Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006874

Physical Location & Seq

Genomic Coordinates Reverse (-)

64889475 .. 64892064

Gene Structure 2590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG487800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGTGTTTGGGCAAGTTGTGATTGGTCCACCTGGCTCAGGGAAGACCACTTACTGCAACGGCATGTCGCAATTCCTCGAACTCATTGGAAGGAAAGTTGCGGTTATCAATTTGGACCCGGCTAACGATTCATTACCGTATGAATGTGCTGTGAACATAGCTGATCTTGTAAAACTAGGTGATGTCATGGCGGAACATTCTCTCGGTCCAAATGGAGGTCTGGTATATTGCATGGATTATCTAGAGAAAAATATTGACTGGTTGGAGGCTAAGTTGAAACCTCTTCTTAAAGATCACTATCTTCTCTTTGATTTTCCCGGCCAAGTGGAACTATTCTTTCTTTATTCCAACGCCAAGAATATTATCATGAAACTCATAAAGAAGTTAAACCTCAGGTTGGCTGCAGTGCATTTAGTTGACGCCCATCTTTGCAGTGATCCTGCGAAGTATGTTAGTGCATTGCTTCTCTCTTTATCAACCATGATCCATATGGAGCTCCCACACATAAATGTCTTGTCTAAGATTGATTTGATACAGAACTATGGAAAGCTAGCTTTCAACCTTGATTTCTATACTGATGTGGAGGATTTATCTTATCTTCAGAACAGTCTTGATCAGGATCCTCGCTTAGCTAAATTCAGAAAGCTTACCAAGGAGCTCTGTGGTGTCATAGAAGACTACAGTCTTGTCAGCTTTACAACCTTAGATATTCAGGATAAAGAGAGCGTGGGGAAACTAGTTAAGCTGATAGACAAGACCAATGGATATATTTTTGCTAGCATTGAAGCAAGTGCAGTAGAATTCAGCAAAATTGCAGTTGGTCCTGTTGATTGGGATTACCACAGATATCCTTTTATTTCTTATTCTAGAATACTTTTGCTCTTATTCCTTCATTTTCTCACAGTTGGAGAAGTGCAAGAGAAGTACATCAAGTTTGATGAAGACTGTGATGACAATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0006996 GO:0007275 GO:0008150 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009987 GO:0010154 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0048316 GO:0048507 GO:0048608 GO:0048731 GO:0048856 GO:0051301 GO:0061458 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:1902182

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ATP_bind_1

Protein Analysis

320

Amino Acids

36.18

Weight (kDa)

5.07

Isoelectric Point (pI)

