1720, 1822, 1975
Msp20I	TGGCCA	1 cut(s)	181
MspCI	CTTAAG	1 cut(s)	2003
MspI	CCGG	8 cut(s)	69, 100, 141, 413, 427, 678, 1640, 2054
MspR9I	CCNGG	6 cut(s)	53, 414, 649, 678, 1733, 2054
MunI	CAATTG	1 cut(s)	1193
Mva1269I	GAATGC	1 cut(s)	1504
MvaI	CCWGG	3 cut(s)	53, 649, 1733
MvnI	CGCG	1 cut(s)	1491
MwoI	GCNNNNNNNGC	3 cut(s)	620, 680, 1271
NaeI	GCCGGC	1 cut(s)	70
NciI	CCSGG	3 cut(s)	414, 678, 2054
NcoI	CCATGG	3 cut(s)	280, 618, 1887
NdeI	CATATG	1 cut(s)	1717
NdeII	GATC	6 cut(s)	687, 1280, 1408, 1532, 1908, 1994
NgoMIV	GCCGGC	1 cut(s)	68
NlaIV	GGNNCC	8 cut(s)	145, 245, 355, 591, 904, 990, 1885, 1982
NmuCI	GTSAC	5 cut(s)	85, 290, 537, 934, 1237
NsiI	ATGCAT	2 cut(s)	697, 1723
NspI	RCATGY	4 cut(s)	699, 892, 1022, 1274
PaeI	GCATGC	1 cut(s)	1022
PagI	TCATGA	2 cut(s)	250, 580
PasI	CCCWGGG	1 cut(s)	648
PceI	AGGCCT	1 cut(s)	330
PciI	ACATGT	1 cut(s)	888
PciSI	GCTCTTC	1 cut(s)	811
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 1524
PctI	GAATGC	1 cut(s)	1504
PdiI	GCCGGC	1 cut(s)	70
PdmI	GAANNNNTTC	2 cut(s)	922, 1341
PfeI	GAWTC	3 cut(s)	130, 1307, 1466
Pfl23II	CGTACG	1 cut(s)	90
PflFI	GACNNNGTC	1 cut(s)	2054
PflMI	CCANNNNNTGG	1 cut(s)	565
PkrI	GCNGC	6 cut(s)	74, 77, 574, 613, 1024, 1132
PleI	GAGTC	4 cut(s)	1008, 1445, 1637, 1957
PpsI	GAGTC	4 cut(s)	1008, 1445, 1637, 1957
Ppu21I	YACGTR	2 cut(s)	90, 235
PscI	ACATGT	1 cut(s)	888
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	3 cut(s)	51, 647, 1731
PspGI	CCWGG	3 cut(s)	51, 647, 1731
PspLI	CGTACG	1 cut(s)	90
PspN4I	GGNNCC	8 cut(s)	145, 245, 355, 591, 904, 990, 1885, 1982
PspPI	GGNCC	5 cut(s)	353, 524, 590, 628, 731
PstI	CTGCAG	1 cut(s)	1027
PsuI	RGATCY	1 cut(s)	1532
PsyI	GACNNNGTC	1 cut(s)	2054
RsaI	GTAC	8 cut(s)	92, 509, 557, 1331, 1430, 1524, 1982, 1989
RsaNI	GTAC	8 cut(s)	91, 508, 556, 1330, 1429, 1523, 1981, 1988
RseI	CAYNNNNRTG	3 cut(s)	1720, 1822, 1975
Rsr2I	CGGWCCG	1 cut(s)	524
RsrII	CGGWCCG	1 cut(s)	524
SapI	GCTCTTC	1 cut(s)	811
SaqAI	TTAA	4 cut(s)	401, 1475, 1799, 2004
SatI	GCNGC	6 cut(s)	73, 76, 573, 612, 1023, 1131
Sau3AI	GATC	6 cut(s)	687, 1280, 1408, 1532, 1908, 1994
Sau96I	GGNCC	5 cut(s)	353, 524, 590, 628, 731
ScaI	AGTACT	1 cut(s)	1524
SchI	GAGTC	4 cut(s)	1009, 1445, 1637, 1957
ScrFI	CCNGG	6 cut(s)	53, 414, 649, 678, 1733, 2054
SduI	GDGCHC	2 cut(s)	648, 1551
SexAI	ACCWGGT	1 cut(s)	1731
SfaNI	GCATC	4 cut(s)	623, 661, 1150, 1834
SfcI	CTRYAG	1 cut(s)	1023
SgrAI	CRCCGGYG	1 cut(s)	68
SinI	GGWCC	2 cut(s)	353, 524
SmiMI	CAYNNNNRTG	3 cut(s)	1720, 1822, 1975
SmlI	CTYRAG	2 cut(s)	1007, 2003
SmoI	CTYRAG	2 cut(s)	1007, 2003
SpeI	ACTAGT	1 cut(s)	941
SphI	GCATGC	1 cut(s)	1022
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	5 cut(s)	72, 522, 572, 623, 1491
SspMI	CTAG	2 cut(s)	942, 1658
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	6 cut(s)	51, 412, 647, 676, 1731, 2052
StyI	CCWWGG	4 cut(s)	280, 618, 1569, 1887
TaaI	ACNGT	7 cut(s)	119, 270, 444, 507, 1069, 1168, 1229
TaiI	ACGT	5 cut(s)	87, 92, 237, 292, 1482
TaqI	TCGA	3 cut(s)	114, 1930, 1993
TaqII	GACCGA	1 cut(s)	541
TatI	WGTACW	2 cut(s)	1329, 1522
TauI	GCSGC	2 cut(s)	75, 575
TfiI	GAWTC	3 cut(s)	130, 1307, 1466
Tru1I	TTAA	4 cut(s)	401, 1475, 1799, 2004
Tru9I	TTAA	4 cut(s)	401, 1475, 1799, 2004
TscAI	CASTG	4 cut(s)	1032, 1171, 1255, 1824
TseFI	GTSAC	5 cut(s)	85, 290, 537, 934, 1237
TseI	GCWGC	4 cut(s)	75, 611, 1022, 1130
Tsp45I	GTSAC	5 cut(s)	85, 290, 537, 934, 1237
TspGWI	ACGGA	1 cut(s)	1533
TspRI	CASTG	4 cut(s)	1032, 1171, 1255, 1824
Tth111I	GACNNNGTC	1 cut(s)	2054
Van91I	CCANNNNNTGG	1 cut(s)	565
Vha464I	CTTAAG	1 cut(s)	2003
VneI	GTGCAC	1 cut(s)	1547
VpaK11BI	GGWCC	2 cut(s)	353, 524
XbaI	TCTAGA	1 cut(s)	1657
XceI	RCATGY	4 cut(s)	699, 892, 1022, 1274
XmiI	GTMKAC	4 cut(s)	483, 979, 1104, 1386
XmnI	GAANNNNTTC	2 cut(s)	922, 1341
XspI	CTAG	2 cut(s)	942, 1658
ZrmI	AGTACT	1 cut(s)	1524
Zsp2I	ATGCAT	2 cut(s)	697, 1723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.