Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016106

Physical Location & Seq

Genomic Coordinates Reverse (-)

7653257 .. 7654835

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGCATATACATATGATGAATCGAGATGAGCATATTGCAAAGAAAGTTGAAGGATCAATCTCTAGCTTCTCCGGGGAGACCAGTACTTCCTCAAAACAAATCTATGTTAATCCCGTGACCACGACCGGGACGAAATCAATGGAAGACGACGACGTTTCACTCTCTCTTCTATACAATCTATCTACCTTACATGAAAAAGTCCATCAGATCCAATCTCTGGTCAGCTTCTACATGGTATCTACTAATAACATTAACCAATCCTCGGGGTCAACGTCTTTGGCCGTGGCTAACATCGGAAGTTTGGTTCAAGAGATCATCACGGCTGCTTCATCCATGTTATATACTTGCCAACAACTCCAAATCGGATCTAACAACAACAACAACGATATCGATAATGATCAAACCGTAGATGCAATGGTTTTGGAGTTTTCCCGACAAGAAACCGACCCGGGTCATGATTTTGTGCAAGAGTCGACCAACCTTTTTGGTGTCCAAGAAAGAGGGCAGATCTCGTTTCCCGACCAGAATCTTGATTGGTACAACACCGAAACCATAAACCCTAAAAAAGATAAACATCGTTCTAAACCAAGTTCCGGGAGCTACGATATACTGGAGCTAGACGTAGCGGACCTACTAGCGAAATACACGCATTACTGCCAGATTTGTGGGAAAGGGTTTAAGAGAGACGCTAATCTAAGGATGCACATGAGAGCGCACGGGGATGAGTACAAGACACGTGAGGCCTTGATCAGCCCAACGAGCCAAGACAAGAAAGGAGGATACTCGTTAAAGAAACATTACTACTCCTGTCCTCAACACGGGTGTAGATGGAACCAGAGGCACGAGAAGTTTCAACCGTTGAAATCTGTGATTTGCGCCAAGAATCATTACAAGAGGAGTCATTGTCCCAAAATGTATATGTGCAGGAGATGTAGTGTGAAGCATTTCTCGGTTCTGTCTGATCTTAGGACACACGAGAAGCATTGTGGGGATATAAAGTGGGTTTGCTCTTGTGGGACTAAATTTTCTAGGAAAGACAAGCTGATGAGCCACGTTTCTTTGTTTTTGGGCCACGTACCGGCACATGGGTCGTCCAAGCCGCCGACAATCACCCTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010033 GO:0010035 GO:0010038 GO:0010044 GO:0010200 GO:0010243 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

373

Amino Acids

42.25

Weight (kDa)

