Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Forward (+)

24883670 .. 24887409

Gene Structure 3740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g33040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTGTTCGGGCAAGTCGTGATCGGTCCACCTGGCTCAGGGAAGACCACTTACTGCAACGGCATGTCGCAGTTTCTCGAACTCATCGGAAGGAAAGTTGCGGTTATCAATTTGGATCCGGCTAACGATACATTACCGTATGATTGTGCTGTGAACATAGCTGATCTTATCAAACTAAGTGACGTCATGGCGGAACATTCTCTTGGTCCAAATGGAGGTCTTGTATTTTGCATGGATTTTCTAGAGAAGAATATTGACTGGTTGGAGGCTAAGTTAAAACCTCTGCTTAAAAATCACTATCTTCTCTTTGATTTTCCTGGCCAAGTGGAACTATTCTTTCTTCATTCCAATGCCAAGAACATTATCATGAGACTCGTAAAGAAGTTAAACCTCAGGTTGGCTGCAGTACATTTAGTTGACGCCCATCTTTGCAGTGACCCTGCTAAGTATGTCAGTGCGTTGCTTCTCTCTTTATCAACCATGTTACATATGGACCTCCCGCACATTAATGTCTTGTCCAAGATTGATTTGATACAGAACTATGGAAAGCTAGCTTTCAACCTTGATTTTTATACTGATGTGGAGGATTTATCTTATCTTCAGAACAGTCTTGATCAGGATCCGCGCTCCGCTAAATTCAGAAAGCTTACAAAGGAGCTGTGTGGTGTCATAGAAGATTTCAGTCTTGTCAACTTTACAACTTTAGATATTCAGGATAAAGAGAGCGTGGGAAAGCTAGTTAAGCTGATAGACAAGACCAATGGATACATTTTTGCTAGCATTGAAGCTAGTGCAGTAGAATTCAGCAAAATTGCAGTTGGTCCTGTTGATTGGGATTACCACAGAGTTGGAGAAGTGCAAGAGAAATACGTCAAGTTTGATGAAGACTTTGATGACATTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

302

Amino Acids

33.84

Weight (kDa)

5.05

Isoelectric Point (pI)

