Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Forward (+)

36457697 .. 36461458

Gene Structure 3762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G422300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGTTTTTGGGCAAGTGGTGATTGGTCCACCTGGGTCAGGGAAGACCACCTACTGCAATGGCATGTCTCAGTTTCTCCAACTCATTGGAAGAAAAGTTGCTGTTATCAATTTGGATCCTGCTAACGATGCATTGCCATATGAATGTGCTGTGAACATAGAGGATCTTATAAAACTAAGTGATGTGATGATGGAGCACGGTCTTGGTCCAAATGGAGGTCTTGTATATTGCATGGATTATCTAGAGAAGAATATTGACTGGTTGGAGGCGAAGTTGAAACCTCTTATAAAAGATCACTACATTCTCTTTGATTTCCCCGGCCAAGTCGAACTATTCTTTCTTCACTCCAGCGCCAAGAATGTTATCATGAAACTCGTAAAGAAGTTAAACCTCAGGTTGACTGCAGTTCATTTGGTTGATGCCCACCTTTGCAGTGACCCTGGGAAGTATGTTAGTGCATTGCTTCTCTCTTTATCAACCATGCTTCATATGGAACTCCCGCACATAAATGTCTTGTCTAAGATTGATTTAATAGAGAGTTATGGAAAGCTAGCTTTCAACCTTGATTTTTATACAGATGTAGAGAATCTATCTTATCTTCAATACAGTCTTGATCAGGATCCTCGCTCGGCTAAGTACAGAAAGCTCACTAAGGAGATTTGTGATGTAGTAGAAGATTACAGTCTTGTCAATTTTGCGACTTTAGATATTCAGGATAAAGAGAGTGTGGGGAATCTAGTTAAACTGATAGACAAGAGCAATGGATACATTTTTGCTGGCATAGAAGCGAGCGCAGTAGAGTTCAGCAAGATTGCAGTTGGTCCTGTTGATTGGGATTATTACAGAGTTGCAGCGGTGCAAGAGAAGTACATGAAGGATGACGAAAATTTTGATGATGATGAACACTCTGGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

306

Amino Acids

34.29

Weight (kDa)

4.82

Isoelectric Point (pI)

