Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Forward (+)

4729009 .. 4732307

Gene Structure 3299 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1068400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGTTTTTGGGCAAGTGGTGATCGGCCCGCCCGGGTCAGGGAAGACCACTTACTGCAACGGTATGTCTCAGTTCCTCCAGCTCATCGGAAGGAAAGTTGCAGTTGTGAATTTGGATCCTGCCAACGATGCATTGCCGTATGAATGTGCTGTGAACATTGAGGATCTTGTAAAACTCAGTGATGTGATGGTGGAGCACTCTCTTGGTCCCAATGGAGGTCTTGTGTATTGCATGGATTATCTAGAGAAGAATTTTGACTGGTTGGAGGCGAAGTTGAAACCTCTTATGAAAGATCATTATATTCTCTTTGATCTCCCCGGCCAAGTGGAACTATTCTTTCTTCACTCGAACGCCAAGAATGTCATCATGAAGCTTGTAAAGAAGTTAAACCTCAGGTTGACCGCTGTGCATTTGGTTGATGCCCATCTTTGCAGTGATCCTGGAAAGTATGTTAGTGCATTGATTCTCTCTTTATCAACCATGCTTCATATGGAACTCCCTCACATAAATGTCTTGTCTAAGATTGATCTAATAGAGAGTTATGGAAAGCTAGCTTTCAACCTTGATTTCTTCACAGATGTAGAGGATTTATCTTATCTTCAGTACAAGATTGATCAGGATCCTCGTTCGGCTAAGTACAGAAAGCTTACTAAGGAGCTTTGTGAAGTAGTTGAAGATTACAGTCTTGTCAATTTTGCAACCTTAGATATCCAGGATAAAGAGAGTGTAGGGAATCTAGTTAAACTGATAGACAAGAGCAATGGGTACATTTTTGCTGGTATAGACGCGAGTGCCGTAGAATTCAGCAAGATTGCAGTCGGTCCTGTTGATTGGGATTATTACAGATATCCTTTTTATTTTGATTCTACAATAAAAAGTTTGCGGCTCACAGTTGCAGCAGTGCAAGAGAAGTACATGAAGGATGACGAAACTTTTGACGACGACAATGAACAGCTGAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

322

Amino Acids

36.39

Weight (kDa)

4.9

Isoelectric Point (pI)

