Rorug06G0373900

GPN-loop GTPase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
52008998 .. 52011024
2027 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0373900.1

Sequence Viewer

Length: 1140 bp
ATGCTCTCACTGAAACTGAGACCTCTCTCAACCATGAAGAAGAGACAAATCCCAATCCAATCGCCTCCATCCACCCCTCCAACCCCACAAACCCTTTTAAGCTCCAAATCCAAAAGACCCAAAACCCTAAACCTCAAATCCCCCAAATGGGTCCCACTCAACCTCACCCAGTCCGAGCTCTCCCTGCCCCTCACTTTCCCCACCGGCCAAACCTTCCGGTGGAGACAAACCGGCCCTCTTCAGTACACCGGCGTTGTTGGGTCCCATCTAGTCTCCCTCCAGCACCTCCAAAACGGCGACGTTTCCTACTGCCTTCACCAATCCGCCACTTCCCAGTCCCATGCCGTGTCGGCTCTGCTCGATTTTCTCAACATGGGTATTTCCCTGGCCGGAATTTGGGAGGTTTTCTCGGCTTCCGATTCCAGGTTTGCCGAGCTCGCCACCCATTTGGGCGGCGCTAGAGTTCTCAGGCAAGACCCACTTGAGTGTTTGATTCAGTTTCTGTGTTCTTCAAATAACAACATTCAGAGAATTACCAAAATGGTGGACTTTGTGTCTTCACTGGGGACCCATTTGGGGTCTGTTGCAGGTTTTGAGTTCCATGAATTTCCATCCTTGGATCGCTTGTCAATGGTGTCAGAACAAGAGCTCAGAGAGGCCGGTTTCGGTTATAGGGCTAAGTACTTAACTGGCACTGTGAAGGCATTGCAGTCGAAACCTGGGGGAGGTGAAGAGTGGCTTTTGTCTCTTCGGAAACTTGAACTCGAAGAGGTGATTGATGCTCTTACCACATTGCCTGGAGTTGGTCCCAAGGTGGCAGCATGTATAGCTCTTTTTTCGCTTGATCAACACAATGCCATTCCTGTTGATACACACGTGTGGAAGATTGCTACAAGATACCTCATACCTGAGCTAGCAGGGGCTCGTCTGACACCGAAGCTCTGCGGCCGCGTGGCGGAGGCATTTGTGAGTAAATATGGGAAATATGCTGGATGGGCTCAAACTCTGCTATTTGTTGCTGAATTGCCTTCACAAAAAGCCCTCCTACCACCACATTTTTCAAATGCCAAAGAGAGTAAATCTGCAAAGGGAAAGGGCGGTGGAGTGCAGACTGTAGCGGATGCCACAAACAGTGAATAA

Protein Analysis

379

Amino Acids

41.32

Weight (kDa)

9.35

Isoelectric Point (pI)

