Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007632.1

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Reverse (-)

35177 .. 37994

Gene Structure 2818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007632.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atggtgtttgggcaagttgtgatcggtccacctggctcagggaagaccacttactgcaacggcatgtcgcaattcctcgaactcattggaaggaaagttgcggttatcaatttggacccggctaacgattcattaccgtatgaatgtgctgtgaatatagctgatcttgttaaactaagtgatgtcatggcggaacattctcttggtccaaatggaggtctcgtatattgtatggattatctagagaaaaatattgactggttggaggctaggttgaaacctcttcttaaagatcactatcttctctttgattttcccggccaagtggaactattctttctttattccaacgccaagaatattatcatgaaactcataaagaagttaaacctcaggttggctgcagtgcatttagttgacgcccatctttgcagtgatcctgcgaagtatgttagtgcattgcttctctctttatcaaccatgatacatatggagctcccacacataaatgtcttgtctaagattgatttgatacagaactatggaaagctagcgttcaaccttgatttctatactgatgtggaggatttatcttatcttcagaacagtcttgatcaggatcctcgcttagctaaattcagaaagcttaccaaggagctctgtggtgtcatagaagactacagtcttgtcagctttacaaccttagatattcaggataaagagagcgtggggaaactagttaagctgatagacaagaccaatggatatatttttgctagcattgaagcaagtgcagtagaattcagcaaaattgcagttggtcctgttgattgggattaccacagatatccttttatttcttattctagaatacttttgctcttattccttcaatttgtcgctgtactttcattttgtcgctgtacttataatcttcatgtggtatgggcttcaaaccctctcgcttgcaagtttgcaatctttgtctcggaagaaattgatactggaatctcattgactgaagtccggagaactctcagcagtttcccccctccactatcatgctcattcccgtaccatttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

361

Amino Acids

40.67

Weight (kDa)