29.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	7 - 255	5.3e-80	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	788
AciI	CCGC	3 cut(s)	29, 402, 883
AclWI	GGATC	6 cut(s)	110, 123, 171, 431, 614, 627
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	3 cut(s)	109, 250, 800
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	4 cut(s)	605, 638, 767, 914
AfiI	CCNNNNNNNGG	3 cut(s)	38, 39, 215
AgsI	TTSAA	3 cut(s)	277, 559, 674
AjnI	CCWGG	2 cut(s)	439, 711
AluBI	AGCT	7 cut(s)	82, 373, 550, 554, 646, 658, 955
AluI	AGCT	7 cut(s)	82, 373, 550, 554, 646, 658, 955
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	2 cut(s)	72, 954
AlwI	GGATC	6 cut(s)	110, 123, 171, 431, 614, 627
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	2 cut(s)	25, 319
ApeKI	GCWGC	1 cut(s)	896
ApoI	RAATTY	3 cut(s)	109, 250, 800
ArsI	GACNNNNNNTTYG	2 cut(s)	917, 949
AspS9I	GGNCC	3 cut(s)	26, 206, 821
AsuC2I	CCSGG	3 cut(s)	33, 34, 318
AsuHPI	GGTGA	1 cut(s)	31
AsuNHI	GCTAGC	1 cut(s)	550
AvaI	CYCGRG	1 cut(s)	32
AvaII	GGWCC	2 cut(s)	206, 821
AxyI	CCTNAGG	1 cut(s)	392
BamHI	GGATCC	2 cut(s)	115, 619
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbsI	GAAGAC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	1 cut(s)	908
BccI	CCATC	2 cut(s)	181, 432
BceAI	ACGGC	2 cut(s)	121, 779
BciT130I	CCWGG	2 cut(s)	441, 713
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	3 cut(s)	33, 34, 318
BcoDI	GTCTC	2 cut(s)	72, 954
BfaI	CTAG	3 cut(s)	242, 551, 737
BisI	GCNGC	2 cut(s)	884, 897
BlsI	GCNGC	2 cut(s)	885, 898
Bme1390I	CCNGG	5 cut(s)	33, 34, 318, 441, 713
Bme18I	GGWCC	2 cut(s)	206, 821
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	3 cut(s)	26, 206, 821
BmiI	GGNNCC	3 cut(s)	117, 208, 621
BmrFI	CCNGG	5 cut(s)	33, 34, 318, 441, 713
BmsI	GCATC	2 cut(s)	118, 409
BmtI	GCTAGC	1 cut(s)	554
BpiI	GAAGAC	1 cut(s)	50
BpmI	CTGGAG	1 cut(s)	62
BpuMI	CCSGG	3 cut(s)	33, 34, 318
BsaBI	GATNNNNATC	2 cut(s)	423, 618
BsaJI	CCNNGG	2 cut(s)	32, 316
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 257, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 39, 215
Bse1I	ACTGG	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	392
Bse3DI	GCAATG	2 cut(s)	131, 766
Bse8I	GATNNNNATC	2 cut(s)	423, 618
BseBI	CCWGG	2 cut(s)	441, 713
BseDI	CCNNGG	2 cut(s)	32, 316
BseGI	GGATG	1 cut(s)	928
BseJI	GATNNNNATC	2 cut(s)	423, 618
BseLI	CCNNNNNNNGG	3 cut(s)	38, 39, 215
BseMI	GCAATG	2 cut(s)	131, 766
BseMII	CTCAG	4 cut(s)	83, 190, 406, 947
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	908
Bsh1236I	CGCG	1 cut(s)	788
BshFI	GGCC	2 cut(s)	27, 321
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	33, 318
BslFI	GGGAC	1 cut(s)	192
BslI	CCNNNNNNNGG	3 cut(s)	38, 39, 215
BsmAI	GTCTC	2 cut(s)	72, 954
BsmFI	GGGAC	1 cut(s)	192
BsnI	GGCC	2 cut(s)	27, 321
BsoBI	CYCGRG	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	9 cut(s)	21, 115, 163, 292, 310, 436, 526, 613, 619
BspACI	CCGC	3 cut(s)	29, 402, 883