43.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OGG_N PF07934 53 - 164 1.1e-23 8-oxoguanine DNA glycosylase, N-terminal domain
HhH-GPD PF00730 166 - 302 9.1e-09 HhH-GPD superfamily base excision DNA repair protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 578
AccII CGCG 1 cut(s) 951
AciI CCGC 7 cut(s) 324, 453, 945, 949, 956, 1098, 1118
AclWI GGATC 1 cut(s) 627
AcoI YGGCCR 3 cut(s) 205, 387, 946
AcsI RAATTY 2 cut(s) 393, 605
AcuI CTGAAG 1 cut(s) 224
AcvI CACGTG 1 cut(s) 877
AfaI GTAC 2 cut(s) 245, 683
AfiI CCNNNNNNNGG 9 cut(s) 147, 148, 219, 396, 423, 576, 725, 803, 955
AflIII ACRYGT 2 cut(s) 874, 876
AgsI TTSAA 3 cut(s) 513, 761, 1062
AhdI GACNNNNNGTC 1 cut(s) 553
AjnI CCWGG 4 cut(s) 384, 422, 718, 796
AleI CACNNNNGTG 2 cut(s) 484, 877
AluBI AGCT 7 cut(s) 102, 178, 436, 649, 830, 913, 940
AluI AGCT 7 cut(s) 102, 178, 436, 649, 830, 913, 940
Alw21I GWGCWC 3 cut(s) 180, 438, 651
Alw26I GTCTC 5 cut(s) 13, 37, 217, 277, 750
AlwI GGATC 1 cut(s) 627
AlwNI CAGNNNCTG 1 cut(s) 502
AoxI GGCC 5 cut(s) 205, 232, 387, 657, 946
ApeKI GCWGC 1 cut(s) 818
ApoI RAATTY 2 cut(s) 393, 605
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 5 cut(s) 151, 233, 261, 567, 806
AsuHPI GGTGA 4 cut(s) 157, 308, 740, 784
AsuNHI GCTAGC 1 cut(s) 913
AvaII GGWCC 4 cut(s) 151, 261, 567, 806
BaeI ACNNNNGTAYC 2 cut(s) 861, 894
BanII GRGCYC 5 cut(s) 180, 438, 651, 925, 1000
BbrPI CACGTG 1 cut(s) 877
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 3 cut(s) 180, 438, 651
BbvI GCAGC 1 cut(s) 830
BccI CCATC 4 cut(s) 76, 273, 619, 987
BceAI ACGGC 2 cut(s) 310, 329
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BciT130I CCWGG 4 cut(s) 386, 424, 720, 798
BclI TGATCA 1 cut(s) 844
BcoDI GTCTC 5 cut(s) 13, 37, 217, 277, 750
BfaI CTAG 3 cut(s) 269, 459, 914
BfmI CTRYAG 1 cut(s) 1113
BfoI RGCGCY 1 cut(s) 459
BfuAI ACCTGC 1 cut(s) 578
BglI GCCNNNNNGGC 1 cut(s) 350
BisI GCNGC 4 cut(s) 454, 819, 946, 949
BlsI GCNGC 4 cut(s) 455, 820, 947, 950
BmcAI AGTACT 1 cut(s) 683
Bme1390I CCNGG 4 cut(s) 386, 424, 720, 798
Bme18I GGWCC 4 cut(s) 151, 261, 567, 806
BmeRI GACNNNNNGTC 1 cut(s) 553
BmgT120I GGNCC 5 cut(s) 151, 233, 261, 567, 806
BmiI GGNNCC 7 cut(s) 152, 153, 262, 263, 568, 569, 808
BmrFI CCNGG 4 cut(s) 386, 424, 720, 798
BmrI ACTGGG 3 cut(s) 163, 328, 572
BmsI GCATC 2 cut(s) 769, 1111
BmtI GCTAGC 1 cut(s) 917
BmuI ACTGGG 3 cut(s) 163, 328, 572
BpiI GAAGAC 1 cut(s) 549
BplI GAGNNNNNCTC 2 cut(s) 392, 424
BpmI CTGGAG 2 cut(s) 263, 819
Bpu10I CCTNAGC 1 cut(s) 909
BpuEI CTTGAG 1 cut(s) 503
BsaAI YACGTR 1 cut(s) 877
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 4 cut(s) 384, 615, 719, 810
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 9 cut(s) 147, 148, 219, 396, 423, 576, 725, 803, 955
Bse118I RCCGGY 4 cut(s) 203, 230, 248, 659