27.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP_bind_1	PF03029	7 - 255	9.1e-79	Conserved hypothetical ATP binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006874)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22370 AT5G22370 AT5G22370
fragaria_vesca	FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040 FvH4_2g33040
malus_domestica	MD08G1081600.v1.1 MD15G1068400.v1.1
prunus_persica	Prupe.1G422300_v2.0.a1 Prupe.1G422300_v2.0.a1
pyrus_communis	pycom08g06710 pycom15g06480
rosa_chinensis	RchiOBHm_Chr6g0309671
rosa_laevigata	RLG00000010545
rosa_multiflora	Rmu_sc0007632.1_g000009
rosa_roxburghii	Rroxscaffold_7G00159240
rosa_rugosa	Rorug06G0373800 Rorug06G0373900
rosa_samantha	Rh6AG487300 Rh6BG497000 Rh6CG501600 Rh6DG487800
rosa_wichuraiana	Rw6G042450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	101, 191
AclWI	GGATC	4 cut(s)	431, 478, 614, 627
AcoI	YGGCCR	1 cut(s)	319
AcsI	RAATTY	2 cut(s)	635, 800
AcuI	CTGAAG	1 cut(s)	584
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	1 cut(s)	926
AfiI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
AgsI	TTSAA	3 cut(s)	277, 559, 785
AhlI	ACTAGT	1 cut(s)	736
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	9 cut(s)	161, 496, 550, 554, 632, 646, 658, 693, 745
AluI	AGCT	9 cut(s)	161, 496, 550, 554, 632, 646, 658, 693, 745
Alw21I	GWGCWC	2 cut(s)	498, 660
AlwI	GGATC	4 cut(s)	431, 478, 614, 627
AoxI	GGCC	1 cut(s)	319
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	2 cut(s)	635, 800
AspS9I	GGNCC	4 cut(s)	26, 115, 206, 821
AsuC2I	CCSGG	2 cut(s)	119, 318
AsuHPI	GGTGA	1 cut(s)	191
AsuNHI	GCTAGC	2 cut(s)	550, 776
AvaII	GGWCC	4 cut(s)	26, 115, 206, 821
AxyI	CCTNAGG	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	498, 660
BarI	GAAGNNNNNNTAC	2 cut(s)	35, 67
BbsI	GAAGAC	3 cut(s)	50, 681, 948
Bbv12I	GWGCWC	2 cut(s)	498, 660
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	33
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	2 cut(s)	119, 318
BcuI	ACTAGT	1 cut(s)	736
BfaI	CTAG	6 cut(s)	176, 242, 551, 737, 777, 867
BfmI	CTRYAG	2 cut(s)	402, 679
BisI	GCNGC	1 cut(s)	402
BlpI	GCTNAGC	1 cut(s)	628
BlsI	GCNGC	1 cut(s)	403
Bme1390I	CCNGG	3 cut(s)	33, 119, 318
Bme18I	GGWCC	4 cut(s)	26, 115, 206, 821
BmgT120I	GGNCC	4 cut(s)	26, 115, 206, 821
BmiI	GGNNCC	2 cut(s)	117, 621
BmrFI	CCNGG	3 cut(s)	33, 119, 318
BmtI	GCTAGC	2 cut(s)	554, 780
BoxI	GACNNNNGTC	1 cut(s)	681
BpiI	GAAGAC	3 cut(s)	50, 681, 948
Bpu10I	CCTNAGC	1 cut(s)	37
Bpu1102I	GCTNAGC	1 cut(s)	628
BpuMI	CCSGG	2 cut(s)	119, 318
BsaBI	GATNNNNATC	2 cut(s)	297, 618
BsaHI	GRCGYC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	651
BsaXI	ACNNNNNCTCC	4 cut(s)	207, 237, 257, 287
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 215, 397
Bse1I	ACTGG	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	392
Bse3DI	GCAATG	1 cut(s)	458
Bse8I	GATNNNNATC	2 cut(s)	297, 618
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	651
BseJI	GATNNNNATC	2 cut(s)	297, 618
BseLI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	2 cut(s)	51, 406
