Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Forward (+)

6750331 .. 6752861

Gene Structure 2531 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1081600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTTTTTGGGCAAGTGGTGATCGGCCCGCCTGGGTCAGGGAAGACGACTTACTGCAATGGCATGTCTCAGTTCCTCCAGCTCATCGGAAGGAAAGTTGCTGTGGTAAATTTGGATCCTGCCAACGATGCATTGCCGTATGAATGTGCTGTGAACATGGAGGAGCTTATAAAACTGAGTGATGTGATGGTGGAGCACTCTCTTGGTCCCAATGGAGGTCTTGTATATTGCATGGATTATCTAGAGAAGAATATTGACTGGTTGGAGGCCAAGTTGAAACCTCTTATAAAAGATCATTATATTCTATTTGATCTCCCTGGCCAAGTGGAACTATTCTTTCTTCACTCCAACGCTAAGAACGTTATCATGAAACTCGTGAAGAAGTTAAACCTCAGGTTGACTGCAGTACATTTGGTTGATGCCCATCTTTGCAGCGACCCTGGAAAGTATGTTAGTGCATTGATTCTCTCTTTATCAACCATGCTTCATATGGAACTCCCGCACATAAATGTCTTGTCTAAGATTGATCTAATAGAGAGTTACGGAAAGCTAGCTTTCAACCTCGATTTCTTCACAGATGTAGAGGATTTATCTTATCTTCAGTACAAGCTGGATCAGGATCCTCGCTCGGCTAAGTACAGCTTACTAAGGAGCTTTGTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

222

Amino Acids

24.88

Weight (kDa)

5.96

Isoelectric Point (pI)

