RLG00000035112

Protein SENSITIVE TO PROTON RHIZOTOXICITY

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
61078851 .. 61080041
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035112

Sequence Viewer

Length: 1107 bp
ATGAATATTAATCCGGGGGCCACATCGAATTGTTTCCAAGGTATGTACTCCATGACGGGTCAAGATACAGTTTCGTCGTTTTCACTGGAACCAGACTCATCATCATCTAGAGCAGTACTACCCCAAGATCAGAATCACTCAACTTCTCTTCTCTACAGCCTCTCCGTCCTCAAAGAGAAAGTTCGTCAAGCCAAATCGCTGGTCGGCTTCCTTATTGCTCCTCCGGATCATCACCAAAGTCAACAGCAACAACAACTTCCAGAGTCAACGACCATGGGCGCCGTGGCGAGCATGAACAATGTTATCCAAGAAATCATTGTCACCGCGTCTTCGATGATGTTCACTTGCCAGCAGATGACCCTTGTTGCTCCAGGTAACGACACAAGATCTGAACCAAACTTCAGTATTAGTACTGCTGGTCGTAGTAACATTAGAGACTCTGCTTTCTATTCAACAAATGATCAAACACTCGATTGGTTTAGTACTGAGAACTACAACAACTGTCCCACTAGGGATGTGATCAGTAGGAGTCATGGACAGGTCGAAACGAAAGAGTTTTCTCAAAGAGTTGAAACCAACAATGCGTTACAGGTACAAAATCTTCCCCCAAAGAACTCGAGCTACGACATAATTGAGTTGGATGCTGCTGATTTGTTGGCCAAGTACACCCATTACTGCCAAGTTTGCGGGAAAGGGTTCAAGCGTGATGCAAACTTGAGAATGCACATGAGGGCTCATGGGGATGAATACAAGACTAGCATTGCCTTGAGCAACCCTTTGAAGAACAACAATAAGCAGAATAGTGCAGTGAACATACATGGATCGAGCGATGCTGAGTGTTCGGTGAAATTACCGAGGAAATATTCATGTCCTCAAGAAGGGTGCAGGTGGAATCAAAAGCACGCCAAATTCCAGCCTCTGAAGTCCATGATCTGCGTGAAAAATCACTACAAGAGGAGCCATTGTCCGAAGATGTGGCAATGCTCTTGCGGGACCACATTTTCTAGGAAAGATAAGCTTATGGGTCATGTTGCTTTGTTCGTTGGACACACACCAGTTATACTCAGTTCTAATTTGCCTATTAGGCATGGAAAAGCTGTGAACTAA

Protein Analysis

369

Amino Acids

41.02

Weight (kDa)

