Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Reverse (-)

69811488 .. 69814918

Gene Structure 3431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG497000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTGTTTGGGCAAGTTGTGATCGGTCCACCTGGCTCAGGGAAGACCACTTACTGCAACGGCATGTCGCAATTCCTCCAACTCATTGGAAGGAAAGTTGCGGTTATCAATTTGGACCCGGCTAACGATTCATTACCGTATGAATGTGCTGTGAACATAGCTGATCTTGTAAAACTAAGTGATGTCATGGCGGAACATTCTCTCGGTCCAAATGGAGGTCTGGTGTATTGCATGGATTATCTAGAGAAAAATATTGACTGGTTGGAGGCTAGGTTGAAACCTCTTCTTAAAGATCACTATCTTCTCTTTGATTTTCCCGGCCAAGTGGAACTATTCTTTCTTTATTCCAACGCCAAGAATATTATCATGAAACTCATAAAGAAGTTAAACCTCAGGTTGGCTGCAGTGCATTTAGTTGATGCCCATCTTTGCAGTGATCCTGCGAAGTATGTTAGTGCATTGCTTCTCTCTTTATCAACCATGATACATATGGAGCTCCCACACATAAATGTCTTGTCTAAGATTGATTTGATACAGAACTATGGAAAGCTAGCTTTCAACCTTGATTTCTATACTGATGTGGATGATTTATCTTATCTTCAGAACAGTCTTGATCAGGATCCTCGCTTAGCTAAATTCAGGTCTGATGAATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

218

Amino Acids

24.54

Weight (kDa)