BspANI	GGCC	2 cut(s)	27, 321
BspCNI	CTCAG	4 cut(s)	82, 189, 405, 948
BspFNI	CGCG	1 cut(s)	788
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	3 cut(s)	117, 208, 621
BspOI	GCTAGC	1 cut(s)	554
BspPI	GGATC	6 cut(s)	110, 123, 171, 431, 614, 627
BsrDI	GCAATG	2 cut(s)	131, 766
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	32, 316
BssMI	GATC	9 cut(s)	21, 115, 163, 292, 310, 436, 526, 613, 619
Bst2UI	CCWGG	2 cut(s)	441, 713
Bst4CI	ACNGT	3 cut(s)	62, 683, 892
BstC8I	GCNNGC	2 cut(s)	29, 552
BstDEI	CTNAG	8 cut(s)	69, 176, 392, 519, 633, 651, 703, 956
BstF5I	GGATG	1 cut(s)	928
BstFNI	CGCG	1 cut(s)	788
BstKTI	GATC	9 cut(s)	24, 118, 166, 295, 313, 439, 529, 616, 622
BstMAI	GTCTC	2 cut(s)	72, 954
BstMBI	GATC	9 cut(s)	21, 115, 163, 292, 310, 436, 526, 613, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	2 cut(s)	441, 713
BstSCI	CCNGG	5 cut(s)	31, 32, 316, 439, 711
BstUI	CGCG	1 cut(s)	788
BstV1I	GCAGC	1 cut(s)	908
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	3 cut(s)	115, 163, 619
BstYI	RGATCY	3 cut(s)	115, 163, 619
Bsu36I	CCTNAGG	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	27, 321
BtsCI	GGATG	1 cut(s)	928
BtsI	GCAGTG	2 cut(s)	439, 906
BtsIMutI	CAGTG	3 cut(s)	184, 439, 906
Cac8I	GCNNGC	2 cut(s)	29, 552
CciI	TCATGA	1 cut(s)	366
Cfr13I	GGNCC	3 cut(s)	26, 206, 821
Cfr9I	CCCGGG	1 cut(s)	32
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	4 cut(s)	604, 637, 766, 913
CviAII	CATG	4 cut(s)	232, 367, 481, 916
CviQI	GTAC	4 cut(s)	604, 637, 766, 913
DdeI	CTNAG	8 cut(s)	69, 176, 392, 519, 633, 651, 703, 956
DpnI	GATC	9 cut(s)	23, 117, 165, 294, 312, 438, 528, 615, 621
DpnII	GATC	9 cut(s)	21, 115, 163, 292, 310, 436, 526, 613, 619
EaeI	YGGCCR	1 cut(s)	319
Eco32I	GATATC	2 cut(s)	709, 848
Eco47I	GGWCC	2 cut(s)	206, 821
Eco57I	CTGAAG	1 cut(s)	584
Eco81I	CCTNAGG	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	2 cut(s)	439, 711
EcoRV	GATATC	2 cut(s)	709, 848
EcoT22I	ATGCAT	1 cut(s)	133
FaeI	CATG	4 cut(s)	235, 370, 484, 919
FaqI	GGGAC	1 cut(s)	192
FatI	CATG	4 cut(s)	231, 366, 480, 915
FauI	CCCGC	1 cut(s)	36
FauNDI	CATATG	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	2 cut(s)	884, 897
FokI	GGATG	1 cut(s)	935
Fsp4HI	GCNGC	2 cut(s)	884, 897
FspBI	CTAG	3 cut(s)	242, 551, 737
GluI	GCNGC	2 cut(s)	884, 897
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	2 cut(s)	27, 321
HapII	CCGG	2 cut(s)	33, 318
HgaI	GACGC	1 cut(s)	794
Hin1II	CATG	4 cut(s)	235, 370, 484, 919
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HindIII	AAGCTT	2 cut(s)	371, 644
HinfI	GANTC	3 cut(s)	463, 733, 863
HpaII	CCGG	2 cut(s)	33, 318
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	154, 399
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	3 cut(s)	242, 367, 617
Hpy8I	GTNNAC	2 cut(s)	154, 399
Hpy99I	CGWCG	1 cut(s)	944
HpyAV	CCTTC	2 cut(s)	84, 913
HpyCH4III	ACNGT	3 cut(s)	62, 683, 892
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	8 cut(s)	69, 176, 392, 519, 633, 651, 703, 956
