Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0016106

Physical Location & Seq

Genomic Coordinates Forward (+)

14109134 .. 14110342

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1149000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTTACAACAGCAACAACACCATCTAGGGTTACAAATCTATGAAGATCCTCATCAGGTTTCTTCATTTTCACTCGAACCAAACTCCTCGTCATCATCGGTTCCTGACAATCACTCAACCTCTCTCCTCTGCAACTTCTCAGTCCTAAAAGAAAAGGTTCATCAAGCCAAATCACTAGTCAGCATCCTCATCTCTCCAAATCATCATCAAAGTCAACCCCAAGAGTCAGCCACCATCGCCCTAGCAAGCATGAGCAATATCATACAAGAAATCATCGTCACGGCTTCTTCTATGATGTTCACATGTCAACAGATGGCCCTTGTTTCCACTACTACTCCAGGTAACAACATCAACAACACTAATACTAGCACCACTACTACTGGTCAATGTCTTAGTAATCCTTCTGATCATCGTGAGCATAATCGCTTATCGGAAACAAACTTTGGTGGCGGTCATGGTAATAAAATTGATCAATCTGGTTTCTATTCTACTCGTGAACAAACTCTCGATTGGTTTAACGACAGCTACAATGATTGTACCACGGCAGATACGAGTACTAGGATTGTCAATCAAATTGGCAACAATGATAAGCATGTGCAAGGCAAGGAATTGCCTGTTTCTTCGAACTACGACATTATTGAGCTAGATGCTTCGGATTTGTTGGCTAAGTACACCCATTACTGCCAGGTTTGTGGCAAAGGGTTCAAGCGCGACGCAAATTTGAGAATGCACATGAGGGCTCATGGAGATGAGTACAAGACGATCGTTGCTCTAAGCAACCCCATGAAGAAAACTAACAACAATAATGATAGTGCAGGAGGCATAGATGGAAACATGGCATGTTCGACGAAATTGCCAAGAAAGTATTCGTGTCCGCAAGAAGGGTGTAGGTGGAACCAAAAGCATGCGAAATTCCAGCCTTTGAAATCGATGATTTGTGTGAAGAATCACTACAAGAGGAGCCATTGTCCCAAGATGTATGTGTGCAAGAGGTGCAACAGGAAGCAGTTCTCGGTGTTATCTGATCTACGCACCCATGAGAAGCACTGCGGCGATCTGAGATGGCAGTGTTCATGTGGGACAACATTTTCAAGGAAAGATAAGCTGATGGGGCACGTCGCGTTATTCACCGGGCATACGCCGGTTATGATCACTTCTTTGACAAGGATTGGGAAGGTTGATCAGCAAAGCCATGGATCACAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

403

Amino Acids

44.99

Weight (kDa)

8.78

Isoelectric Point (pI)