32.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	7 - 215	2.1e-70	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	170, 287
AciI	CCGC	2 cut(s)	29, 500
AclI	AACGTT	1 cut(s)	360
AclWI	GGATC	5 cut(s)	110, 123, 614, 621, 627
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	1 cut(s)	109
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	3 cut(s)	408, 605, 638
AfiI	CCNNNNNNNGG	2 cut(s)	38, 215
AgsI	TTSAA	2 cut(s)	277, 559
AjnI	CCWGG	3 cut(s)	31, 316, 439
AluBI	AGCT	7 cut(s)	82, 166, 550, 554, 610, 642, 654
AluI	AGCT	7 cut(s)	82, 166, 550, 554, 610, 642, 654
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	5 cut(s)	110, 123, 614, 621, 627
AoxI	GGCC	3 cut(s)	25, 267, 319
ApeKI	GCWGC	1 cut(s)	432
ApoI	RAATTY	1 cut(s)	109
AspS9I	GGNCC	2 cut(s)	26, 206
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	550
AvaII	GGWCC	1 cut(s)	206
AxyI	CCTNAGG	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	321
BamHI	GGATCC	2 cut(s)	115, 619
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BauI	CACGAG	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	2 cut(s)	181, 432
BceAI	ACGGC	1 cut(s)	121
BciT130I	CCWGG	3 cut(s)	33, 318, 441
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	2 cut(s)	242, 551
BfmI	CTRYAG	1 cut(s)	402
BisI	GCNGC	1 cut(s)	433
BlsI	GCNGC	1 cut(s)	434
Bme1390I	CCNGG	3 cut(s)	33, 318, 441
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	2 cut(s)	26, 206
BmiI	GGNNCC	3 cut(s)	117, 208, 621
BmrFI	CCNGG	3 cut(s)	33, 318, 441
BmsI	GCATC	2 cut(s)	118, 409
BmtI	GCTAGC	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	62
BsaBI	GATNNNNATC	2 cut(s)	423, 618
BsaJI	CCNNGG	3 cut(s)	32, 316, 439
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 215
Bse1I	ACTGG	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	392
Bse3DI	GCAATG	2 cut(s)	64, 131
Bse8I	GATNNNNATC	2 cut(s)	423, 618
BseBI	CCWGG	3 cut(s)	33, 318, 441
BseDI	CCNNGG	3 cut(s)	32, 316, 439
BseJI	GATNNNNATC	2 cut(s)	423, 618
BseLI	CCNNNNNNNGG	2 cut(s)	38, 215
BseMI	GCAATG	2 cut(s)	64, 131
BseMII	CTCAG	3 cut(s)	83, 167, 406
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	444
BshFI	GGCC	3 cut(s)	27, 269, 321
BsiHKAI	GWGCWC	1 cut(s)	198
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	2 cut(s)	38, 215
BsmAI	GTCTC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	27, 269, 321
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	7 cut(s)	21, 115, 292, 310, 526, 613, 619
BspACI	CCGC	2 cut(s)	29, 500
BspANI	GGCC	3 cut(s)	27, 269, 321
BspCNI	CTCAG	3 cut(s)	82, 168, 405
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	3 cut(s)	117, 208, 621
BspMAI	CTGCAG	1 cut(s)	406
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	5 cut(s)	110, 123, 614, 621, 627
BsrDI	GCAATG	2 cut(s)	64, 131
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	3 cut(s)	32, 316, 439
BssMI	GATC	7 cut(s)	21, 115, 292, 310, 526, 613, 619
BssSI	CACGAG	1 cut(s)	374
Bst2BI	CACGAG	1 cut(s)	374
Bst2UI	CCWGG	3 cut(s)	33, 318, 441
BstC8I	GCNNGC	2 cut(s)	29, 552
BstDEI	CTNAG	7 cut(s)	69, 176, 354, 392, 519, 633, 647
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstKTI	GATC	7 cut(s)	24, 118, 295, 313, 529, 616, 622
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	7 cut(s)	21, 115, 292, 310, 526, 613, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	3 cut(s)	33, 318, 441
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	3 cut(s)	31, 316, 439
BstSFI	CTRYAG	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	444
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	2 cut(s)	115, 619
BstYI	RGATCY	2 cut(s)	115, 619
Bsu36I	CCTNAGG	1 cut(s)	392
BsuRI	GGCC	3 cut(s)	27, 269, 321
Cac8I	GCNNGC	2 cut(s)	29, 552
CciI	TCATGA	1 cut(s)	366
Cfr13I	GGNCC	2 cut(s)	26, 206
Csp6I	GTAC	3 cut(s)	407, 604, 637
CviAII	CATG	5 cut(s)	64, 157, 232, 367, 481
CviQI	GTAC	3 cut(s)	407, 604, 637
DdeI	CTNAG	7 cut(s)	69, 176, 354, 392, 519, 633, 647
DpnI	GATC	7 cut(s)	23, 117, 294, 312, 528, 615, 621
DpnII	GATC	7 cut(s)	21, 115, 292, 310, 526, 613, 619
EaeI	YGGCCR	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	584
Eco81I	CCTNAGG	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRII	CCWGG	3 cut(s)	31, 316, 439
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	5 cut(s)	67, 160, 235, 370, 484
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	5 cut(s)	63, 156, 231, 366, 480
FauI	CCCGC	2 cut(s)	36, 507
FauNDI	CATATG	1 cut(s)	489
Fnu4HI	GCNGC	1 cut(s)	433
Fsp4HI	GCNGC	1 cut(s)	433
FspBI	CTAG	2 cut(s)	242, 551
GluI	GCNGC	1 cut(s)	433
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	3 cut(s)	27, 269, 321
Hin1II	CATG	5 cut(s)	67, 160, 235, 370, 484
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HinfI	GANTC	1 cut(s)	463
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	154, 399
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	4 cut(s)	242, 367, 376, 617
Hpy8I	GTNNAC	2 cut(s)	154, 399
HpyAV	CCTTC	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	6 cut(s)	57, 131, 231, 404, 432, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	7 cut(s)	69, 176, 354, 392, 519, 633, 647
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	5 cut(s)	67, 160, 235, 370, 484
Kzo9I	GATC	7 cut(s)	21, 115, 292, 310, 526, 613, 619
LmnI	GCTCC	3 cut(s)	163, 193, 651
Lsp1109I	GCAGC	1 cut(s)	444
LweI	GCATC	2 cut(s)	118, 409
MaeI	CTAG	2 cut(s)	242, 551
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	7 cut(s)	23, 117, 294, 312, 528, 615, 621
MboI	GATC	7 cut(s)	21, 115, 292, 310, 526, 613, 619
MboII	GAAGA	6 cut(s)	55, 259, 332, 391, 562, 590
MflI	RGATCY	2 cut(s)	115, 619
MhlI	GDGCHC	1 cut(s)	198
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	1 cut(s)	109
MluNI	TGGCCA	1 cut(s)	321
MmeI	TCCRAC	2 cut(s)	243, 372
MnlI	CCTC	9 cut(s)	86, 154, 209, 259, 291, 401, 572, 577, 633
Mox20I	TGGCCA	1 cut(s)	321
Mph1103I	ATGCAT	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	1 cut(s)	386
MslI	CAYNNNNRTG	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	321
MspR9I	CCNGG	3 cut(s)	33, 318, 441
MvaI	CCWGG	3 cut(s)	33, 318, 441
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	7 cut(s)	21, 115, 292, 310, 526, 613, 619
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	5 cut(s)	67, 160, 235, 370, 484
NlaIV	GGNNCC	3 cut(s)	117, 208, 621
NmeAIII	GCCGAG	1 cut(s)	608
NsiI	ATGCAT	1 cut(s)	133
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	434
PsiI	TTATAA	2 cut(s)	170, 287
Psp1406I	AACGTT	1 cut(s)	360
Psp6I	CCWGG	3 cut(s)	31, 316, 439
PspGI	CCWGG	3 cut(s)	31, 316, 439
PspN4I	GGNNCC	3 cut(s)	117, 208, 621
PspPI	GGNCC	2 cut(s)	26, 206
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	115, 619
RsaI	GTAC	3 cut(s)	408, 605, 638
RsaNI	GTAC	3 cut(s)	407, 604, 637
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	1 cut(s)	433
Sau3AI	GATC	7 cut(s)	21, 115, 292, 310, 526, 613, 619
Sau96I	GGNCC	2 cut(s)	26, 206
ScrFI	CCNGG	3 cut(s)	33, 318, 441
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	2 cut(s)	118, 409
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	1 cut(s)	206
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	2 cut(s)	29, 500
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	2 cut(s)	242, 551
StyD4I	CCNGG	3 cut(s)	31, 316, 439
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	1 cut(s)	564
TasI	AATT	1 cut(s)	109
TatI	WGTACW	3 cut(s)	406, 603, 636
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TseI	GCWGC	1 cut(s)	432
TspDTI	ATGAA	3 cut(s)	156, 383, 476
TspGWI	ACGGA	1 cut(s)	558
VpaK11BI	GGWCC	1 cut(s)	206
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	1 cut(s)	109
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	2 cut(s)	242, 551
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.