8.93

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_STOP2_3rd PF23115 288 - 322 3.9e-22 STOP2-like, C2H2-type zinc finger
zf-C2H2_STOP2_C PF23118 326 - 354 5e-17 STOP2-like, C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016106)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G22890
fragaria_vesca FvH4_3g30580
malus_domestica MD03G1128200.v1.1 MD11G1149000.v1.1
prunus_persica Prupe.6G113300_v2.0.a1
pyrus_communis pycom11g12190
rosa_chinensis RchiOBHm_Chr5g0056621
rosa_laevigata RLG00000035112
rosa_multiflora Rmu_sc0004101.1_g000040 Rmu_sc0008982.1_g000004
rosa_rugosa Rorug05G0301000
rosa_samantha Rh5BG383000 Rh5CG406200 Rh5DG395800
rosa_wichuraiana Rw5G034790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 876
Acc36I ACCTGC 1 cut(s) 876
AccB1I GGYRCC 1 cut(s) 278
AccII CGCG 1 cut(s) 326
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 3 cut(s) 324, 687, 990
AclWI GGATC 2 cut(s) 234, 829
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 1 cut(s) 908
AcuI CTGAAG 2 cut(s) 385, 941
AcyI GRCGYC 1 cut(s) 279
AfaI GTAC 6 cut(s) 47, 117, 412, 484, 594, 665
AfiI CCNNNNNNNGG 1 cut(s) 878
AgsI TTSAA 4 cut(s) 453, 572, 700, 781
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 3 cut(s) 621, 1018, 1097
AluI AGCT 3 cut(s) 621, 1018, 1097
Alw26I GTCTC 1 cut(s) 429
AlwI GGATC 2 cut(s) 234, 829
AlwNI CAGNNNCTG 1 cut(s) 919
Ama87I CYCGRG 1 cut(s) 616
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 2 cut(s) 18, 657
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 1 cut(s) 908
ArsI GACNNNNNNTTYG 2 cut(s) 186, 218
AseI ATTAAT 1 cut(s) 9
Asp700I GAANNNNTTC 2 cut(s) 32, 695
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 2 cut(s) 18, 993
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 3 cut(s) 224, 313, 856
AvaI CYCGRG 1 cut(s) 616
AvaII GGWCC 1 cut(s) 993
BalI TGGCCA 1 cut(s) 659
BanI GGYRCC 1 cut(s) 278
BanII GRGCYC 1 cut(s) 736
BarI GAAGNNNNNNTAC 2 cut(s) 585, 617
BbsI GAAGAC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 631
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 2 cut(s) 460, 519
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 1 cut(s) 429
BfaI CTAG 4 cut(s) 108, 510, 756, 1005
BfmI CTRYAG 1 cut(s) 154
BfoI RGCGCY 1 cut(s) 282
BfuAI ACCTGC 1 cut(s) 876
BglI GCCNNNNNGGC 1 cut(s) 1084
BglII AGATCT 1 cut(s) 386
BisI GCNGC 1 cut(s) 645
BlsI GCNGC 1 cut(s) 646
BmcAI AGTACT 3 cut(s) 117, 412, 484
Bme1390I CCNGG 2 cut(s) 15, 372
Bme18I GGWCC 1 cut(s) 993
BmeT110I CYCGRG 1 cut(s) 616
BmgT120I GGNCC 2 cut(s) 18, 993
BmiI GGNNCC 5 cut(s) 19, 90, 280, 959, 994
BmrFI CCNGG 2 cut(s) 15, 372
BmsI GCATC 3 cut(s) 631, 697, 820
BpiI GAAGAC 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 354
BpuEI CTTGAG 3 cut(s) 736, 787, 858
BpuMI CCSGG 1 cut(s) 15