47.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	289 - 323	4.4e-22	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	327 - 351	6.5e-06	BIRD-IDD transcription factor, third C2HC zinc finger
zf-C2H2_STOP2_C	PF23118	354 - 382	6e-17	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22890
fragaria_vesca	FvH4_3g30580
malus_domestica	MD03G1128200.v1.1 MD11G1149000.v1.1
prunus_persica	Prupe.6G113300_v2.0.a1
pyrus_communis	pycom11g12190
rosa_chinensis	RchiOBHm_Chr5g0056621
rosa_laevigata	RLG00000035112
rosa_multiflora	Rmu_sc0004101.1_g000040 Rmu_sc0008982.1_g000004
rosa_rugosa	Rorug05G0301000
rosa_samantha	Rh5BG383000 Rh5CG406200 Rh5DG395800
rosa_wichuraiana	Rw5G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	711, 1121
AciI	CCGC	3 cut(s)	450, 875, 1050
AclWI	GGATC	2 cut(s)	41, 1204
AcsI	RAATTY	2 cut(s)	718, 911
AfaI	GTAC	4 cut(s)	538, 556, 671, 755
AfiI	CCNNNNNNNGG	1 cut(s)	881
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	706, 925, 1092
AhlI	ACTAGT	1 cut(s)	175
AjiI	CACGTC	1 cut(s)	1117
AjnI	CCWGG	2 cut(s)	337, 684
AjuI	GAANNNNNNNTTGG	4 cut(s)	426, 458, 850, 882
AluBI	AGCT	3 cut(s)	525, 643, 1105
AluI	AGCT	3 cut(s)	525, 643, 1105
AlwI	GGATC	2 cut(s)	41, 1204
AoxI	GGCC	1 cut(s)	315
ApoI	RAATTY	2 cut(s)	718, 911
ArsI	GACNNNNNNTTYG	4 cut(s)	74, 106, 162, 194
Asp700I	GAANNNNTTC	3 cut(s)	156, 865, 1007
AspLEI	GCGC	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	316
AsuC2I	CCSGG	1 cut(s)	1132
AsuHPI	GGTGA	1 cut(s)	1120
AsuII	TTCGAA	1 cut(s)	623
BaeGI	GKGCMC	1 cut(s)	1116
BanII	GRGCYC	1 cut(s)	742
BarI	GAAGNNNNNNTAC	2 cut(s)	935, 967
BauI	CACGAG	1 cut(s)	492
BccI	CCATC	6 cut(s)	30, 242, 307, 821, 1056, 1102
BceAI	ACGGC	2 cut(s)	297, 558
BcgI	CGANNNNNNTGC	2 cut(s)	835, 869
BciT130I	CCWGG	2 cut(s)	339, 686
BclI	TGATCA	4 cut(s)	406, 469, 1149, 1180
BcnI	CCSGG	1 cut(s)	1132
BcuI	ACTAGT	1 cut(s)	175
BfaI	CTAG	6 cut(s)	26, 176, 242, 366, 558, 644
BisI	GCNGC	1 cut(s)	1051
BlsI	GCNGC	1 cut(s)	1052
BmcAI	AGTACT	1 cut(s)	556
Bme1390I	CCNGG	3 cut(s)	339, 686, 1132
BmgBI	CACGTC	1 cut(s)	1117
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	3 cut(s)	102, 896, 962
BmrFI	CCNGG	3 cut(s)	339, 686, 1132
BmsI	GCATC	2 cut(s)	192, 637
BpmI	CTGGAG	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	623
BpuMI	CCSGG	1 cut(s)	1132
Bsa29I	ATCGAT	1 cut(s)	929
BsaBI	GATNNNNATC	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	540, 1192
BsaXI	ACNNNNNCTCC	4 cut(s)	319, 349, 952, 982
Bsc4I	CCNNNNNNNGG	1 cut(s)	881
Bse118I	RCCGGY	1 cut(s)	1141
Bse1I	ACTGG	1 cut(s)	385
Bse8I	GATNNNNATC	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	339, 686
BseCI	ATCGAT	1 cut(s)	929
BseDI	CCNNGG	2 cut(s)	540, 1192
BseGI	GGATG	1 cut(s)	183
BseJI	GATNNNNATC	1 cut(s)	51
BseLI	CCNNNNNNNGG	1 cut(s)	881
BseMII	CTCAG	2 cut(s)	153, 1049
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	3 cut(s)	76, 116, 973
BseSI	GKGCMC	1 cut(s)	1116
BsgI	GTGCAG	1 cut(s)	834
Bsh1236I	CGCG	2 cut(s)	711, 1121
Bsh1285I	CGRYCG	1 cut(s)	765
BshFI	GGCC	1 cut(s)	317
BshVI	ATCGAT	1 cut(s)	929
BsiEI	CGRYCG	1 cut(s)	765
BsiSI	CCGG	2 cut(s)	1131, 1142
BslFI	GGGAC	2 cut(s)	954, 1093
BslI	CCNNNNNNNGG	1 cut(s)	881
BsmFI	GGGAC	2 cut(s)	954, 1093
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	623
Bsp1286I	GDGCHC	2 cut(s)	742, 1116