26.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	7 - 255	1.9e-79	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	186
AccII	CGCG	1 cut(s)	625
AciI	CCGC	5 cut(s)	101, 191, 500, 623, 630
AclWI	GGATC	4 cut(s)	110, 123, 614, 627
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	635, 800
AcuI	CTGAAG	1 cut(s)	584
AcyI	GRCGYC	2 cut(s)	183, 420
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
AgsI	TTSAA	3 cut(s)	559, 785, 902
AjnI	CCWGG	2 cut(s)	31, 316
AjuI	GAANNNNNNNTTGG	2 cut(s)	186, 218
AluBI	AGCT	8 cut(s)	161, 550, 554, 646, 658, 736, 745, 788
AluI	AGCT	8 cut(s)	161, 550, 554, 646, 658, 736, 745, 788
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	4 cut(s)	110, 123, 614, 627
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	2 cut(s)	635, 800
AseI	ATTAAT	1 cut(s)	507
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	4 cut(s)	26, 206, 493, 821
AsuNHI	GCTAGC	2 cut(s)	550, 776
AvaII	GGWCC	4 cut(s)	26, 206, 493, 821
AxyI	CCTNAGG	1 cut(s)	392
BalI	TGGCCA	1 cut(s)	321
BamHI	GGATCC	2 cut(s)	115, 619
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbsI	GAAGAC	2 cut(s)	50, 891
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	2 cut(s)	33, 318
BciVI	GTATCC	1 cut(s)	758
BclI	TGATCA	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	364
BfaI	CTAG	5 cut(s)	242, 551, 737, 777, 789
BfmI	CTRYAG	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	758
BisI	GCNGC	1 cut(s)	402
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	2 cut(s)	33, 318
Bme18I	GGWCC	4 cut(s)	26, 206, 493, 821
BmgT120I	GGNCC	4 cut(s)	26, 206, 493, 821
BmiI	GGNNCC	2 cut(s)	117, 621
BmrFI	CCNGG	2 cut(s)	33, 318
BmtI	GCTAGC	2 cut(s)	554, 780
BpiI	GAAGAC	2 cut(s)	50, 891
Bpu10I	CCTNAGC	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	618
BsaHI	GRCGYC	2 cut(s)	183, 420
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 257, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 215, 397
Bse1I	ACTGG	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	392
Bse8I	GATNNNNATC	1 cut(s)	618
BseBI	CCWGG	2 cut(s)	33, 318
BseJI	GATNNNNATC	1 cut(s)	618
BseLI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
BseMII	CTCAG	2 cut(s)	51, 406
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	813
Bsh1236I	CGCG	1 cut(s)	625
BshFI	GGCC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
BsmAI	GTCTC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	321
Bsp143I	GATC	5 cut(s)	21, 115, 163, 613, 619
BspACI	CCGC	5 cut(s)	101, 191, 500, 623, 630
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	2 cut(s)	50, 405
BspFNI	CGCG	1 cut(s)	625
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	117, 621
BspMAI	CTGCAG	1 cut(s)	406
BspOI	GCTAGC	2 cut(s)	554, 780
BspPI	GGATC	4 cut(s)	110, 123, 614, 627
BsrI	ACTGG	1 cut(s)	263
BssMI	GATC	5 cut(s)	21, 115, 163, 613, 619
BssNI	GRCGYC	2 cut(s)	183, 420
Bst2UI	CCWGG	2 cut(s)	33, 318
Bst4CI	ACNGT	2 cut(s)	138, 608
BstACI	GRCGYC	2 cut(s)	183, 420
BstC8I	GCNNGC	2 cut(s)	552, 778
BstDEI	CTNAG	5 cut(s)	37, 176, 270, 392, 444
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstFNI	CGCG	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	5 cut(s)	24, 118, 166, 616, 622
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	5 cut(s)	21, 115, 163, 613, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	742
BstNI	CCWGG	2 cut(s)	33, 318
BstNSI	RCATGY	1 cut(s)	67
BstSCI	CCNGG	2 cut(s)	31, 316
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	625
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	2 cut(s)	50, 891
BstX2I	RGATCY	2 cut(s)	115, 619
BstXI	CCANNNNNNTGG	1 cut(s)	848
BstYI	RGATCY	2 cut(s)	115, 619
Bsu36I	CCTNAGG	1 cut(s)	392
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	439, 460
Cac8I	GCNNGC	2 cut(s)	552, 778
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	627
Cfr13I	GGNCC	4 cut(s)	26, 206, 493, 821
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	407
CviAII	CATG	5 cut(s)	64, 187, 232, 367, 481
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	5 cut(s)	37, 176, 270, 392, 444
DpnI	GATC	5 cut(s)	23, 117, 165, 615, 621
DpnII	GATC	5 cut(s)	21, 115, 163, 613, 619
EaeI	YGGCCR	1 cut(s)	319
EciI	GGCGGA	1 cut(s)	206