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 5 cut(s) 14, 37, 273, 282, 854
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 4 cut(s) 146, 176, 949, 979
Bsc4I CCNNNNNNNGG 1 cut(s) 878
Bse1I ACTGG 2 cut(s) 90, 1055
Bse3DI GCAATG 2 cut(s) 759, 986
Bse8I GATNNNNATC 1 cut(s) 132
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 5 cut(s) 14, 37, 273, 282, 854
BseGI GGATG 3 cut(s) 520, 646, 748
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 878
BseMI GCAATG 2 cut(s) 759, 986
BseMII CTCAG 3 cut(s) 477, 825, 1078
BseNI ACTGG 2 cut(s) 90, 1055
BseRI GAGGAG 2 cut(s) 210, 970
BseXI GCAGC 1 cut(s) 631
BsgI GTGCAG 2 cut(s) 825, 904
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 2 cut(s) 20, 659
BshNI GGYRCC 1 cut(s) 278
BsiHKCI CYCGRG 1 cut(s) 616
BsiSI CCGG 2 cut(s) 14, 224
BslFI GGGAC 2 cut(s) 489, 1006
BslI CCNNNNNNNGG 1 cut(s) 878
BsmAI GTCTC 1 cut(s) 429
BsmFI GGGAC 2 cut(s) 489, 1006
BsmI GAATGC 1 cut(s) 726
BsnI GGCC 2 cut(s) 20, 659
BsoBI CYCGRG 1 cut(s) 616
Bsp1286I GDGCHC 1 cut(s) 736
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 7 cut(s) 127, 226, 386, 460, 519, 821, 930
Bsp19I CCATGG 1 cut(s) 273
BspACI CCGC 3 cut(s) 324, 687, 990
BspANI GGCC 2 cut(s) 20, 659
BspCNI CTCAG 3 cut(s) 478, 826, 1077
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 5 cut(s) 19, 90, 280, 959, 994
BspMI ACCTGC 1 cut(s) 876
BspPI GGATC 2 cut(s) 234, 829
BspT107I GGYRCC 1 cut(s) 278
BsrDI GCAATG 2 cut(s) 759, 986
BsrI ACTGG 2 cut(s) 90, 1055
BssECI CCNNGG 5 cut(s) 14, 37, 273, 282, 854
BssMI GATC 7 cut(s) 127, 226, 386, 460, 519, 821, 930
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 2 cut(s) 37, 273
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 70, 503
Bst6I CTCTTC 1 cut(s) 153
BstACI GRCGYC 1 cut(s) 279
BstC8I GCNNGC 3 cut(s) 289, 350, 903
BstDEI CTNAG 3 cut(s) 486, 834, 1064
BstDSI CCRYGG 2 cut(s) 273, 282
BstENI CCTNNNNNAGG 1 cut(s) 876
BstF5I GGATG 3 cut(s) 520, 646, 748
BstFNI CGCG 1 cut(s) 326
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 7 cut(s) 130, 229, 389, 463, 522, 824, 933
BstMAI GTCTC 1 cut(s) 429
BstMBI GATC 7 cut(s) 127, 226, 386, 460, 519, 821, 930
BstMWI GCNNNNNNNGC 2 cut(s) 684, 1084
BstNI CCWGG 1 cut(s) 372
BstSCI CCNGG 2 cut(s) 13, 370
BstSFI CTRYAG 1 cut(s) 154
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 631
BstV2I GAAGAC 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 386
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 386
BsuRI GGCC 2 cut(s) 20, 659
BtgI CCRYGG 2 cut(s) 273, 282
BtgZI GCGATG 1 cut(s) 843
BtsCI GGATG 3 cut(s) 520, 646, 748
BtsI GCAGTG 1 cut(s) 813
BtsIMutI CAGTG 2 cut(s) 83, 813
BveI ACCTGC 1 cut(s) 876
Cac8I GCNNGC 3 cut(s) 289, 350, 903
CaiI CAGNNNCTG 1 cut(s) 919
CfoI GCGC 1 cut(s) 281