Bsp143I	GATC	9 cut(s)	46, 406, 469, 762, 1024, 1054, 1149, 1180, 1196
Bsp19I	CCATGG	1 cut(s)	1192
BspACI	CCGC	3 cut(s)	450, 875, 1050
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	2 cut(s)	152, 1050
BspDI	ATCGAT	1 cut(s)	929
BspFNI	CGCG	2 cut(s)	711, 1121
BspLI	GGNNCC	3 cut(s)	102, 896, 962
BspPI	GGATC	2 cut(s)	41, 1204
BspT104I	TTCGAA	1 cut(s)	623
BsrFI	RCCGGY	1 cut(s)	1141
BsrI	ACTGG	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	1141
BssECI	CCNNGG	2 cut(s)	540, 1192
BssMI	GATC	9 cut(s)	46, 406, 469, 762, 1024, 1054, 1149, 1180, 1196
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	1192
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	339, 686
BstAPI	GCANNNNNTGC	1 cut(s)	993
BstBI	TTCGAA	1 cut(s)	623
BstC8I	GCNNGC	2 cut(s)	247, 906
BstDEI	CTNAG	5 cut(s)	139, 392, 666, 773, 1058
BstDSI	CCRYGG	2 cut(s)	540, 1192
BstF5I	GGATG	1 cut(s)	183
BstFNI	CGCG	2 cut(s)	711, 1121
BstHHI	GCGC	1 cut(s)	711
BstKTI	GATC	9 cut(s)	49, 409, 472, 765, 1027, 1057, 1152, 1183, 1199
BstMBI	GATC	9 cut(s)	46, 406, 469, 762, 1024, 1054, 1149, 1180, 1196
BstMCI	CGRYCG	1 cut(s)	765
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 993, 1111
BstNI	CCWGG	2 cut(s)	339, 686
BstNSI	RCATGY	4 cut(s)	306, 596, 843, 908
BstSCI	CCNGG	3 cut(s)	337, 684, 1130
BstSLI	GKGCMC	1 cut(s)	1116
BstUI	CGCG	2 cut(s)	711, 1121
BstX2I	RGATCY	1 cut(s)	46
BstXI	CCANNNNNNTGG	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	929
BsuRI	GGCC	1 cut(s)	317
BsuTUI	ATCGAT	1 cut(s)	929
BtgI	CCRYGG	2 cut(s)	540, 1192
BtgZI	GCGATG	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	1117
BtsCI	GGATG	1 cut(s)	183
BtsI	GCAGTG	2 cut(s)	1045, 1073
BtsIMutI	CAGTG	2 cut(s)	1045, 1073
Cac8I	GCNNGC	2 cut(s)	247, 906
CfoI	GCGC	1 cut(s)	711
Cfr10I	RCCGGY	1 cut(s)	1141
Cfr13I	GGNCC	1 cut(s)	316
ClaI	ATCGAT	1 cut(s)	929
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	4 cut(s)	537, 555, 670, 754
CviQI	GTAC	4 cut(s)	537, 555, 670, 754
DdeI	CTNAG	5 cut(s)	139, 392, 666, 773, 1058
DpnI	GATC	9 cut(s)	48, 408, 471, 764, 1026, 1056, 1151, 1182, 1198
DpnII	GATC	9 cut(s)	46, 406, 469, 762, 1024, 1054, 1149, 1180, 1196
Eco130I	CCWWGG	1 cut(s)	1192
Eco24I	GRGCYC	1 cut(s)	742
EcoRII	CCWGG	2 cut(s)	337, 684
EcoT14I	CCWWGG	1 cut(s)	1192
EcoT38I	GRGCYC	1 cut(s)	742
ErhI	CCWWGG	1 cut(s)	1192
FaqI	GGGAC	2 cut(s)	954, 1093
FbaI	TGATCA	4 cut(s)	406, 469, 1149, 1180
Fnu4HI	GCNGC	1 cut(s)	1051
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	1 cut(s)	742
Fsp4HI	GCNGC	1 cut(s)	1051
FspBI	CTAG	6 cut(s)	26, 176, 242, 366, 558, 644
GlaI	GCGC	1 cut(s)	710
GluI	GCNGC	1 cut(s)	1051
GsuI	CTGGAG	1 cut(s)	321
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	2 cut(s)	1131, 1142
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	1 cut(s)	711
Hin6I	GCGC	1 cut(s)	709
HinP1I	GCGC	1 cut(s)	709
HincII	GTYRAC	2 cut(s)	215, 308
HindII	GTYRAC	2 cut(s)	215, 308
HinfI	GANTC	2 cut(s)	224, 946
HpaII	CCGG	2 cut(s)	1131, 1142
HphI	GGTGA	1 cut(s)	1120
Hpy166II	GTNNAC	5 cut(s)	215, 300, 308, 497, 672
Hpy188I	TCNGA	5 cut(s)	406, 433, 655, 1024, 1059
Hpy188III	TCNNGA	4 cut(s)	104, 413, 494, 506
Hpy8I	GTNNAC	5 cut(s)	215, 300, 308, 497, 672
Hpy99I	CGWCG	3 cut(s)	716, 850, 1121
HpyAV	CCTTC	3 cut(s)	411, 875, 1168
HpyCH4IV	ACGT	1 cut(s)	1116
HpyCH4V	TGCA	6 cut(s)	132, 598, 730, 815, 987, 996