BseNI	ACTGG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	388
BsgI	GTGCAG	1 cut(s)	813
BshFI	GGCC	1 cut(s)	321
BsiHKAI	GWGCWC	2 cut(s)	498, 660
BsiSI	CCGG	2 cut(s)	119, 318
BslI	CCNNNNNNNGG	3 cut(s)	38, 215, 397
BsnI	GGCC	1 cut(s)	321
Bsp1286I	GDGCHC	2 cut(s)	498, 660
Bsp143I	GATC	6 cut(s)	163, 292, 436, 483, 613, 619
Bsp1720I	GCTNAGC	1 cut(s)	628
BspACI	CCGC	2 cut(s)	101, 191
BspANI	GGCC	1 cut(s)	321
BspCNI	CTCAG	2 cut(s)	50, 405
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	2 cut(s)	117, 621
BspMAI	CTGCAG	1 cut(s)	406
BspOI	GCTAGC	2 cut(s)	554, 780
BspPI	GGATC	4 cut(s)	431, 478, 614, 627
BsrDI	GCAATG	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	6 cut(s)	163, 292, 436, 483, 613, 619
BssNI	GRCGYC	1 cut(s)	420
BssT1I	CCWWGG	1 cut(s)	651
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	5 cut(s)	138, 608, 683, 904, 947
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	552, 778
BstDEI	CTNAG	6 cut(s)	37, 270, 392, 519, 628, 703
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstKTI	GATC	6 cut(s)	166, 295, 439, 486, 616, 622
BstMBI	GATC	6 cut(s)	163, 292, 436, 483, 613, 619
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	67
BstPAI	GACNNNNGTC	1 cut(s)	681
BstSCI	CCNGG	3 cut(s)	31, 117, 316
BstSFI	CTRYAG	2 cut(s)	402, 679
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	3 cut(s)	50, 681, 948
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
Bsu36I	CCTNAGG	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	321
BtsI	GCAGTG	2 cut(s)	411, 439
BtsIMutI	CAGTG	2 cut(s)	411, 439
Cac8I	GCNNGC	2 cut(s)	552, 778
CciI	TCATGA	1 cut(s)	366
Cfr13I	GGNCC	4 cut(s)	26, 115, 206, 821
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	925
CviAII	CATG	5 cut(s)	64, 187, 232, 367, 481
CviQI	GTAC	1 cut(s)	925
DdeI	CTNAG	6 cut(s)	37, 270, 392, 519, 628, 703
DpnI	GATC	6 cut(s)	165, 294, 438, 485, 615, 621
DpnII	GATC	6 cut(s)	163, 292, 436, 483, 613, 619
EaeI	YGGCCR	1 cut(s)	319
Eam1104I	CTCTTC	1 cut(s)	288
EarI	CTCTTC	1 cut(s)	288
EciI	GGCGGA	1 cut(s)	206
Ecl136II	GAGCTC	2 cut(s)	496, 658
Eco130I	CCWWGG	1 cut(s)	651
Eco24I	GRGCYC	2 cut(s)	498, 660
Eco32I	GATATC	1 cut(s)	848
Eco47I	GGWCC	4 cut(s)	26, 115, 206, 821
Eco53kI	GAGCTC	2 cut(s)	496, 658
Eco57I	CTGAAG	1 cut(s)	584
Eco81I	CCTNAGG	1 cut(s)	392
EcoICRI	GAGCTC	2 cut(s)	496, 658
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	848
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	2 cut(s)	498, 660
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	5 cut(s)	67, 190, 235, 370, 484
FatI	CATG	5 cut(s)	63, 186, 231, 366, 480
FauNDI	CATATG	1 cut(s)	489
FbaI	TGATCA	1 cut(s)	613
Fnu4HI	GCNGC	1 cut(s)	402
FriOI	GRGCYC	2 cut(s)	498, 660
Fsp4HI	GCNGC	1 cut(s)	402
FspBI	CTAG	6 cut(s)	176, 242, 551, 737, 777, 867
GluI	GCNGC	1 cut(s)	402
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	2 cut(s)	119, 318
HgaI	GACGC	1 cut(s)	428
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	5 cut(s)	67, 190, 235, 370, 484
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	2 cut(s)	119, 318
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	3 cut(s)	29, 154, 418