Cfr13I GGNCC 2 cut(s) 18, 993
CseI GACGC 1 cut(s) 315
Csp6I GTAC 6 cut(s) 46, 116, 411, 483, 593, 664
CviQI GTAC 6 cut(s) 46, 116, 411, 483, 593, 664
DdeI CTNAG 3 cut(s) 486, 834, 1064
DinI GGCGCC 1 cut(s) 280
DpnI GATC 7 cut(s) 129, 228, 388, 462, 521, 823, 932
DpnII GATC 7 cut(s) 127, 226, 386, 460, 519, 821, 930
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 37, 273
Eco24I GRGCYC 1 cut(s) 736
Eco47I GGWCC 1 cut(s) 993
Eco57I CTGAAG 2 cut(s) 385, 941
Eco88I CYCGRG 1 cut(s) 616
EcoNI CCTNNNNNAGG 1 cut(s) 876
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 2 cut(s) 37, 273
EcoT38I GRGCYC 1 cut(s) 736
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
ErhI CCWWGG 2 cut(s) 37, 273
FalI AAGNNNNNCTT 2 cut(s) 1002, 1034
FaqI GGGAC 2 cut(s) 489, 1006
FauI CCCGC 2 cut(s) 680, 983
FbaI TGATCA 2 cut(s) 460, 519
Fnu4HI GCNGC 1 cut(s) 645
FokI GGATG 3 cut(s) 527, 653, 755
FriOI GRGCYC 1 cut(s) 736
Fsp4HI GCNGC 1 cut(s) 645
FspBI CTAG 4 cut(s) 108, 510, 756, 1005
GlaI GCGC 1 cut(s) 280
GluI GCNGC 1 cut(s) 645
GsuI CTGGAG 1 cut(s) 354
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 2 cut(s) 20, 659
HapII CCGG 2 cut(s) 14, 224
HgaI GACGC 1 cut(s) 315
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 279
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 2 cut(s) 242, 267
HindII GTYRAC 2 cut(s) 242, 267
HindIII AAGCTT 1 cut(s) 1016
HinfI GANTC 6 cut(s) 95, 133, 263, 437, 529, 892
HpaII CCGG 2 cut(s) 14, 224
HphI GGTGA 3 cut(s) 224, 313, 856
Hpy166II GTNNAC 6 cut(s) 242, 267, 342, 666, 811, 1102
Hpy188I TCNGA 4 cut(s) 132, 391, 921, 969
Hpy188III TCNNGA 5 cut(s) 62, 108, 224, 260, 875
Hpy8I GTNNAC 6 cut(s) 242, 267, 342, 666, 811, 1102
Hpy99I CGWCG 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 872
HpyCH4III ACNGT 2 cut(s) 70, 503
HpyCH4V TGCA 4 cut(s) 710, 724, 806, 885
HpyF10VI GCNNNNNNNGC 2 cut(s) 684, 1084
HpyF3I CTNAG 3 cut(s) 486, 834, 1064
Hsp92I GRCGYC 1 cut(s) 279
HspAI GCGC 1 cut(s) 279
KasI GGCGCC 1 cut(s) 278
Kpn2I TCCGGA 1 cut(s) 223
Ksp22I TGATCA 2 cut(s) 460, 519
Kzo9I GATC 7 cut(s) 127, 226, 386, 460, 519, 821, 930
LmnI GCTCC 3 cut(s) 223, 373, 957
Lsp1109I GCAGC 1 cut(s) 631
LweI GCATC 3 cut(s) 631, 697, 820
MaeI CTAG 4 cut(s) 108, 510, 756, 1005
MaeIII GTNAC 4 cut(s) 319, 374, 425, 585
MalI GATC 7 cut(s) 129, 228, 388, 462, 521, 823, 932
MboI GATC 7 cut(s) 127, 226, 386, 460, 519, 821, 930
MboII GAAGA 5 cut(s) 140, 321, 593, 793, 982
MflI RGATCY 1 cut(s) 386
MhlI GDGCHC 1 cut(s) 736
MlsI TGGCCA 1 cut(s) 659
MluCI AATT 5 cut(s) 28, 630, 848, 908, 1072
MluNI TGGCCA 1 cut(s) 659
Mly113I GGCGCC 1 cut(s) 279
MlyI GAGTC 4 cut(s) 89, 272, 431, 538
MmeI TCCRAC 2 cut(s) 618, 1024
MnlI CCTC 8 cut(s) 170, 179, 231, 723, 849, 882, 927, 948
Mox20I TGGCCA 1 cut(s) 659
MroI TCCGGA 1 cut(s) 223