5.73

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	930
AccIII	TCCGGA	1 cut(s)	1026
AciI	CCGC	2 cut(s)	101, 191
AclWI	GGATC	3 cut(s)	431, 614, 627
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	635, 800
AcuI	CTGAAG	2 cut(s)	584, 1041
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	3 cut(s)	906, 925, 1076
AfiI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
AgsI	TTSAA	5 cut(s)	277, 559, 785, 893, 954
AhlI	ACTAGT	1 cut(s)	736
AjnI	CCWGG	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	8 cut(s)	161, 496, 550, 632, 646, 658, 693, 745
AluI	AGCT	8 cut(s)	161, 496, 550, 632, 646, 658, 693, 745
Alw21I	GWGCWC	2 cut(s)	498, 660
Alw26I	GTCTC	2 cut(s)	224, 991
AlwI	GGATC	3 cut(s)	431, 614, 627
Aor13HI	TCCGGA	1 cut(s)	1026
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	2 cut(s)	635, 800
AspS9I	GGNCC	4 cut(s)	26, 115, 206, 821
AsuC2I	CCSGG	2 cut(s)	119, 318
AsuNHI	GCTAGC	2 cut(s)	550, 776
AvaII	GGWCC	4 cut(s)	26, 115, 206, 821
AxyI	CCTNAGG	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	498, 660
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbsI	GAAGAC	2 cut(s)	50, 681
Bbv12I	GWGCWC	2 cut(s)	498, 660
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	2 cut(s)	119, 318
BcoDI	GTCTC	2 cut(s)	224, 991
BcuI	ACTAGT	1 cut(s)	736
BfaI	CTAG	6 cut(s)	242, 270, 551, 737, 777, 867
BfmI	CTRYAG	2 cut(s)	402, 679
BisI	GCNGC	1 cut(s)	402
BlpI	GCTNAGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	3 cut(s)	33, 119, 318
Bme18I	GGWCC	4 cut(s)	26, 115, 206, 821
BmgT120I	GGNCC	4 cut(s)	26, 115, 206, 821
BmiI	GGNNCC	2 cut(s)	117, 621
BmrFI	CCNGG	3 cut(s)	33, 119, 318
BmtI	GCTAGC	2 cut(s)	554, 780
BoxI	GACNNNNGTC	2 cut(s)	681, 1022
BpiI	GAAGAC	2 cut(s)	50, 681
Bpu10I	CCTNAGC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	628
BpuMI	CCSGG	2 cut(s)	119, 318
BsaBI	GATNNNNATC	2 cut(s)	297, 618
BsaHI	GRCGYC	1 cut(s)	420
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	1 cut(s)	1026
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 257, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 215, 397
Bse1I	ACTGG	2 cut(s)	263, 1009
Bse21I	CCTNAGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	458
Bse8I	GATNNNNATC	2 cut(s)	297, 618
BseAI	TCCGGA	1 cut(s)	1026
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	651
BseJI	GATNNNNATC	2 cut(s)	297, 618
BseLI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	3 cut(s)	51, 406, 1051
BseNI	ACTGG	2 cut(s)	263, 1009
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	813
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	498, 660
BsiSI	CCGG	3 cut(s)	119, 318, 1027
BslI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
BsmAI	GTCTC	2 cut(s)	224, 991
BsnI	GGCC	1 cut(s)	321
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	498, 660
Bsp13I	TCCGGA	1 cut(s)	1026
Bsp143I	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
Bsp1720I	GCTNAGC	1 cut(s)	628
BspACI	CCGC	2 cut(s)	101, 191
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	3 cut(s)	50, 405, 1050
BspEI	TCCGGA	1 cut(s)	1026
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	117, 621
BspMAI	CTGCAG	1 cut(s)	406
BspOI	GCTAGC	2 cut(s)	554, 780
BspPI	GGATC	3 cut(s)	431, 614, 627
BspTNI	GGTCTC	1 cut(s)	224
BsrDI	GCAATG	1 cut(s)	458
BsrI	ACTGG	2 cut(s)	263, 1009
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	138, 608, 683
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	3 cut(s)	552, 778, 967
BstDEI	CTNAG	7 cut(s)	37, 176, 392, 519, 628, 703, 1037
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstKTI	GATC	6 cut(s)	24, 166, 295, 439, 616, 622
BstMAI	GTCTC	2 cut(s)	224, 991
BstMBI	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	67
BstPAI	GACNNNNGTC	2 cut(s)	681, 1022
BstSCI	CCNGG	3 cut(s)	31, 117, 316
BstSFI	CTRYAG	2 cut(s)	402, 679
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	2 cut(s)	50, 681
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
Bsu36I	CCTNAGG	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	321
BtsI	GCAGTG	2 cut(s)	411, 439
BtsIMutI	CAGTG	2 cut(s)	411, 439
Cac8I	GCNNGC	3 cut(s)	552, 778, 967
CciI	TCATGA	1 cut(s)	366
Cfr13I	GGNCC	4 cut(s)	26, 115, 206, 821
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	3 cut(s)	905, 924, 1075
CviAII	CATG	6 cut(s)	64, 187, 367, 481, 938, 1062
CviQI	GTAC	3 cut(s)	905, 924, 1075
DdeI	CTNAG	7 cut(s)	37, 176, 392, 519, 628, 703, 1037
DpnI	GATC	6 cut(s)	23, 165, 294, 438, 615, 621