Bse1I ACTGG 4 cut(s) 169, 334, 567, 694
Bse3DI GCAATG 2 cut(s) 704, 791
BseBI CCWGG 4 cut(s) 386, 424, 720, 798
BseDI CCNNGG 4 cut(s) 384, 615, 719, 810
BseGI GGATG 4 cut(s) 68, 611, 998, 1126
BseLI CCNNNNNNNGG 9 cut(s) 147, 148, 219, 396, 423, 576, 725, 803, 955
BseMI GCAATG 2 cut(s) 704, 791
BseMII CTCAG 4 cut(s) 8, 481, 664, 900
BseNI ACTGG 4 cut(s) 169, 334, 567, 694
BseX3I CGGCCG 1 cut(s) 946
BseXI GCAGC 1 cut(s) 830
BsgI GTGCAG 1 cut(s) 1127
Bsh1236I CGCG 1 cut(s) 951
Bsh1285I CGRYCG 1 cut(s) 949
BshFI GGCC 5 cut(s) 207, 234, 389, 659, 948
BsiEI CGRYCG 1 cut(s) 949
BsiHKAI GWGCWC 3 cut(s) 180, 438, 651
BsiSI CCGG 6 cut(s) 204, 217, 231, 249, 390, 660
BslFI GGGAC 5 cut(s) 137, 247, 322, 580, 792
BslI CCNNNNNNNGG 9 cut(s) 147, 148, 219, 396, 423, 576, 725, 803, 955
BsmAI GTCTC 5 cut(s) 13, 37, 217, 277, 750
BsmFI GGGAC 5 cut(s) 137, 247, 322, 580, 792
BsnI GGCC 5 cut(s) 207, 234, 389, 659, 948
Bso31I GGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 5 cut(s) 180, 438, 651, 925, 1000
Bsp143I GATC 2 cut(s) 619, 844
BspACI CCGC 7 cut(s) 324, 453, 945, 949, 956, 1098, 1118
BspANI GGCC 5 cut(s) 207, 234, 389, 659, 948
BspCNI CTCAG 4 cut(s) 9, 480, 663, 901
BspFNI CGCG 1 cut(s) 951
BspLI GGNNCC 7 cut(s) 152, 153, 262, 263, 568, 569, 808
BspMI ACCTGC 1 cut(s) 578
BspOI GCTAGC 1 cut(s) 917
BspPI GGATC 1 cut(s) 627
BspTNI GGTCTC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 704, 791
BsrFI RCCGGY 4 cut(s) 203, 230, 248, 659
BsrI ACTGG 4 cut(s) 169, 334, 567, 694
BssAI RCCGGY 4 cut(s) 203, 230, 248, 659
BssECI CCNNGG 4 cut(s) 384, 615, 719, 810
BssMI GATC 2 cut(s) 619, 844
BssT1I CCWWGG 2 cut(s) 615, 810
Bst2UI CCWGG 4 cut(s) 386, 424, 720, 798
Bst4CI ACNGT 3 cut(s) 697, 1114, 1133
Bst6I CTCTTC 5 cut(s) 35, 243, 726, 753, 762
BstBAI YACGTR 1 cut(s) 877
BstC8I GCNNGC 2 cut(s) 438, 915
BstDEI CTNAG 5 cut(s) 17, 467, 650, 678, 909
BstENI CCTNNNNNAGG 1 cut(s) 723
BstF5I GGATG 4 cut(s) 68, 611, 998, 1126
BstFNI CGCG 1 cut(s) 951
BstH2I RGCGCY 1 cut(s) 459
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 2 cut(s) 622, 847
BstMAI GTCTC 5 cut(s) 13, 37, 217, 277, 750
BstMBI GATC 2 cut(s) 619, 844
BstMCI CGRYCG 1 cut(s) 949
BstMWI GCNNNNNNNGC 5 cut(s) 184, 350, 437, 827, 995
BstNI CCWGG 4 cut(s) 386, 424, 720, 798
BstNSI RCATGY 1 cut(s) 825
BstSCI CCNGG 4 cut(s) 384, 422, 718, 796
BstSFI CTRYAG 1 cut(s) 1113
BstUI CGCG 1 cut(s) 951
BstV1I GCAGC 1 cut(s) 830
BstV2I GAAGAC 1 cut(s) 549
BstXI CCANNNNNNTGG 2 cut(s) 448, 544
BstZI CGGCCG 1 cut(s) 946
BsuRI GGCC 5 cut(s) 207, 234, 389, 659, 948
BtsCI GGATG 4 cut(s) 68, 611, 998, 1126
BtsIMutI CAGTG 4 cut(s) 8, 560, 693, 1138
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 2 cut(s) 438, 915
CaiI CAGNNNCTG 1 cut(s) 502
CciNI GCGGCCGC 1 cut(s) 946
CfoI GCGC 1 cut(s) 458