Hpy188I	TCNGA	2 cut(s)	603, 641
Hpy188III	TCNNGA	6 cut(s)	242, 367, 611, 617, 713, 867
Hpy8I	GTNNAC	3 cut(s)	29, 154, 418
HpyAV	CCTTC	2 cut(s)	84, 899
HpyCH4III	ACNGT	5 cut(s)	138, 608, 683, 904, 947
HpyCH4V	TGCA	9 cut(s)	57, 231, 404, 409, 432, 458, 794, 815, 916
HpyF3I	CTNAG	6 cut(s)	37, 270, 392, 519, 628, 703
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	5 cut(s)	67, 190, 235, 370, 484
Ksp22I	TGATCA	1 cut(s)	613
Kzo9I	GATC	6 cut(s)	163, 292, 436, 483, 613, 619
LmnI	GCTCC	3 cut(s)	493, 501, 655
Lsp1109I	GCAGC	1 cut(s)	388
MaeI	CTAG	6 cut(s)	176, 242, 551, 737, 777, 867
MalI	GATC	6 cut(s)	165, 294, 438, 485, 615, 621
MboI	GATC	6 cut(s)	163, 292, 436, 483, 613, 619
MboII	GAAGA	6 cut(s)	55, 275, 293, 590, 686, 953
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	2 cut(s)	498, 660
MluCI	AATT	5 cut(s)	71, 109, 635, 800, 810
MmeI	TCCRAC	3 cut(s)	243, 372, 886
MnlI	CCTC	7 cut(s)	86, 209, 259, 291, 401, 577, 633
MseI	TTAA	3 cut(s)	288, 386, 741
MslI	CAYNNNNRTG	1 cut(s)	507
MspI	CCGG	2 cut(s)	119, 318
MspR9I	CCNGG	3 cut(s)	33, 119, 318
MvaI	CCWGG	1 cut(s)	33
NciI	CCSGG	2 cut(s)	119, 318
NdeI	CATATG	1 cut(s)	489
NdeII	GATC	6 cut(s)	163, 292, 436, 483, 613, 619
NheI	GCTAGC	2 cut(s)	550, 776
NlaIII	CATG	5 cut(s)	67, 190, 235, 370, 484
NlaIV	GGNNCC	2 cut(s)	117, 621
NspI	RCATGY	1 cut(s)	67
PagI	TCATGA	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	1 cut(s)	403
PshAI	GACNNNNGTC	1 cut(s)	681
Psp124BI	GAGCTC	2 cut(s)	498, 660
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	117, 621
PspPI	GGNCC	4 cut(s)	26, 115, 206, 821
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	619
RsaI	GTAC	1 cut(s)	926
RsaNI	GTAC	1 cut(s)	925
RseI	CAYNNNNRTG	1 cut(s)	507
SacI	GAGCTC	2 cut(s)	498, 660
SaqAI	TTAA	3 cut(s)	288, 386, 741
SatI	GCNGC	1 cut(s)	402
Sau3AI	GATC	6 cut(s)	163, 292, 436, 483, 613, 619
Sau96I	GGNCC	4 cut(s)	26, 115, 206, 821
ScrFI	CCNGG	3 cut(s)	33, 119, 318
SduI	GDGCHC	2 cut(s)	498, 660
SfcI	CTRYAG	2 cut(s)	402, 679
SinI	GGWCC	4 cut(s)	26, 115, 206, 821
SmiMI	CAYNNNNRTG	1 cut(s)	507
SpeI	ACTAGT	1 cut(s)	736
Sse9I	AATT	5 cut(s)	71, 109, 635, 800, 810
SsiI	CCGC	2 cut(s)	101, 191
SspI	AATATT	2 cut(s)	253, 361
SspMI	CTAG	6 cut(s)	176, 242, 551, 737, 777, 867
SstI	GAGCTC	2 cut(s)	498, 660
StyD4I	CCNGG	3 cut(s)	31, 117, 316
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	5 cut(s)	138, 608, 683, 904, 947
TaqI	TCGA	1 cut(s)	78
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	5 cut(s)	71, 109, 635, 800, 810
TatI	WGTACW	1 cut(s)	924
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	3 cut(s)	288, 386, 741
Tru9I	TTAA	3 cut(s)	288, 386, 741
TscAI	CASTG	2 cut(s)	411, 439
TseI	GCWGC	1 cut(s)	401
TspDTI	ATGAA	5 cut(s)	120, 156, 383, 881, 954
TspRI	CASTG	2 cut(s)	411, 439
VpaK11BI	GGWCC	4 cut(s)	26, 115, 206, 821
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	635, 800
XbaI	TCTAGA	2 cut(s)	241, 866
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XspI	CTAG	6 cut(s)	176, 242, 551, 737, 777, 867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.