8.7

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	268 - 302	4.2e-21	STOP2-like, C2H2-type zinc finger
zf-C2H2_STOP2_C	PF23118	333 - 361	1e-14	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22890
fragaria_vesca	FvH4_3g30580
malus_domestica	MD03G1128200.v1.1 MD11G1149000.v1.1
prunus_persica	Prupe.6G113300_v2.0.a1
pyrus_communis	pycom11g12190
rosa_chinensis	RchiOBHm_Chr5g0056621
rosa_laevigata	RLG00000035112
rosa_multiflora	Rmu_sc0004101.1_g000040 Rmu_sc0008982.1_g000004
rosa_rugosa	Rorug05G0301000
rosa_samantha	Rh5BG383000 Rh5CG406200 Rh5DG395800
rosa_wichuraiana	Rw5G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AccI	GTMKAC	1 cut(s)	473
AciI	CCGC	2 cut(s)	626, 1100
AclWI	GGATC	3 cut(s)	61, 202, 373
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	1022
AcvI	CACGTG	1 cut(s)	737
AfaI	GTAC	4 cut(s)	85, 539, 728, 1077
AfiI	CCNNNNNNNGG	7 cut(s)	126, 217, 262, 593, 818, 1078, 1085
AflIII	ACRYGT	1 cut(s)	734
AgsI	TTSAA	4 cut(s)	50, 308, 854, 862
AloI	GAACNNNNNNTCC	2 cut(s)	288, 320
AluBI	AGCT	5 cut(s)	66, 225, 600, 616, 1042
AluI	AGCT	5 cut(s)	66, 225, 600, 616, 1042
Alw26I	GTCTC	2 cut(s)	71, 678
AlwI	GGATC	3 cut(s)	61, 202, 373
Ama87I	CYCGRG	2 cut(s)	262, 448
AoxI	GGCC	3 cut(s)	279, 741, 1069
ApeKI	GCWGC	1 cut(s)	323
ApoI	RAATTY	1 cut(s)	1022
Asp700I	GAANNNNTTC	1 cut(s)	944
AspLEI	GCGC	2 cut(s)	715, 878
AspS9I	GGNCC	2 cut(s)	628, 1069
AsuC2I	CCSGG	5 cut(s)	73, 127, 449, 450, 595
AsuHPI	GGTGA	1 cut(s)	1102
AvaI	CYCGRG	2 cut(s)	262, 448
AvaII	GGWCC	1 cut(s)	628
BauI	CACGAG	2 cut(s)	842, 974
BbrPI	CACGTG	1 cut(s)	737
BbsI	GAAGAC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	210, 822
BceAI	ACGGC	2 cut(s)	266, 336
BcgI	CGANNNNNNTGC	2 cut(s)	1071, 1105
BciVI	GTATCC	1 cut(s)	773
BclI	TGATCA	2 cut(s)	397, 747
BcnI	CCSGG	5 cut(s)	73, 127, 449, 450, 595
BcoDI	GTCTC	2 cut(s)	71, 678
BfaI	CTAG	4 cut(s)	63, 617, 635, 1029
BfuI	GTATCC	1 cut(s)	773
BglII	AGATCT	1 cut(s)	507
BisI	GCNGC	2 cut(s)	324, 1100
BlsI	GCNGC	2 cut(s)	325, 1101
BmcAI	AGTACT	1 cut(s)	85
Bme1390I	CCNGG	5 cut(s)	73, 127, 449, 450, 595
Bme18I	GGWCC	1 cut(s)	628
BmeT110I	CYCGRG	2 cut(s)	262, 448
BmgT120I	GGNCC	2 cut(s)	628, 1069
BmiI	GGNNCC	1 cut(s)	833
BmrFI	CCNGG	5 cut(s)	73, 127, 449, 450, 595
BmsI	GCATC	2 cut(s)	400, 690
BoxI	GACNNNNGTC	1 cut(s)	450
BpiI	GAAGAC	1 cut(s)	150
BpmI	CTGGAG	1 cut(s)	632
BpuMI	CCSGG	5 cut(s)	73, 127, 449, 450, 595
Bsa29I	ATCGAT	1 cut(s)	390
BsaAI	YACGTR	2 cut(s)	737, 1075
BsaBI	GATNNNNATC	2 cut(s)	396, 573
BsaI	GGTCTC	1 cut(s)	71
BsaJI	CCNNGG	4 cut(s)	72, 261, 282, 448
BsaXI	ACNNNNNCTCC	4 cut(s)	889, 919, 919, 949
