Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Forward (+)

5229133 .. 5231822

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGTTTTTGGGCAAGTGGTGATCGGCCCGCCTGGGTCAGGAAAGACCACTTACTGCAATGGCATGTCTCAGTTCCTCCAGCTCATCGGAAGGAAAGTTGCTGTGGTAAACTTGGATCCTGCCAACGACGCATTGCCGTATGAATGTGCTGTGAACATGGAGGAGCTTATAAAACTGAGTGATGTGATGGTGGAGCACTCTCTTGGTCCCAATGGAGGTCTTGTATATTGCATGGATTATCTAGAGAAGAATATTGACTGGTTGGAGGCCAAGTTGAAACCTCTTATAAAAGCGATTAAAAATTTTATGATCGATCTCCCTGGCCAAGTGGAACTATTCTTTCTTCACTCCAACGCCAAGAACGTTATCATGAAACTCGTGAAGAAGTTAAACCTCAGGTTGACTGCAGTACATTTGGTTGATGCCCATCTTTGCAGCGACCCTGGAAAGTATGTTAGTGCATTGATTCTCTCTTTATCAACCATGCTTCATATGGAACTCCCGCACATAAATGTCTTGTCTAAGATTGATCTAATAGAGAGCTACGGAAAGCTAGCTTTCAACCTCGATTTCTTCACAGATGTAGAGGATTTATCTTATCTTCAGTACAAGCTTGATCAGGATCCTCGCTCGGCTAAGTACAGAAAGCTTACTAAAGAGCTTTGTGAAGTAATTGAAGATTACAGTCTTGTCAATTTTGCAACCTTAGATATTCAGGATAAAGAGAGTGTTGGAAATCTAGTTAAACTGATAGACAAGAGCAACGGGTACATTTTTGCTGGCATAGATGCGAGTGCAGTCGAATTCAGTAAGATTGCGGTTGGTCCAGTTGATTGGGATTATTACAGTTGCAGCAGTGCAAGAGAAGTACATGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

294

Amino Acids

32.72

Weight (kDa)

5.2

Isoelectric Point (pI)