Eco47I	GGWCC	4 cut(s)	26, 206, 493, 821
Eco57I	CTGAAG	1 cut(s)	584
Eco81I	CCTNAGG	1 cut(s)	392
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	2 cut(s)	31, 316
FaeI	CATG	5 cut(s)	67, 190, 235, 370, 484
FatI	CATG	5 cut(s)	63, 186, 231, 366, 480
FauI	CCCGC	1 cut(s)	507
FauNDI	CATATG	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	402
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	5 cut(s)	242, 551, 737, 777, 789
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	1 cut(s)	627
Hin1I	GRCGYC	2 cut(s)	183, 420
Hin1II	CATG	5 cut(s)	67, 190, 235, 370, 484
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	2 cut(s)	418, 691
HindII	GTYRAC	2 cut(s)	418, 691
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	1 cut(s)	372
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	4 cut(s)	29, 154, 418, 691
Hpy188I	TCNGA	3 cut(s)	89, 603, 641
Hpy188III	TCNNGA	7 cut(s)	19, 77, 242, 367, 611, 617, 713
Hpy8I	GTNNAC	4 cut(s)	29, 154, 418, 691
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	2 cut(s)	138, 608
HpyCH4IV	ACGT	2 cut(s)	183, 870
HpyCH4V	TGCA	7 cut(s)	57, 231, 404, 432, 794, 815, 859
HpyF10VI	GCNNNNNNNGC	1 cut(s)	742
HpyF3I	CTNAG	5 cut(s)	37, 176, 270, 392, 444
HpySE526I	ACGT	2 cut(s)	183, 870
Hsp92I	GRCGYC	2 cut(s)	183, 420
Hsp92II	CATG	5 cut(s)	67, 190, 235, 370, 484
HspAI	GCGC	1 cut(s)	625
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	5 cut(s)	21, 115, 163, 613, 619
LmnI	GCTCC	2 cut(s)	632, 655
Lsp1109I	GCAGC	1 cut(s)	388
MaeI	CTAG	5 cut(s)	242, 551, 737, 777, 789
MaeII	ACGT	2 cut(s)	183, 870
MaeIII	GTNAC	3 cut(s)	179, 434, 483
MalI	GATC	5 cut(s)	23, 117, 165, 615, 621
MboI	GATC	5 cut(s)	21, 115, 163, 613, 619
MboII	GAAGA	7 cut(s)	55, 259, 293, 332, 590, 686, 896
MflI	RGATCY	2 cut(s)	115, 619
MlsI	TGGCCA	1 cut(s)	321
MluCI	AATT	4 cut(s)	109, 635, 800, 810
MluNI	TGGCCA	1 cut(s)	321
MlyI	GAGTC	1 cut(s)	366
MmeI	TCCRAC	2 cut(s)	243, 829
MnlI	CCTC	6 cut(s)	209, 259, 291, 401, 506, 577
Mox20I	TGGCCA	1 cut(s)	321
MscI	TGGCCA	1 cut(s)	321
MseI	TTAA	5 cut(s)	275, 288, 386, 507, 741
MslI	CAYNNNNRTG	3 cut(s)	348, 365, 507
Msp20I	TGGCCA	1 cut(s)	321
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	33, 318
MvaI	CCWGG	2 cut(s)	33, 318
MvnI	CGCG	1 cut(s)	625
MwoI	GCNNNNNNNGC	1 cut(s)	742
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	5 cut(s)	21, 115, 163, 613, 619
NheI	GCTAGC	2 cut(s)	550, 776
NlaIII	CATG	5 cut(s)	67, 190, 235, 370, 484
NlaIV	GGNNCC	2 cut(s)	117, 621
NmuCI	GTSAC	2 cut(s)	179, 434
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	403
PleI	GAGTC	1 cut(s)	366
PpsI	GAGTC	1 cut(s)	366
PshBI	ATTAAT	1 cut(s)	507
Psp6I	CCWGG	2 cut(s)	31, 316
PspGI	CCWGG	2 cut(s)	31, 316
PspN4I	GGNNCC	2 cut(s)	117, 621
PspPI	GGNCC	4 cut(s)	26, 206, 493, 821
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	2 cut(s)	115, 619
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
RseI	CAYNNNNRTG	3 cut(s)	348, 365, 507
SaqAI	TTAA	5 cut(s)	275, 288, 386, 507, 741
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	5 cut(s)	21, 115, 163, 613, 619
Sau96I	GGNCC	4 cut(s)	26, 206, 493, 821
SchI	GAGTC	1 cut(s)	366
ScrFI	CCNGG	2 cut(s)	33, 318
SfcI	CTRYAG	1 cut(s)	402
SinI	GGWCC	4 cut(s)	26, 206, 493, 821
SmiMI	CAYNNNNRTG	3 cut(s)	348, 365, 507
Sse9I	AATT	4 cut(s)	109, 635, 800, 810
SsiI	CCGC	5 cut(s)	101, 191, 500, 623, 630
SspI	AATATT	1 cut(s)	253
SspMI	CTAG	5 cut(s)	242, 551, 737, 777, 789
StyD4I	CCNGG	2 cut(s)	31, 316
TaaI	ACNGT	2 cut(s)	138, 608
TaiI	ACGT	2 cut(s)	186, 873
TaqI	TCGA	1 cut(s)	78
TaqII	GACCGA	1 cut(s)	14
TasI	AATT	4 cut(s)	109, 635, 800, 810
TatI	WGTACW	1 cut(s)	406
Tru1I	TTAA	5 cut(s)	275, 288, 386, 507, 741
Tru9I	TTAA	5 cut(s)	275, 288, 386, 507, 741
TscAI	CASTG	2 cut(s)	439, 460
TseFI	GTSAC	2 cut(s)	179, 434
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	2 cut(s)	179, 434
TspDTI	ATGAA	2 cut(s)	332, 897
TspRI	CASTG	2 cut(s)	439, 460
VpaK11BI	GGWCC	4 cut(s)	26, 206, 493, 821
VspI	ATTAAT	1 cut(s)	507
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	635, 800
XbaI	TCTAGA	1 cut(s)	241
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	5 cut(s)	242, 551, 737, 777, 789
ZraI	GACGTC	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.