Bsc4I	CCNNNNNNNGG	7 cut(s)	126, 217, 262, 593, 818, 1078, 1085
Bse118I	RCCGGY	1 cut(s)	1078
Bse1I	ACTGG	2 cut(s)	81, 615
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	2 cut(s)	396, 573
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	4 cut(s)	72, 261, 282, 448
BseGI	GGATG	3 cut(s)	329, 705, 727
BseJI	GATNNNNATC	2 cut(s)	396, 573
BseLI	CCNNNNNNNGG	7 cut(s)	126, 217, 262, 593, 818, 1078, 1085
BseMI	GCAATG	1 cut(s)	420
BseNI	ACTGG	2 cut(s)	81, 615
BseRI	GAGGAG	1 cut(s)	910
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	943
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	3 cut(s)	281, 743, 1071
BshVI	ATCGAT	1 cut(s)	390
BsiEI	CGRYCG	1 cut(s)	126
BsiHKCI	CYCGRG	2 cut(s)	262, 448
BsiSI	CCGG	5 cut(s)	72, 126, 449, 594, 1079
BslFI	GGGAC	3 cut(s)	142, 891, 1030
BslI	CCNNNNNNNGG	7 cut(s)	126, 217, 262, 593, 818, 1078, 1085
BsmAI	GTCTC	2 cut(s)	71, 678
BsmBI	CGTCTC	1 cut(s)	678
BsmFI	GGGAC	3 cut(s)	142, 891, 1030
BsnI	GGCC	3 cut(s)	281, 743, 1071
Bso31I	GGTCTC	1 cut(s)	71
BsoBI	CYCGRG	2 cut(s)	262, 448
Bsp143I	GATC	8 cut(s)	53, 207, 312, 365, 397, 507, 747, 961
BspACI	CCGC	2 cut(s)	626, 1100
BspANI	GGCC	3 cut(s)	281, 743, 1071
BspDI	ATCGAT	1 cut(s)	390
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	833
BspPI	GGATC	3 cut(s)	61, 202, 373
BspTNI	GGTCTC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	420
BsrFI	RCCGGY	1 cut(s)	1078
BsrI	ACTGG	2 cut(s)	81, 615
BssAI	RCCGGY	1 cut(s)	1078
BssECI	CCNNGG	4 cut(s)	72, 261, 282, 448
BssMI	GATC	8 cut(s)	53, 207, 312, 365, 397, 507, 747, 961
BssSI	CACGAG	2 cut(s)	842, 974
Bst2BI	CACGAG	2 cut(s)	842, 974
Bst4CI	ACNGT	2 cut(s)	406, 858
Bst6I	CTCTTC	1 cut(s)	171
BstBAI	YACGTR	2 cut(s)	737, 1075
BstDEI	CTNAG	2 cut(s)	695, 965
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	3 cut(s)	329, 705, 727
BstHHI	GCGC	2 cut(s)	715, 878
BstKTI	GATC	8 cut(s)	56, 210, 315, 368, 400, 510, 750, 964
BstMAI	GTCTC	2 cut(s)	71, 678
BstMBI	GATC	8 cut(s)	53, 207, 312, 365, 397, 507, 747, 961
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	759
BstPAI	GACNNNNGTC	1 cut(s)	450
BstSCI	CCNGG	5 cut(s)	71, 125, 447, 448, 593
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	3 cut(s)	207, 365, 507
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	3 cut(s)	207, 365, 507
Bsu15I	ATCGAT	1 cut(s)	390
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	3 cut(s)	281, 743, 1071
BsuTUI	ATCGAT	1 cut(s)	390
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	3 cut(s)	329, 705, 727
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	2 cut(s)	715, 878
Cfr10I	RCCGGY	1 cut(s)	1078
Cfr13I	GGNCC	2 cut(s)	628, 1069