Cfr10I RCCGGY 4 cut(s) 203, 230, 248, 659
Cfr13I GGNCC 5 cut(s) 151, 233, 261, 567, 806
Csp6I GTAC 2 cut(s) 244, 682
CviAII CATG 5 cut(s) 34, 341, 373, 602, 822
CviQI GTAC 2 cut(s) 244, 682
DdeI CTNAG 5 cut(s) 17, 467, 650, 678, 909
DpnI GATC 2 cut(s) 621, 846
DpnII GATC 2 cut(s) 619, 844
DriI GACNNNNNGTC 1 cut(s) 553
EaeI YGGCCR 3 cut(s) 205, 387, 946
EagI CGGCCG 1 cut(s) 946
Eam1104I CTCTTC 5 cut(s) 35, 243, 726, 753, 762
Eam1105I GACNNNNNGTC 1 cut(s) 553
EarI CTCTTC 5 cut(s) 35, 243, 726, 753, 762
EciI GGCGGA 2 cut(s) 313, 971
Ecl136II GAGCTC 3 cut(s) 178, 436, 649
EclXI CGGCCG 1 cut(s) 946
Eco130I CCWWGG 2 cut(s) 615, 810
Eco24I GRGCYC 5 cut(s) 180, 438, 651, 925, 1000
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 4 cut(s) 151, 261, 567, 806
Eco52I CGGCCG 1 cut(s) 946
Eco53kI GAGCTC 3 cut(s) 178, 436, 649
Eco57I CTGAAG 1 cut(s) 224
Eco72I CACGTG 1 cut(s) 877
EcoICRI GAGCTC 3 cut(s) 178, 436, 649
EcoNI CCTNNNNNAGG 1 cut(s) 723
EcoO109I RGGNCCY 3 cut(s) 151, 261, 567
EcoRII CCWGG 4 cut(s) 384, 422, 718, 796
EcoT14I CCWWGG 2 cut(s) 615, 810
EcoT38I GRGCYC 5 cut(s) 180, 438, 651, 925, 1000
ErhI CCWWGG 2 cut(s) 615, 810
FaeI CATG 5 cut(s) 37, 344, 376, 605, 825
FalI AAGNNNNNCTT 4 cut(s) 465, 497, 723, 755
FaqI GGGAC 5 cut(s) 137, 247, 322, 580, 792
FatI CATG 5 cut(s) 33, 340, 372, 601, 821
FbaI TGATCA 1 cut(s) 844
Fnu4HI GCNGC 4 cut(s) 454, 819, 946, 949
FokI GGATG 4 cut(s) 55, 598, 1005, 1133
FriOI GRGCYC 5 cut(s) 180, 438, 651, 925, 1000
Fsp4HI GCNGC 4 cut(s) 454, 819, 946, 949
FspBI CTAG 3 cut(s) 269, 459, 914
GlaI GCGC 1 cut(s) 457
GluI GCNGC 4 cut(s) 454, 819, 946, 949
GsuI CTGGAG 2 cut(s) 263, 819
HaeII RGCGCY 1 cut(s) 459
HaeIII GGCC 5 cut(s) 207, 234, 389, 659, 948
HapII CCGG 6 cut(s) 204, 217, 231, 249, 390, 660
HhaI GCGC 1 cut(s) 458
Hin1II CATG 5 cut(s) 37, 344, 376, 605, 825
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HinfI GANTC 2 cut(s) 419, 493
HpaII CCGG 6 cut(s) 204, 217, 231, 249, 390, 660
HphI GGTGA 4 cut(s) 157, 308, 740, 784
Hpy166II GTNNAC 2 cut(s) 246, 547
Hpy188I TCNGA 7 cut(s) 175, 418, 528, 640, 653, 753, 930
Hpy8I GTNNAC 2 cut(s) 246, 547
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 4 cut(s) 223, 323, 694, 1038
HpyCH4III ACNGT 3 cut(s) 697, 1114, 1133
HpyCH4IV ACGT 2 cut(s) 300, 876
HpyCH4V TGCA 4 cut(s) 587, 709, 1085, 1108
HpyF10VI GCNNNNNNNGC 5 cut(s) 184, 350, 437, 827, 995
HpyF3I CTNAG 5 cut(s) 17, 467, 650, 678, 909
HpySE526I ACGT 2 cut(s) 300, 876
Hsp92II CATG 5 cut(s) 37, 344, 376, 605, 825
HspAI GCGC 1 cut(s) 456
KflI GGGWCCC 3 cut(s) 151, 261, 567
Ksp22I TGATCA 1 cut(s) 844
Kzo9I GATC 2 cut(s) 619, 844
LmnI GCTCC 1 cut(s) 107
Lsp1109I GCAGC 1 cut(s) 830
LweI GCATC 2 cut(s) 769, 1111
MaeI CTAG 3 cut(s) 269, 459, 914
MaeII ACGT 2 cut(s) 300, 876