28.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	170, 287
AciI	CCGC	2 cut(s)	500, 854
AclWI	GGATC	5 cut(s)	110, 123, 171, 614, 627
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	886
AfaI	GTAC	2 cut(s)	638, 869
AfiI	CCNNNNNNNGG	2 cut(s)	38, 215
AgsI	TTSAA	3 cut(s)	277, 559, 602
AjnI	CCWGG	2 cut(s)	31, 439
AluBI	AGCT	3 cut(s)	550, 554, 646
AluI	AGCT	3 cut(s)	550, 554, 646
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	72, 906
AlwI	GGATC	5 cut(s)	110, 123, 171, 614, 627
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	851
ApoI	RAATTY	1 cut(s)	886
ArsI	GACNNNNNNTTYG	2 cut(s)	872, 904
AspLEI	GCGC	2 cut(s)	353, 794
AspS9I	GGNCC	3 cut(s)	26, 206, 821
AsuC2I	CCSGG	1 cut(s)	318
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	550
AvaII	GGWCC	3 cut(s)	26, 206, 821
AxyI	CCTNAGG	1 cut(s)	392
BamHI	GGATCC	2 cut(s)	115, 619
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	863
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	2 cut(s)	33, 441
BciVI	GTATCC	1 cut(s)	758
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	318
BcoDI	GTCTC	2 cut(s)	72, 906
BfaI	CTAG	3 cut(s)	242, 551, 737
BfmI	CTRYAG	1 cut(s)	402
BfoI	RGCGCY	1 cut(s)	354
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	1 cut(s)	852
BlsI	GCNGC	1 cut(s)	853
Bme1390I	CCNGG	3 cut(s)	33, 318, 441
Bme18I	GGWCC	3 cut(s)	26, 206, 821
BmgT120I	GGNCC	3 cut(s)	26, 206, 821
BmiI	GGNNCC	2 cut(s)	117, 621
BmrFI	CCNGG	3 cut(s)	33, 318, 441
BmsI	GCATC	2 cut(s)	118, 409
BmtI	GCTAGC	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	331
BpuMI	CCSGG	1 cut(s)	318
BsaBI	GATNNNNATC	1 cut(s)	618
BsaJI	CCNNGG	4 cut(s)	32, 316, 439, 440
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 215
Bse1I	ACTGG	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	392
Bse3DI	GCAATG	4 cut(s)	64, 131, 458, 766
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	33, 441
BseDI	CCNNGG	4 cut(s)	32, 316, 439, 440
BseGI	GGATG	1 cut(s)	883
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	2 cut(s)	38, 215
BseMI	GCAATG	4 cut(s)	64, 131, 458, 766
BseMII	CTCAG	2 cut(s)	83, 406
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	863
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	198
BsiSI	CCGG	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	38, 215
BsmAI	GTCTC	2 cut(s)	72, 906
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	115, 163, 292, 613, 619
BspACI	CCGC	2 cut(s)	500, 854
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	2 cut(s)	82, 405
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	117, 621
BspMAI	CTGCAG	1 cut(s)	406
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	5 cut(s)	110, 123, 171, 614, 627
BsrDI	GCAATG	4 cut(s)	64, 131, 458, 766
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	4 cut(s)	32, 316, 439, 440
BssMI	GATC	5 cut(s)	115, 163, 292, 613, 619
Bst2UI	CCWGG	2 cut(s)	33, 441
Bst4CI	ACNGT	3 cut(s)	200, 608, 683
BstC8I	GCNNGC	3 cut(s)	552, 778, 790
BstDEI	CTNAG	6 cut(s)	69, 176, 392, 519, 633, 651
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	883
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	353, 794
BstKTI	GATC	5 cut(s)	118, 166, 295, 616, 622
BstMAI	GTCTC	2 cut(s)	72, 906
BstMBI	GATC	5 cut(s)	115, 163, 292, 613, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	2 cut(s)	33, 441
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	31, 316, 439
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	863
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	3 cut(s)	115, 163, 619
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	3 cut(s)	115, 163, 619
Bsu36I	CCTNAGG	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	883
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	552, 778, 790
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	2 cut(s)	353, 794
Cfr13I	GGNCC	3 cut(s)	26, 206, 821
Csp6I	GTAC	2 cut(s)	637, 868
CviAII	CATG	5 cut(s)	64, 232, 367, 481, 871
CviJI	RGCY	5 cut(s)	321, 550, 554, 632, 646
CviKI_1	RGCY	5 cut(s)	321, 550, 554, 632, 646
CviQI	GTAC	2 cut(s)	637, 868
DdeI	CTNAG	6 cut(s)	69, 176, 392, 519, 633, 651
DpnI	GATC	5 cut(s)	117, 165, 294, 615, 621