23.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	170, 287
AciI	CCGC	3 cut(s)	29, 503, 818
AclI	AACGTT	1 cut(s)	363
AclWI	GGATC	4 cut(s)	110, 123, 617, 630
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	2 cut(s)	301, 803
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	5 cut(s)	411, 608, 641, 770, 870
AfiI	CCNNNNNNNGG	2 cut(s)	38, 215
AgsI	TTSAA	3 cut(s)	277, 562, 677
AjnI	CCWGG	3 cut(s)	31, 319, 442
AluBI	AGCT	8 cut(s)	82, 166, 543, 553, 557, 613, 649, 661
AluI	AGCT	8 cut(s)	82, 166, 543, 553, 557, 613, 649, 661
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	4 cut(s)	110, 123, 617, 630
AoxI	GGCC	3 cut(s)	25, 267, 322
ApeKI	GCWGC	2 cut(s)	435, 852
ApoI	RAATTY	2 cut(s)	301, 803
AspS9I	GGNCC	3 cut(s)	26, 206, 824
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	553
AvaII	GGWCC	2 cut(s)	206, 824
AxyI	CCTNAGG	1 cut(s)	395
BalI	TGGCCA	1 cut(s)	324
BamHI	GGATCC	2 cut(s)	115, 622
BauI	CACGAG	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	2 cut(s)	447, 864
BccI	CCATC	2 cut(s)	181, 435
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	3 cut(s)	33, 321, 444
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	3 cut(s)	242, 554, 740
BfmI	CTRYAG	1 cut(s)	405
BisI	GCNGC	2 cut(s)	436, 853
BlsI	GCNGC	2 cut(s)	437, 854
Bme1390I	CCNGG	3 cut(s)	33, 321, 444
Bme18I	GGWCC	2 cut(s)	206, 824
BmgT120I	GGNCC	3 cut(s)	26, 206, 824
BmiI	GGNNCC	3 cut(s)	117, 208, 624
BmrFI	CCNGG	3 cut(s)	33, 321, 444
BmsI	GCATC	2 cut(s)	412, 778
BmtI	GCTAGC	1 cut(s)	557
BpmI	CTGGAG	1 cut(s)	62
Bsa29I	ATCGAT	1 cut(s)	312
BsaBI	GATNNNNATC	2 cut(s)	426, 621
BsaJI	CCNNGG	3 cut(s)	32, 319, 442
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 215
Bse1I	ACTGG	2 cut(s)	263, 827
Bse21I	CCTNAGG	1 cut(s)	395
Bse3DI	GCAATG	2 cut(s)	64, 131
Bse8I	GATNNNNATC	2 cut(s)	426, 621
BseBI	CCWGG	3 cut(s)	33, 321, 444
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	32, 319, 442
BseJI	GATNNNNATC	2 cut(s)	426, 621
BseLI	CCNNNNNNNGG	2 cut(s)	38, 215
BseMI	GCAATG	2 cut(s)	64, 131
BseMII	CTCAG	3 cut(s)	83, 167, 409
BseNI	ACTGG	2 cut(s)	263, 827
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	447, 864
BsgI	GTGCAG	1 cut(s)	816
BshFI	GGCC	3 cut(s)	27, 269, 324
BshVI	ATCGAT	1 cut(s)	312
BsiHKAI	GWGCWC	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	38, 215
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	27, 269, 324
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	7 cut(s)	21, 115, 309, 313, 529, 616, 622
BspACI	CCGC	3 cut(s)	29, 503, 818
BspANI	GGCC	3 cut(s)	27, 269, 324
BspCNI	CTCAG	3 cut(s)	82, 168, 408
BspDI	ATCGAT	1 cut(s)	312
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	117, 208, 624
BspMAI	CTGCAG	1 cut(s)	409
BspOI	GCTAGC	1 cut(s)	557
BspPI	GGATC	4 cut(s)	110, 123, 617, 630
BsrDI	GCAATG	2 cut(s)	64, 131
BsrI	ACTGG	2 cut(s)	263, 827
BssECI	CCNNGG	3 cut(s)	32, 319, 442
BssMI	GATC	7 cut(s)	21, 115, 309, 313, 529, 616, 622
BssSI	CACGAG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	377
Bst2UI	CCWGG	3 cut(s)	33, 321, 444
Bst4CI	ACNGT	2 cut(s)	686, 848
BstC8I	GCNNGC	3 cut(s)	29, 555, 781
BstDEI	CTNAG	6 cut(s)	69, 176, 395, 522, 636, 706
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstKTI	GATC	7 cut(s)	24, 118, 312, 316, 532, 619, 625
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	7 cut(s)	21, 115, 309, 313, 529, 616, 622
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	3 cut(s)	33, 321, 444
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	31, 319, 442
BstSFI	CTRYAG	1 cut(s)	405
BstV1I	GCAGC	2 cut(s)	447, 864
BstX2I	RGATCY	2 cut(s)	115, 622
BstXI	CCANNNNNNTGG	1 cut(s)	834
BstYI	RGATCY	2 cut(s)	115, 622
Bsu15I	ATCGAT	1 cut(s)	312
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	27, 269, 324
BsuTUI	ATCGAT	1 cut(s)	312
BtsI	GCAGTG	1 cut(s)	862
BtsIMutI	CAGTG	1 cut(s)	862
Cac8I	GCNNGC	3 cut(s)	29, 555, 781
CciI	TCATGA	1 cut(s)	369
Cfr13I	GGNCC	3 cut(s)	26, 206, 824
ClaI	ATCGAT	1 cut(s)	312
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	5 cut(s)	410, 607, 640, 769, 869
CviAII	CATG	6 cut(s)	64, 157, 232, 370, 484, 872
CviQI	GTAC	5 cut(s)	410, 607, 640, 769, 869
DdeI	CTNAG	6 cut(s)	69, 176, 395, 522, 636, 706
DpnI	GATC	7 cut(s)	23, 117, 311, 315, 531, 618, 624