MroXI GAANNNNTTC 2 cut(s) 32, 695
MscI TGGCCA 1 cut(s) 659
MseI TTAA 1 cut(s) 9
MslI CAYNNNNRTG 1 cut(s) 741
Msp20I TGGCCA 1 cut(s) 659
MspI CCGG 2 cut(s) 14, 224
MspR9I CCNGG 2 cut(s) 15, 372
Mva1269I GAATGC 1 cut(s) 726
MvaI CCWGG 1 cut(s) 372
MvnI CGCG 1 cut(s) 326
MwoI GCNNNNNNNGC 2 cut(s) 684, 1084
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 1 cut(s) 15
NcoI CCATGG 1 cut(s) 273
NdeII GATC 7 cut(s) 127, 226, 386, 460, 519, 821, 930
NlaIV GGNNCC 5 cut(s) 19, 90, 280, 959, 994
NmuCI GTSAC 1 cut(s) 319
PaeR7I CTCGAG 1 cut(s) 616
PaqCI CACCTGC 1 cut(s) 876
PctI GAATGC 1 cut(s) 726
PdmI GAANNNNTTC 2 cut(s) 32, 695
PfeI GAWTC 2 cut(s) 133, 892
PkrI GCNGC 1 cut(s) 646
PleI GAGTC 4 cut(s) 89, 271, 431, 537
PluTI GGCGCC 1 cut(s) 282
PpsI GAGTC 4 cut(s) 89, 271, 431, 537
PshBI ATTAAT 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 5 cut(s) 19, 90, 280, 959, 994
PspPI GGNCC 2 cut(s) 18, 993
PspXI VCTCGAGB 1 cut(s) 616
PsrI GAACNNNNNNTAC 2 cut(s) 605, 637
PstNI CAGNNNCTG 1 cut(s) 919
PsuI RGATCY 1 cut(s) 386
RsaI GTAC 6 cut(s) 47, 117, 412, 484, 594, 665
RsaNI GTAC 6 cut(s) 46, 116, 411, 483, 593, 664
RseI CAYNNNNRTG 1 cut(s) 741
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 1 cut(s) 645
Sau3AI GATC 7 cut(s) 127, 226, 386, 460, 519, 821, 930
Sau96I GGNCC 2 cut(s) 18, 993
ScaI AGTACT 3 cut(s) 117, 412, 484
SchI GAGTC 4 cut(s) 89, 272, 431, 538
ScrFI CCNGG 2 cut(s) 15, 372
SduI GDGCHC 1 cut(s) 736
SetI ASST 8 cut(s) 43, 376, 543, 594, 623, 890, 1020, 1099
SfaNI GCATC 3 cut(s) 631, 697, 820
SfcI CTRYAG 1 cut(s) 154
SfoI GGCGCC 1 cut(s) 280
Sfr274I CTCGAG 1 cut(s) 616
SinI GGWCC 1 cut(s) 993
SlaI CTCGAG 1 cut(s) 616
SmiMI CAYNNNNRTG 1 cut(s) 741
SmlI CTYRAG 4 cut(s) 616, 715, 766, 873
SmoI CTYRAG 4 cut(s) 616, 715, 766, 873
Sse9I AATT 5 cut(s) 28, 630, 848, 908, 1072
SsiI CCGC 3 cut(s) 324, 687, 990
SspDI GGCGCC 1 cut(s) 278
SspI AATATT 2 cut(s) 7, 863
SspMI CTAG 4 cut(s) 108, 510, 756, 1005
StyD4I CCNGG 2 cut(s) 13, 370
StyI CCWWGG 2 cut(s) 37, 273
TaaI ACNGT 2 cut(s) 70, 503
TaqI TCGA 6 cut(s) 26, 332, 471, 543, 617, 824
TasI AATT 5 cut(s) 28, 630, 848, 908, 1072
TatI WGTACW 5 cut(s) 45, 115, 410, 482, 663
TfiI GAWTC 2 cut(s) 133, 892
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TscAI CASTG 2 cut(s) 90, 813
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 4 cut(s) 17, 308, 759, 855
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 2 cut(s) 90, 813
VpaK11BI GGWCC 1 cut(s) 993
VspI ATTAAT 1 cut(s) 9
XagI CCTNNNNNAGG 1 cut(s) 876
XapI RAATTY 1 cut(s) 908
XbaI TCTAGA 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 616
XmnI GAANNNNTTC 2 cut(s) 32, 695
XspI CTAG 4 cut(s) 108, 510, 756, 1005
ZrmI AGTACT 3 cut(s) 117, 412, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.