5.44

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	7 - 206	9.5e-70	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	101, 191
AclWI	GGATC	3 cut(s)	431, 614, 627
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	584
AfiI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
AgsI	TTSAA	2 cut(s)	277, 559
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	5 cut(s)	161, 496, 550, 554, 632
AluI	AGCT	5 cut(s)	161, 496, 550, 554, 632
Alw21I	GWGCWC	1 cut(s)	498
AlwI	GGATC	3 cut(s)	431, 614, 627
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	1 cut(s)	635
AspS9I	GGNCC	3 cut(s)	26, 115, 206
AsuC2I	CCSGG	2 cut(s)	119, 318
AsuNHI	GCTAGC	1 cut(s)	550
AvaII	GGWCC	3 cut(s)	26, 115, 206
AxyI	CCTNAGG	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	619
BanII	GRGCYC	1 cut(s)	498
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	498
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	2 cut(s)	119, 318
BfaI	CTAG	3 cut(s)	242, 270, 551
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	1 cut(s)	402
BlpI	GCTNAGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	3 cut(s)	33, 119, 318
Bme18I	GGWCC	3 cut(s)	26, 115, 206
BmgT120I	GGNCC	3 cut(s)	26, 115, 206
BmiI	GGNNCC	2 cut(s)	117, 621
BmrFI	CCNGG	3 cut(s)	33, 119, 318
BmsI	GCATC	1 cut(s)	409
BmtI	GCTAGC	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	628
BpuMI	CCSGG	2 cut(s)	119, 318
BsaBI	GATNNNNATC	3 cut(s)	297, 423, 618
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 257, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 215, 397
Bse1I	ACTGG	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	458
Bse8I	GATNNNNATC	3 cut(s)	297, 423, 618
BseBI	CCWGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	589
BseJI	GATNNNNATC	3 cut(s)	297, 423, 618
BseLI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	2 cut(s)	51, 406
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	119, 318
BslI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
Bsp1720I	GCTNAGC	1 cut(s)	628
BspACI	CCGC	2 cut(s)	101, 191
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	2 cut(s)	50, 405
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	117, 621
BspMAI	CTGCAG	1 cut(s)	406
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	3 cut(s)	431, 614, 627
BsrDI	GCAATG	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	263
BssMI	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	138, 608
Bst6I	CTCTTC	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	5 cut(s)	37, 176, 392, 519, 628
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	589
BstKTI	GATC	6 cut(s)	24, 166, 295, 439, 616, 622
BstMBI	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	31, 117, 316
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	619
BstXI	CCANNNNNNTGG	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	619
Bsu36I	CCTNAGG	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	589
BtsI	GCAGTG	2 cut(s)	411, 439
BtsIMutI	CAGTG	2 cut(s)	411, 439
Cac8I	GCNNGC	1 cut(s)	552
CciI	TCATGA	1 cut(s)	366
Cfr13I	GGNCC	3 cut(s)	26, 115, 206
CviAII	CATG	5 cut(s)	64, 187, 232, 367, 481
DdeI	CTNAG	5 cut(s)	37, 176, 392, 519, 628
DpnI	GATC	6 cut(s)	23, 165, 294, 438, 615, 621
DpnII	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	206
Ecl136II	GAGCTC	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	498
Eco47I	GGWCC	3 cut(s)	26, 115, 206
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	584
Eco81I	CCTNAGG	1 cut(s)	392
EcoICRI	GAGCTC	1 cut(s)	496
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	498
FaeI	CATG	5 cut(s)	67, 190, 235, 370, 484
FatI	CATG	5 cut(s)	63, 186, 231, 366, 480
FauNDI	CATATG	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	402
FokI	GGATG	1 cut(s)	596
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	3 cut(s)	242, 270, 551
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	2 cut(s)	119, 318
Hin1II	CATG	5 cut(s)	67, 190, 235, 370, 484
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	2 cut(s)	119, 318
Hpy166II	GTNNAC	2 cut(s)	29, 154
Hpy188I	TCNGA	2 cut(s)	603, 646
Hpy188III	TCNNGA	4 cut(s)	242, 367, 611, 617
Hpy8I	GTNNAC	2 cut(s)	29, 154
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	2 cut(s)	138, 608
HpyCH4V	TGCA	6 cut(s)	57, 231, 404, 409, 432, 458
HpyF3I	CTNAG	5 cut(s)	37, 176, 392, 519, 628
Hsp92II	CATG	5 cut(s)	67, 190, 235, 370, 484
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
LmnI	GCTCC	2 cut(s)	493, 501
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	3 cut(s)	242, 270, 551
MalI	GATC	6 cut(s)	23, 165, 294, 438, 615, 621
MboI	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
MboII	GAAGA	4 cut(s)	55, 275, 293, 590
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	3 cut(s)	71, 109, 635
MmeI	TCCRAC	3 cut(s)	103, 243, 372
MnlI	CCTC	6 cut(s)	86, 209, 259, 291, 401, 633
MseI	TTAA	2 cut(s)	288, 386
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	2 cut(s)	119, 318
MspR9I	CCNGG	3 cut(s)	33, 119, 318
MvaI	CCWGG	1 cut(s)	33
NciI	CCSGG	2 cut(s)	119, 318
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	5 cut(s)	67, 190, 235, 370, 484
NlaIV	GGNNCC	2 cut(s)	117, 621
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	403
Psp124BI	GAGCTC	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	117, 621
PspPI	GGNCC	3 cut(s)	26, 115, 206
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	619
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	288, 386
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
Sau96I	GGNCC	3 cut(s)	26, 115, 206
ScrFI	CCNGG	3 cut(s)	33, 119, 318
SduI	GDGCHC	1 cut(s)	498
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	3 cut(s)	26, 115, 206
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	3 cut(s)	71, 109, 635
SsiI	CCGC	2 cut(s)	101, 191
SspI	AATATT	3 cut(s)	253, 361, 653
SspMI	CTAG	3 cut(s)	242, 270, 551
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	3 cut(s)	31, 117, 316
TaaI	ACNGT	2 cut(s)	138, 608
TaqII	GACCGA	2 cut(s)	14, 194
TasI	AATT	3 cut(s)	71, 109, 635
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	288, 386
Tru9I	TTAA	2 cut(s)	288, 386
TscAI	CASTG	2 cut(s)	411, 439
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	3 cut(s)	120, 156, 383
TspRI	CASTG	2 cut(s)	411, 439
VpaK11BI	GGWCC	3 cut(s)	26, 115, 206
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	1 cut(s)	635
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	3 cut(s)	242, 270, 551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.