DpnII	GATC	7 cut(s)	21, 115, 309, 313, 529, 616, 622
EaeI	YGGCCR	1 cut(s)	322
Eco47I	GGWCC	2 cut(s)	206, 824
Eco57I	CTGAAG	1 cut(s)	587
Eco81I	CCTNAGG	1 cut(s)	395
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	803
EcoRII	CCWGG	3 cut(s)	31, 319, 442
FaeI	CATG	6 cut(s)	67, 160, 235, 373, 487, 875
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	6 cut(s)	63, 156, 231, 369, 483, 871
FauI	CCCGC	2 cut(s)	36, 510
FauNDI	CATATG	1 cut(s)	492
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	2 cut(s)	436, 853
Fsp4HI	GCNGC	2 cut(s)	436, 853
FspBI	CTAG	3 cut(s)	242, 554, 740
GluI	GCNGC	2 cut(s)	436, 853
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	3 cut(s)	27, 269, 324
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	6 cut(s)	67, 160, 235, 373, 487, 875
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	2 cut(s)	611, 647
HinfI	GANTC	1 cut(s)	466
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	3 cut(s)	109, 154, 402
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	6 cut(s)	39, 242, 370, 379, 620, 716
Hpy8I	GTNNAC	3 cut(s)	109, 154, 402
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	84, 869
HpyCH4III	ACNGT	2 cut(s)	686, 848
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	9 cut(s)	57, 231, 407, 435, 461, 701, 797, 852, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	6 cut(s)	69, 176, 395, 522, 636, 706
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	6 cut(s)	67, 160, 235, 373, 487, 875
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	7 cut(s)	21, 115, 309, 313, 529, 616, 622
LmnI	GCTCC	2 cut(s)	163, 193
Lsp1109I	GCAGC	2 cut(s)	447, 864
LweI	GCATC	2 cut(s)	412, 778
MaeI	CTAG	3 cut(s)	242, 554, 740
MaeII	ACGT	1 cut(s)	363
MalI	GATC	7 cut(s)	23, 117, 311, 315, 531, 618, 624
MboI	GATC	7 cut(s)	21, 115, 309, 313, 529, 616, 622
MboII	GAAGA	6 cut(s)	259, 335, 394, 565, 593, 689
MflI	RGATCY	2 cut(s)	115, 622
MhlI	GDGCHC	1 cut(s)	198
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	4 cut(s)	301, 672, 694, 803
MluNI	TGGCCA	1 cut(s)	324
MmeI	TCCRAC	3 cut(s)	243, 375, 712
MnlI	CCTC	9 cut(s)	86, 154, 209, 259, 291, 404, 575, 580, 636
Mox20I	TGGCCA	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	3 cut(s)	297, 389, 744
MslI	CAYNNNNRTG	1 cut(s)	510
Msp20I	TGGCCA	1 cut(s)	324
MspR9I	CCNGG	3 cut(s)	33, 321, 444
MvaI	CCWGG	3 cut(s)	33, 321, 444
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	7 cut(s)	21, 115, 309, 313, 529, 616, 622
NheI	GCTAGC	1 cut(s)	553
NlaIII	CATG	6 cut(s)	67, 160, 235, 373, 487, 875
NlaIV	GGNNCC	3 cut(s)	117, 208, 624
NmeAIII	GCCGAG	1 cut(s)	611
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	437, 854
PsiI	TTATAA	2 cut(s)	170, 287
Psp1406I	AACGTT	1 cut(s)	363
Psp6I	CCWGG	3 cut(s)	31, 319, 442
PspGI	CCWGG	3 cut(s)	31, 319, 442
PspN4I	GGNNCC	3 cut(s)	117, 208, 624
PspPI	GGNCC	3 cut(s)	26, 206, 824
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	115, 622
RsaI	GTAC	5 cut(s)	411, 608, 641, 770, 870
RsaNI	GTAC	5 cut(s)	410, 607, 640, 769, 869
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	297, 389, 744
SatI	GCNGC	2 cut(s)	436, 853
Sau3AI	GATC	7 cut(s)	21, 115, 309, 313, 529, 616, 622
Sau96I	GGNCC	3 cut(s)	26, 206, 824
ScrFI	CCNGG	3 cut(s)	33, 321, 444
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	2 cut(s)	412, 778
SfcI	CTRYAG	1 cut(s)	405
SinI	GGWCC	2 cut(s)	206, 824
SmiMI	CAYNNNNRTG	1 cut(s)	510
Sse9I	AATT	4 cut(s)	301, 672, 694, 803
SsiI	CCGC	3 cut(s)	29, 503, 818
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	3 cut(s)	242, 554, 740
StyD4I	CCNGG	3 cut(s)	31, 319, 442
TaaI	ACNGT	2 cut(s)	686, 848
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	3 cut(s)	312, 567, 801
TasI	AATT	4 cut(s)	301, 672, 694, 803
TatI	WGTACW	4 cut(s)	409, 606, 639, 868
TfiI	GAWTC	1 cut(s)	466
Tru1I	TTAA	3 cut(s)	297, 389, 744
Tru9I	TTAA	3 cut(s)	297, 389, 744
TscAI	CASTG	1 cut(s)	862
TseI	GCWGC	2 cut(s)	435, 852
TspDTI	ATGAA	3 cut(s)	156, 386, 479
TspGWI	ACGGA	1 cut(s)	561
TspRI	CASTG	1 cut(s)	862
VpaK11BI	GGWCC	2 cut(s)	206, 824
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	301, 803
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	3 cut(s)	242, 554, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.