Hsp92II	CATG	4 cut(s)	235, 370, 484, 919
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	9 cut(s)	21, 115, 163, 292, 310, 436, 526, 613, 619
LmnI	GCTCC	2 cut(s)	193, 655
Lsp1109I	GCAGC	1 cut(s)	908
LweI	GCATC	2 cut(s)	118, 409
MaeI	CTAG	3 cut(s)	242, 551, 737
MalI	GATC	9 cut(s)	23, 117, 165, 294, 312, 438, 528, 615, 621
MboI	GATC	9 cut(s)	21, 115, 163, 292, 310, 436, 526, 613, 619
MboII	GAAGA	6 cut(s)	55, 259, 332, 562, 590, 686
MflI	RGATCY	3 cut(s)	115, 163, 619
MhlI	GDGCHC	1 cut(s)	198
MluCI	AATT	4 cut(s)	109, 250, 691, 800
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	9 cut(s)	86, 154, 209, 259, 291, 401, 510, 577, 633
Mph1103I	ATGCAT	1 cut(s)	133
MseI	TTAA	2 cut(s)	386, 741
MslI	CAYNNNNRTG	1 cut(s)	507
MspA1I	CMGCKG	2 cut(s)	404, 955
MspI	CCGG	2 cut(s)	33, 318
MspR9I	CCNGG	5 cut(s)	33, 34, 318, 441, 713
MvaI	CCWGG	2 cut(s)	441, 713
MvnI	CGCG	1 cut(s)	788
MwoI	GCNNNNNNNGC	1 cut(s)	128
NciI	CCSGG	3 cut(s)	33, 34, 318
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	9 cut(s)	21, 115, 163, 292, 310, 436, 526, 613, 619
NheI	GCTAGC	1 cut(s)	550
NlaIII	CATG	4 cut(s)	235, 370, 484, 919
NlaIV	GGNNCC	3 cut(s)	117, 208, 621
NsiI	ATGCAT	1 cut(s)	133
PagI	TCATGA	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	792
PfeI	GAWTC	3 cut(s)	463, 733, 863
PfoI	TCCNGGA	2 cut(s)	439, 711
PkrI	GCNGC	2 cut(s)	885, 898
Psp6I	CCWGG	2 cut(s)	439, 711
PspGI	CCWGG	2 cut(s)	439, 711
PspN4I	GGNNCC	3 cut(s)	117, 208, 621
PspPI	GGNCC	3 cut(s)	26, 206, 821
PsuI	RGATCY	3 cut(s)	115, 163, 619
PvuII	CAGCTG	1 cut(s)	955
RsaI	GTAC	4 cut(s)	605, 638, 767, 914
RsaNI	GTAC	4 cut(s)	604, 637, 766, 913
RseI	CAYNNNNRTG	1 cut(s)	507
SaqAI	TTAA	2 cut(s)	386, 741
SatI	GCNGC	2 cut(s)	884, 897
Sau3AI	GATC	9 cut(s)	21, 115, 163, 292, 310, 436, 526, 613, 619
Sau96I	GGNCC	3 cut(s)	26, 206, 821
ScrFI	CCNGG	5 cut(s)	33, 34, 318, 441, 713
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	2 cut(s)	118, 409
SinI	GGWCC	2 cut(s)	206, 821
SmaI	CCCGGG	1 cut(s)	34
SmiMI	CAYNNNNRTG	1 cut(s)	507
Sse9I	AATT	4 cut(s)	109, 250, 691, 800
SsiI	CCGC	3 cut(s)	29, 402, 883
SspMI	CTAG	3 cut(s)	242, 551, 737
StyD4I	CCNGG	5 cut(s)	31, 32, 316, 439, 711
TaaI	ACNGT	3 cut(s)	62, 683, 892
TaqI	TCGA	1 cut(s)	347
TaqII	GACCGA	1 cut(s)	809
TasI	AATT	4 cut(s)	109, 250, 691, 800
TatI	WGTACW	3 cut(s)	603, 636, 912
TauI	GCSGC	1 cut(s)	886
TfiI	GAWTC	3 cut(s)	463, 733, 863
Tru1I	TTAA	2 cut(s)	386, 741
Tru9I	TTAA	2 cut(s)	386, 741
TscAI	CASTG	3 cut(s)	184, 439, 906
TseI	GCWGC	1 cut(s)	896
TspDTI	ATGAA	6 cut(s)	156, 302, 383, 476, 932, 963
TspMI	CCCGGG	1 cut(s)	32
TspRI	CASTG	3 cut(s)	184, 439, 906
VpaK11BI	GGWCC	2 cut(s)	206, 821
XapI	RAATTY	3 cut(s)	109, 250, 800
XbaI	TCTAGA	1 cut(s)	241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmaI	CCCGGG	1 cut(s)	32
XspI	CTAG	3 cut(s)	242, 551, 737
Zsp2I	ATGCAT	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.