Cfr9I	CCCGGG	1 cut(s)	448
ClaI	ATCGAT	1 cut(s)	390
CseI	GACGC	1 cut(s)	695
Csp6I	GTAC	4 cut(s)	84, 538, 727, 1076
CviAII	CATG	6 cut(s)	191, 232, 334, 455, 706, 1085
CviQI	GTAC	4 cut(s)	84, 538, 727, 1076
DdeI	CTNAG	2 cut(s)	695, 965
DpnI	GATC	8 cut(s)	55, 209, 314, 367, 399, 509, 749, 963
DpnII	GATC	8 cut(s)	53, 207, 312, 365, 397, 507, 747, 961
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	171
EarI	CTCTTC	1 cut(s)	171
Eco147I	AGGCCT	1 cut(s)	743
Eco31I	GGTCTC	1 cut(s)	71
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	1 cut(s)	628
Eco72I	CACGTG	1 cut(s)	737
Eco88I	CYCGRG	2 cut(s)	262, 448
EcoRV	GATATC	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	6
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	6 cut(s)	194, 235, 337, 458, 709, 1088
FaqI	GGGAC	3 cut(s)	142, 891, 1030
FatI	CATG	6 cut(s)	190, 231, 333, 454, 705, 1084
FauNDI	CATATG	1 cut(s)	12
FbaI	TGATCA	2 cut(s)	397, 747
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	324, 1100
FokI	GGATG	3 cut(s)	316, 712, 734
Fsp4HI	GCNGC	2 cut(s)	324, 1100
FspBI	CTAG	4 cut(s)	63, 617, 635, 1029
GlaI	GCGC	2 cut(s)	714, 877
GluI	GCNGC	2 cut(s)	324, 1100
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	3 cut(s)	281, 743, 1071
HapII	CCGG	5 cut(s)	72, 126, 449, 594, 1079
HgaI	GACGC	1 cut(s)	695
HhaI	GCGC	2 cut(s)	715, 878
Hin1II	CATG	6 cut(s)	194, 235, 337, 458, 709, 1088
Hin6I	GCGC	2 cut(s)	713, 876
HinP1I	GCGC	2 cut(s)	713, 876
HincII	GTYRAC	2 cut(s)	270, 474
HindII	GTYRAC	2 cut(s)	270, 474
HinfI	GANTC	5 cut(s)	19, 470, 526, 883, 898
HpaII	CCGG	5 cut(s)	72, 126, 449, 594, 1079
HphI	GGTGA	1 cut(s)	1102
Hpy166II	GTNNAC	2 cut(s)	270, 474
Hpy188I	TCNGA	4 cut(s)	207, 296, 365, 961
Hpy188III	TCNNGA	6 cut(s)	23, 308, 432, 455, 518, 530
Hpy8I	GTNNAC	2 cut(s)	270, 474
Hpy99I	CGWCG	2 cut(s)	152, 155
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	2 cut(s)	406, 858
HpyCH4IV	ACGT	6 cut(s)	153, 272, 621, 736, 1053, 1074
HpyCH4V	TGCA	6 cut(s)	4, 38, 413, 466, 703, 924
HpyF10VI	GCNNNNNNNGC	1 cut(s)	759
HpyF3I	CTNAG	2 cut(s)	695, 965
HpySE526I	ACGT	6 cut(s)	153, 272, 621, 736, 1053, 1074
Hsp92II	CATG	6 cut(s)	194, 235, 337, 458, 709, 1088
HspAI	GCGC	2 cut(s)	713, 876
Ksp22I	TGATCA	2 cut(s)	397, 747
Kzo9I	GATC	8 cut(s)	53, 207, 312, 365, 397, 507, 747, 961
LmnI	GCTCC	2 cut(s)	597, 613
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	400, 690
MaeI	CTAG	4 cut(s)	63, 617, 635, 1029
MaeII	ACGT	6 cut(s)	153, 272, 621, 736, 1053, 1074
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	8 cut(s)	55, 209, 314, 367, 399, 509, 749, 963
MboI	GATC	8 cut(s)	53, 207, 312, 365, 397, 507, 747, 961