DpnII	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	206
Ecl136II	GAGCTC	2 cut(s)	496, 658
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	2 cut(s)	498, 660
Eco31I	GGTCTC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	848
Eco47I	GGWCC	4 cut(s)	26, 115, 206, 821
Eco53kI	GAGCTC	2 cut(s)	496, 658
Eco57I	CTGAAG	2 cut(s)	584, 1041
Eco81I	CCTNAGG	1 cut(s)	392
EcoICRI	GAGCTC	2 cut(s)	496, 658
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	848
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	498, 660
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	6 cut(s)	67, 190, 370, 484, 941, 1065
FatI	CATG	6 cut(s)	63, 186, 366, 480, 937, 1061
FauNDI	CATATG	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	402
FriOI	GRGCYC	2 cut(s)	498, 660
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	6 cut(s)	242, 270, 551, 737, 777, 867
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	3 cut(s)	119, 318, 1027
HgaI	GACGC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	6 cut(s)	67, 190, 370, 484, 941, 1065
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	2 cut(s)	128, 1008
HpaII	CCGG	3 cut(s)	119, 318, 1027
Hpy166II	GTNNAC	2 cut(s)	29, 418
Hpy188I	TCNGA	3 cut(s)	603, 641, 991
Hpy188III	TCNNGA	7 cut(s)	242, 367, 611, 617, 713, 867, 1027
Hpy8I	GTNNAC	2 cut(s)	29, 418
HpyAV	CCTTC	2 cut(s)	84, 899
HpyCH4III	ACNGT	3 cut(s)	138, 608, 683
HpyCH4V	TGCA	9 cut(s)	57, 404, 409, 432, 458, 794, 815, 969, 977
HpyF3I	CTNAG	7 cut(s)	37, 176, 392, 519, 628, 703, 1037
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	6 cut(s)	67, 190, 370, 484, 941, 1065
Kpn2I	TCCGGA	1 cut(s)	1026
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
LmnI	GCTCC	3 cut(s)	493, 501, 655
Lsp1109I	GCAGC	1 cut(s)	388
MaeI	CTAG	6 cut(s)	242, 270, 551, 737, 777, 867
MalI	GATC	6 cut(s)	23, 165, 294, 438, 615, 621
MboI	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
MboII	GAAGA	7 cut(s)	55, 275, 293, 590, 686, 926, 1004
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	2 cut(s)	498, 660
MluCI	AATT	7 cut(s)	71, 109, 635, 800, 810, 893, 996
MmeI	TCCRAC	2 cut(s)	243, 372
MnlI	CCTC	9 cut(s)	86, 209, 259, 291, 401, 577, 633, 969, 1062
MroI	TCCGGA	1 cut(s)	1026
MseI	TTAA	4 cut(s)	171, 288, 386, 741
MslI	CAYNNNNRTG	2 cut(s)	507, 1060
MspI	CCGG	3 cut(s)	119, 318, 1027
MspR9I	CCNGG	3 cut(s)	33, 119, 318
MvaI	CCWGG	1 cut(s)	33
NciI	CCSGG	2 cut(s)	119, 318
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
NheI	GCTAGC	2 cut(s)	550, 776
NlaIII	CATG	6 cut(s)	67, 190, 370, 484, 941, 1065
NlaIV	GGNNCC	2 cut(s)	117, 621
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	128, 1008
PkrI	GCNGC	1 cut(s)	403
PshAI	GACNNNNGTC	2 cut(s)	681, 1022
PsiI	TTATAA	1 cut(s)	930
Psp124BI	GAGCTC	2 cut(s)	498, 660
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	117, 621
PspPI	GGNCC	4 cut(s)	26, 115, 206, 821
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	3 cut(s)	906, 925, 1076
RsaNI	GTAC	3 cut(s)	905, 924, 1075
RseI	CAYNNNNRTG	2 cut(s)	507, 1060
SacI	GAGCTC	2 cut(s)	498, 660
SaqAI	TTAA	4 cut(s)	171, 288, 386, 741
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	6 cut(s)	21, 163, 292, 436, 613, 619
Sau96I	GGNCC	4 cut(s)	26, 115, 206, 821
ScrFI	CCNGG	3 cut(s)	33, 119, 318
SduI	GDGCHC	2 cut(s)	498, 660
SfcI	CTRYAG	2 cut(s)	402, 679
SinI	GGWCC	4 cut(s)	26, 115, 206, 821
SmiMI	CAYNNNNRTG	2 cut(s)	507, 1060
SpeI	ACTAGT	1 cut(s)	736
Sse9I	AATT	7 cut(s)	71, 109, 635, 800, 810, 893, 996
SsiI	CCGC	2 cut(s)	101, 191
SspI	AATATT	2 cut(s)	253, 361
SspMI	CTAG	6 cut(s)	242, 270, 551, 737, 777, 867
SstI	GAGCTC	2 cut(s)	498, 660
StyD4I	CCNGG	3 cut(s)	31, 117, 316
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	3 cut(s)	138, 608, 683
TaqI	TCGA	1 cut(s)	78
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	7 cut(s)	71, 109, 635, 800, 810, 893, 996
TatI	WGTACW	2 cut(s)	904, 923
TfiI	GAWTC	2 cut(s)	128, 1008
Tru1I	TTAA	4 cut(s)	171, 288, 386, 741
Tru9I	TTAA	4 cut(s)	171, 288, 386, 741
TscAI	CASTG	2 cut(s)	411, 439
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	5 cut(s)	120, 156, 383, 900, 926
TspRI	CASTG	2 cut(s)	411, 439
VpaK11BI	GGWCC	4 cut(s)	26, 115, 206, 821
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	635, 800
XbaI	TCTAGA	2 cut(s)	241, 866
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	6 cut(s)	242, 270, 551, 737, 777, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.