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 993, 1111
HpyF3I	CTNAG	5 cut(s)	139, 392, 666, 773, 1058
HpySE526I	ACGT	1 cut(s)	1116
HspAI	GCGC	1 cut(s)	709
Ksp22I	TGATCA	4 cut(s)	406, 469, 1149, 1180
Kzo9I	GATC	9 cut(s)	46, 406, 469, 762, 1024, 1054, 1149, 1180, 1196
LmnI	GCTCC	1 cut(s)	960
LweI	GCATC	2 cut(s)	192, 637
MaeI	CTAG	6 cut(s)	26, 176, 242, 366, 558, 644
MaeII	ACGT	1 cut(s)	1116
MaeIII	GTNAC	4 cut(s)	3, 30, 277, 341
MalI	GATC	9 cut(s)	48, 408, 471, 764, 1026, 1056, 1151, 1182, 1198
MboI	GATC	9 cut(s)	46, 406, 469, 762, 1024, 1054, 1149, 1180, 1196
MboII	GAAGA	6 cut(s)	54, 56, 279, 612, 799, 955
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	2 cut(s)	742, 1116
MluCI	AATT	6 cut(s)	465, 573, 608, 718, 851, 911
MlyI	GAGTC	1 cut(s)	233
MnlI	CCTC	9 cut(s)	60, 97, 130, 137, 197, 729, 812, 951, 984
MroXI	GAANNNNTTC	3 cut(s)	156, 865, 1007
MseI	TTAA	1 cut(s)	516
MslI	CAYNNNNRTG	1 cut(s)	747
MspI	CCGG	2 cut(s)	1131, 1142
MspR9I	CCNGG	3 cut(s)	339, 686, 1132
Mva1269I	GAATGC	1 cut(s)	732
MvaI	CCWGG	2 cut(s)	339, 686
MvnI	CGCG	2 cut(s)	711, 1121
MwoI	GCNNNNNNNGC	3 cut(s)	236, 993, 1111
NciI	CCSGG	1 cut(s)	1132
NcoI	CCATGG	1 cut(s)	1192
NdeII	GATC	9 cut(s)	46, 406, 469, 762, 1024, 1054, 1149, 1180, 1196
NlaIV	GGNNCC	3 cut(s)	102, 896, 962
NmuCI	GTSAC	1 cut(s)	277
NspI	RCATGY	4 cut(s)	306, 596, 843, 908
NspV	TTCGAA	1 cut(s)	623
PaeI	GCATGC	1 cut(s)	908
PciI	ACATGT	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	1 cut(s)	548
PctI	GAATGC	1 cut(s)	732
PdmI	GAANNNNTTC	3 cut(s)	156, 865, 1007
PfeI	GAWTC	1 cut(s)	946
PkrI	GCNGC	1 cut(s)	1052
Ple19I	CGATCG	1 cut(s)	765
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PscI	ACATGT	1 cut(s)	302
Psp6I	CCWGG	2 cut(s)	337, 684
PspGI	CCWGG	2 cut(s)	337, 684
PspN4I	GGNNCC	3 cut(s)	102, 896, 962
PspPI	GGNCC	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	46
PvuI	CGATCG	1 cut(s)	765
RsaI	GTAC	4 cut(s)	538, 556, 671, 755
RsaNI	GTAC	4 cut(s)	537, 555, 670, 754
RseI	CAYNNNNRTG	1 cut(s)	747
SaqAI	TTAA	1 cut(s)	516
SatI	GCNGC	1 cut(s)	1051
Sau3AI	GATC	9 cut(s)	46, 406, 469, 762, 1024, 1054, 1149, 1180, 1196
Sau96I	GGNCC	1 cut(s)	316
ScaI	AGTACT	1 cut(s)	556
SchI	GAGTC	1 cut(s)	233
ScrFI	CCNGG	3 cut(s)	339, 686, 1132
SduI	GDGCHC	2 cut(s)	742, 1116
SfaNI	GCATC	2 cut(s)	192, 637
SfuI	TTCGAA	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	747
SpeI	ACTAGT	1 cut(s)	175
SphI	GCATGC	1 cut(s)	908
Sse9I	AATT	6 cut(s)	465, 573, 608, 718, 851, 911
SsiI	CCGC	3 cut(s)	450, 875, 1050
SspMI	CTAG	6 cut(s)	26, 176, 242, 366, 558, 644
StyD4I	CCNGG	3 cut(s)	337, 684, 1130
StyI	CCWWGG	1 cut(s)	1192
TaiI	ACGT	1 cut(s)	1119
TaqI	TCGA	5 cut(s)	75, 507, 623, 845, 929
TasI	AATT	6 cut(s)	465, 573, 608, 718, 851, 911
TatI	WGTACW	3 cut(s)	554, 669, 753
TauI	GCSGC	1 cut(s)	1053
TfiI	GAWTC	1 cut(s)	946
Tru1I	TTAA	1 cut(s)	516
Tru9I	TTAA	1 cut(s)	516
TscAI	CASTG	2 cut(s)	1052, 1073
TseFI	GTSAC	1 cut(s)	277
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	5 cut(s)	54, 57, 149, 800, 1062
TspRI	CASTG	2 cut(s)	1052, 1073
XapI	RAATTY	2 cut(s)	718, 911
XceI	RCATGY	4 cut(s)	306, 596, 843, 908
XmnI	GAANNNNTTC	3 cut(s)	156, 865, 1007
XspI	CTAG	6 cut(s)	26, 176, 242, 366, 558, 644
ZrmI	AGTACT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.