MboII	GAAGA	2 cut(s)	155, 158
MflI	RGATCY	3 cut(s)	207, 365, 507
MluCI	AATT	1 cut(s)	1022
MlyI	GAGTC	2 cut(s)	479, 907
MnlI	CCTC	8 cut(s)	100, 271, 494, 733, 770, 822, 831, 888
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	944
MseI	TTAA	4 cut(s)	108, 252, 678, 788
MslI	CAYNNNNRTG	1 cut(s)	720
MspI	CCGG	5 cut(s)	72, 126, 449, 594, 1079
MspR9I	CCNGG	5 cut(s)	73, 127, 449, 450, 595
MwoI	GCNNNNNNNGC	1 cut(s)	759
NciI	CCSGG	5 cut(s)	73, 127, 449, 450, 595
NdeI	CATATG	1 cut(s)	12
NdeII	GATC	8 cut(s)	53, 207, 312, 365, 397, 507, 747, 961
NlaIII	CATG	6 cut(s)	194, 235, 337, 458, 709, 1088
NlaIV	GGNNCC	1 cut(s)	833
NmuCI	GTSAC	1 cut(s)	115
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	743
PcsI	WCGNNNNNNNCGW	2 cut(s)	128, 269
PdmI	GAANNNNTTC	1 cut(s)	944
PfeI	GAWTC	3 cut(s)	19, 526, 883
PflMI	CCANNNNNTGG	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	593
PkrI	GCNGC	2 cut(s)	325, 1101
PleI	GAGTC	2 cut(s)	478, 906
PmaCI	CACGTG	1 cut(s)	737
PmlI	CACGTG	1 cut(s)	737
PpsI	GAGTC	2 cut(s)	478, 906
Ppu21I	YACGTR	2 cut(s)	737, 1075
PshAI	GACNNNNGTC	1 cut(s)	450
PspCI	CACGTG	1 cut(s)	737
PspN4I	GGNNCC	1 cut(s)	833
PspPI	GGNCC	2 cut(s)	628, 1069
PsuI	RGATCY	3 cut(s)	207, 365, 507
RsaI	GTAC	4 cut(s)	85, 539, 728, 1077
RsaNI	GTAC	4 cut(s)	84, 538, 727, 1076
RseI	CAYNNNNRTG	1 cut(s)	720
SalI	GTCGAC	1 cut(s)	472
SaqAI	TTAA	4 cut(s)	108, 252, 678, 788
SatI	GCNGC	2 cut(s)	324, 1100
Sau3AI	GATC	8 cut(s)	53, 207, 312, 365, 397, 507, 747, 961
Sau96I	GGNCC	2 cut(s)	628, 1069
ScaI	AGTACT	1 cut(s)	85
SchI	GAGTC	2 cut(s)	479, 907
ScrFI	CCNGG	5 cut(s)	73, 127, 449, 450, 595
SfaNI	GCATC	2 cut(s)	400, 690
SinI	GGWCC	1 cut(s)	628
SmaI	CCCGGG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	720
Sse9I	AATT	1 cut(s)	1022
SseBI	AGGCCT	1 cut(s)	743
SsiI	CCGC	2 cut(s)	626, 1100
SspMI	CTAG	4 cut(s)	63, 617, 635, 1029
StuI	AGGCCT	1 cut(s)	743
StyD4I	CCNGG	5 cut(s)	71, 125, 447, 448, 593
TaaI	ACNGT	2 cut(s)	406, 858
TaiI	ACGT	6 cut(s)	156, 275, 624, 739, 1056, 1077
TaqI	TCGA	3 cut(s)	22, 390, 473
TasI	AATT	1 cut(s)	1022
TatI	WGTACW	2 cut(s)	83, 726
TauI	GCSGC	1 cut(s)	1102
TfiI	GAWTC	3 cut(s)	19, 526, 883
Tru1I	TTAA	4 cut(s)	108, 252, 678, 788
Tru9I	TTAA	4 cut(s)	108, 252, 678, 788
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	32, 207, 318
TspMI	CCCGGG	1 cut(s)	448
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	628
XapI	RAATTY	1 cut(s)	1022
XmaI	CCCGGG	1 cut(s)	448
XmiI	GTMKAC	1 cut(s)	473
XmnI	GAANNNNTTC	1 cut(s)	944
XspI	CTAG	4 cut(s)	63, 617, 635, 1029
ZrmI	AGTACT	1 cut(s)	85
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.