DpnII	GATC	5 cut(s)	115, 163, 292, 613, 619
EaeI	YGGCCR	1 cut(s)	319
Eco47I	GGWCC	3 cut(s)	26, 206, 821
Eco81I	CCTNAGG	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	31, 439
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	5 cut(s)	67, 235, 370, 484, 874
FatI	CATG	5 cut(s)	63, 231, 366, 480, 870
FauI	CCCGC	1 cut(s)	507
FauNDI	CATATG	2 cut(s)	139, 489
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	852
FokI	GGATG	1 cut(s)	890
Fsp4HI	GCNGC	1 cut(s)	852
FspBI	CTAG	3 cut(s)	242, 551, 737
GlaI	GCGC	2 cut(s)	352, 793
GluI	GCNGC	1 cut(s)	852
GsuI	CTGGAG	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	318
HhaI	GCGC	2 cut(s)	353, 794
Hin1II	CATG	5 cut(s)	67, 235, 370, 484, 874
Hin6I	GCGC	2 cut(s)	351, 792
HinP1I	GCGC	2 cut(s)	351, 792
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	2 cut(s)	586, 733
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	3 cut(s)	29, 154, 399
Hpy188III	TCNNGA	6 cut(s)	242, 367, 611, 617, 713, 909
Hpy8I	GTNNAC	3 cut(s)	29, 154, 399
HpyAV	CCTTC	1 cut(s)	868
HpyCH4III	ACNGT	3 cut(s)	200, 608, 683
HpyCH4V	TGCA	9 cut(s)	57, 131, 231, 404, 432, 458, 815, 851, 859
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	6 cut(s)	69, 176, 392, 519, 633, 651
Hsp92II	CATG	5 cut(s)	67, 235, 370, 484, 874
HspAI	GCGC	2 cut(s)	351, 792
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	5 cut(s)	115, 163, 292, 613, 619
LmnI	GCTCC	1 cut(s)	193
Lsp1109I	GCAGC	1 cut(s)	863
LweI	GCATC	2 cut(s)	118, 409
MaeI	CTAG	3 cut(s)	242, 551, 737
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	5 cut(s)	117, 165, 294, 615, 621
MboI	GATC	5 cut(s)	115, 163, 292, 613, 619
MboII	GAAGA	6 cut(s)	55, 102, 259, 332, 590, 686
MflI	RGATCY	3 cut(s)	115, 163, 619
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	3 cut(s)	109, 691, 886
MmeI	TCCRAC	2 cut(s)	103, 243
MnlI	CCTC	6 cut(s)	154, 209, 259, 291, 401, 633
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	3 cut(s)	386, 530, 741
MslI	CAYNNNNRTG	2 cut(s)	142, 507
MspA1I	CMGCKG	1 cut(s)	854
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	3 cut(s)	33, 318, 441
MvaI	CCWGG	2 cut(s)	33, 441
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	1 cut(s)	318
NdeI	CATATG	2 cut(s)	139, 489
NdeII	GATC	5 cut(s)	115, 163, 292, 613, 619
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	5 cut(s)	67, 235, 370, 484, 874
NlaIV	GGNNCC	2 cut(s)	117, 621
NmeAIII	GCCGAG	1 cut(s)	608
NmuCI	GTSAC	1 cut(s)	434
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	366
PasI	CCCWGGG	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	586, 733
PkrI	GCNGC	1 cut(s)	853
PsiI	TTATAA	2 cut(s)	170, 287
Psp6I	CCWGG	2 cut(s)	31, 439
PspGI	CCWGG	2 cut(s)	31, 439
PspN4I	GGNNCC	2 cut(s)	117, 621
PspPI	GGNCC	3 cut(s)	26, 206, 821
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	3 cut(s)	115, 163, 619
RsaI	GTAC	2 cut(s)	638, 869
RsaNI	GTAC	2 cut(s)	637, 868
RseI	CAYNNNNRTG	2 cut(s)	142, 507
SaqAI	TTAA	3 cut(s)	386, 530, 741
SatI	GCNGC	1 cut(s)	852
Sau3AI	GATC	5 cut(s)	115, 163, 292, 613, 619
Sau96I	GGNCC	3 cut(s)	26, 206, 821
ScrFI	CCNGG	3 cut(s)	33, 318, 441
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	2 cut(s)	118, 409
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	3 cut(s)	26, 206, 821
SmiMI	CAYNNNNRTG	2 cut(s)	142, 507
Sse9I	AATT	3 cut(s)	109, 691, 886
SsiI	CCGC	2 cut(s)	500, 854
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	3 cut(s)	242, 551, 737
StyD4I	CCNGG	3 cut(s)	31, 316, 439
TaaI	ACNGT	3 cut(s)	200, 608, 683
TaqI	TCGA	1 cut(s)	327
TasI	AATT	3 cut(s)	109, 691, 886
TatI	WGTACW	2 cut(s)	636, 867
TfiI	GAWTC	2 cut(s)	586, 733
Tru1I	TTAA	3 cut(s)	386, 530, 741
Tru9I	TTAA	3 cut(s)	386, 530, 741
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	1 cut(s)	851
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	6 cut(s)	156, 383, 398, 476, 887, 915
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	3 cut(s)	26, 206, 821
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	1 cut(s)	886
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	3 cut(s)	242, 551, 737
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.