MalI GATC 2 cut(s) 621, 846
MboI GATC 2 cut(s) 619, 844
MboII GAAGA 9 cut(s) 49, 52, 230, 501, 549, 740, 743, 779, 895
MhlI GDGCHC 5 cut(s) 180, 438, 651, 925, 1000
MluCI AATT 4 cut(s) 393, 531, 605, 1022
MmeI TCCRAC 1 cut(s) 104
MseI TTAA 2 cut(s) 98, 686
MslI CAYNNNNRTG 2 cut(s) 484, 877
MspI CCGG 6 cut(s) 204, 217, 231, 249, 390, 660
MspR9I CCNGG 4 cut(s) 386, 424, 720, 798
MvaI CCWGG 4 cut(s) 386, 424, 720, 798
MvnI CGCG 1 cut(s) 951
MwoI GCNNNNNNNGC 5 cut(s) 184, 350, 437, 827, 995
NdeII GATC 2 cut(s) 619, 844
NheI GCTAGC 1 cut(s) 913
NlaIII CATG 5 cut(s) 37, 344, 376, 605, 825
NlaIV GGNNCC 7 cut(s) 152, 153, 262, 263, 568, 569, 808
NmeAIII GCCGAG 2 cut(s) 389, 457
NotI GCGGCCGC 1 cut(s) 946
NspI RCATGY 1 cut(s) 825
OliI CACNNNNGTG 2 cut(s) 484, 877
PfeI GAWTC 2 cut(s) 419, 493
PkrI GCNGC 4 cut(s) 455, 820, 947, 950
PmaCI CACGTG 1 cut(s) 877
PmlI CACGTG 1 cut(s) 877
Ppu21I YACGTR 1 cut(s) 877
PpuMI RGGWCCY 3 cut(s) 151, 261, 567
Psp124BI GAGCTC 3 cut(s) 180, 438, 651
Psp5II RGGWCCY 3 cut(s) 151, 261, 567
Psp6I CCWGG 4 cut(s) 384, 422, 718, 796
PspCI CACGTG 1 cut(s) 877
PspGI CCWGG 4 cut(s) 384, 422, 718, 796
PspN4I GGNNCC 7 cut(s) 152, 153, 262, 263, 568, 569, 808
PspPI GGNCC 5 cut(s) 151, 233, 261, 567, 806
PspPPI RGGWCCY 3 cut(s) 151, 261, 567
PstNI CAGNNNCTG 1 cut(s) 502
RsaI GTAC 2 cut(s) 245, 683
RsaNI GTAC 2 cut(s) 244, 682
RseI CAYNNNNRTG 2 cut(s) 484, 877
SacI GAGCTC 3 cut(s) 180, 438, 651
SaqAI TTAA 2 cut(s) 98, 686
SatI GCNGC 4 cut(s) 454, 819, 946, 949
Sau3AI GATC 2 cut(s) 619, 844
Sau96I GGNCC 5 cut(s) 151, 233, 261, 567, 806
ScaI AGTACT 1 cut(s) 683
ScrFI CCNGG 4 cut(s) 386, 424, 720, 798
SduI GDGCHC 5 cut(s) 180, 438, 651, 925, 1000
SfaNI GCATC 2 cut(s) 769, 1111
SfcI CTRYAG 1 cut(s) 1113
SgrAI CRCCGGYG 1 cut(s) 248
SinI GGWCC 4 cut(s) 151, 261, 567, 806
SmiMI CAYNNNNRTG 2 cut(s) 484, 877
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 4 cut(s) 393, 531, 605, 1022
SsiI CCGC 7 cut(s) 324, 453, 945, 949, 956, 1098, 1118
SspMI CTAG 3 cut(s) 269, 459, 914
SstI GAGCTC 3 cut(s) 180, 438, 651
StyD4I CCNGG 4 cut(s) 384, 422, 718, 796
StyI CCWWGG 2 cut(s) 615, 810
TaaI ACNGT 3 cut(s) 697, 1114, 1133
TaiI ACGT 2 cut(s) 303, 879
TaqI TCGA 3 cut(s) 360, 713, 765
TasI AATT 4 cut(s) 393, 531, 605, 1022
TatI WGTACW 2 cut(s) 243, 681
TauI GCSGC 3 cut(s) 456, 948, 951
TfiI GAWTC 2 cut(s) 419, 493
Tru1I TTAA 2 cut(s) 98, 686
Tru9I TTAA 2 cut(s) 98, 686
TscAI CASTG 4 cut(s) 15, 567, 700, 1138
TseI GCWGC 1 cut(s) 818
TspDTI ATGAA 2 cut(s) 50, 618
TspRI CASTG 4 cut(s) 15, 567, 700, 1138
VpaK11BI GGWCC 4 cut(s) 151, 261, 567, 806
XagI CCTNNNNNAGG 1 cut(s) 723
XapI RAATTY 2 cut(s) 393, 605
XceI RCATGY 1 cut(s) 825
XspI CTAG 3 cut(s) 269, 459, 914
ZrmI AGTACT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.