Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0016106

Physical Location & Seq

Genomic Coordinates Forward (+)

12473628 .. 12474863

Gene Structure 1236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1128200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGATTTCTGAGGCTCCATCTGATTATCTCCAACCTATGTTACAACAACAGCACCACCAAGGGTTACAAAACTATGAAGATCCTCATCGGGTTTCATCTTTTGTACTTGAACCAAACTCCCCGACATCGTCGTCGGGCCCTGAGAATCACTCAACCTCTCTCCTCTACAACCTCTCAGTTCTCAAAGAAAAGGTTCATCAAGCCAAATCACTAGTCAGCGTCCTCATCTCTCCGGACCATCATCAAAGTCAACCCCATGAATCAACCACCATCGCCGTGAGCAATGTCATACAAGAAATCTTGGTCACGGCTTCTTCGATGATGTTCACTTGTCAACAGATGGCCCTTGGTTCCGCTACTACTCCAGGTAACAACATCAACATCACTACTACTAGCACCACTACTGCTCAAGGTCTTAGTGATCATCGTGATCATAATCGCACGTCGCAAACAAACTTTGGCATCGGTGATAGCAGTAAAATTGATCCATCGGCTTTCTATTCAACTCATGAACAAACAATCGATTGGTTTAGCGATAGCTTCAATGATTGTACCACTAGAGATACGAGTACTAGTATTGTCAATCATTGTAGCCACAATGATAGGTATGTGCAAGGCAAGGAATTGCCTGTTTCTTGGAAAAACTACGACATTATTGAGCTTGATGTTTCTGATTTGTTGGCTAAATACACCCATTACTGTCATGTTTGCGGCAAAGGGTTCAAGCGTGACGCGAATTTGAGAATGCACATGAGGGCTCATGGGGATGAGTACAAGACGAGCGTTGCTCTAAGCAACCCCTTGAAGAAAAATAACAACAATAACGATAGTGCAGGAGGCATAGATGGAAACACAGAGAGTTCGACGAAATTGCCAAGAAAGTATTCGTGTCCGCAAGAAGGGTGTAAATGGAATCAAAAGCATGCGAAGTTCCAGCCTTTGAAGTCTATGATTTGTGTGAAGAATCACTACAAGAGGAGCCATTGTCCCAAGATGTATGTGTGCAAGAGGTGCAACAGGAAGCAGTTCTCGGTGTTATCTGATCTACGCACCCATGAGAAGCACTGCGGCGATCTGAGATGGCAGTGTTCATGTGGTACAACATTTTCAAGGAAGGATAAGCTGATGGGGCATATCGCCTTGTTCACTGGGCATATGCCGGTTATGATAACTTCTTTGACAAGGAGTGGGAAGGTTGATCAGCAAAGCCATGGATCGCAGATGCAATTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

412

Amino Acids

46.14

Weight (kDa)

8.56

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	295 - 329	4.6e-22	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	333 - 357	6.4e-06	BIRD-IDD transcription factor, third C2HC zinc finger
zf-C2H2_STOP2_C	PF23118	360 - 388	2.7e-17	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22890
fragaria_vesca	FvH4_3g30580
malus_domestica	MD03G1128200.v1.1 MD11G1149000.v1.1
prunus_persica	Prupe.6G113300_v2.0.a1
pyrus_communis	pycom11g12190
rosa_chinensis	RchiOBHm_Chr5g0056621
rosa_laevigata	RLG00000035112
rosa_multiflora	Rmu_sc0004101.1_g000040 Rmu_sc0008982.1_g000004
rosa_rugosa	Rorug05G0301000
rosa_samantha	Rh5BG383000 Rh5CG406200 Rh5DG395800
rosa_wichuraiana	Rw5G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	130
AccII	CGCG	1 cut(s)	734
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	4 cut(s)	354, 711, 893, 1068
AclWI	GGATC	3 cut(s)	74, 479, 1222
AcsI	RAATTY	1 cut(s)	736
AfaI	GTAC	5 cut(s)	105, 553, 571, 773, 1099
AfiI	CCNNNNNNNGG	1 cut(s)	899
AgsI	TTSAA	7 cut(s)	110, 504, 544, 724, 805, 943, 1110
AhlI	ACTAGT	2 cut(s)	211, 572
AjiI	CACGTC	1 cut(s)	444
AjnI	CCWGG	1 cut(s)	364
AjuI	GAANNNNNNNTTGG	2 cut(s)	868, 900
AluBI	AGCT	3 cut(s)	540, 661, 1123
AluI	AGCT	3 cut(s)	540, 661, 1123
AlwI	GGATC	3 cut(s)	74, 479, 1222
Aor13HI	TCCGGA	1 cut(s)	232
AoxI	GGCC	2 cut(s)	136, 342
ApaI	GGGCCC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	736
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
Asp700I	GAANNNNTTC	3 cut(s)	192, 883, 1025
AspS9I	GGNCC	4 cut(s)	136, 137, 235, 343
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	235
BaeGI	GKGCMC	1 cut(s)	140
BanII	GRGCYC	2 cut(s)	140, 760
BarI	GAAGNNNNNNTAC	2 cut(s)	953, 985
BccI	CCATC	8 cut(s)	25, 246, 278, 334, 496, 839, 1074, 1120
BceAI	ACGGC	2 cut(s)	260, 324
BcgI	CGANNNNNNTGC	2 cut(s)	853, 887
BciT130I	CCWGG	1 cut(s)	366
BclI	TGATCA	3 cut(s)	421, 430, 1198
BcuI	ACTAGT	2 cut(s)	211, 572
BfaI	CTAG	4 cut(s)	212, 393, 558, 573
BisI	GCNGC	2 cut(s)	712, 1069
BlsI	GCNGC	2 cut(s)	713, 1070
BmcAI	AGTACT	1 cut(s)	571
Bme1390I	CCNGG	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	444
BmgT120I	GGNCC	4 cut(s)	136, 137, 235, 343
BmiI	GGNNCC	4 cut(s)	15, 138, 352, 980
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	1158
BmsI	GCATC	2 cut(s)	471, 1212
BmuI	ACTGGG	1 cut(s)	1158
BplI	GAGNNNNNCTC	4 cut(s)	134, 166, 772, 804
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	393
Bsa29I	ATCGAT	1 cut(s)	522
BsaBI	GATNNNNATC	2 cut(s)	84, 435
BsaJI	CCNNGG	3 cut(s)	58, 346, 1210
BsaWI	WCCGGW	1 cut(s)	232
BsaXI	ACNNNNNCTCC	2 cut(s)	970, 1000
Bsc4I	CCNNNNNNNGG	1 cut(s)	899
Bse118I	RCCGGY	1 cut(s)	1159
Bse1I	ACTGG	1 cut(s)	1153
Bse3DI	GCAATG	1 cut(s)	289
Bse8I	GATNNNNATC	2 cut(s)	84, 435
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	366
BseCI	ATCGAT	1 cut(s)	522
BseDI	CCNNGG	3 cut(s)	58, 346, 1210
BseGI	GGATG	1 cut(s)	772
BseJI	GATNNNNATC	2 cut(s)	84, 435
BseLI	CCNNNNNNNGG	1 cut(s)	899
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	3 cut(s)	132, 189, 1067
BseNI	ACTGG	1 cut(s)	1153
BseRI	GAGGAG	2 cut(s)	152, 991
BseSI	GKGCMC	1 cut(s)	140
BsgI	GTGCAG	1 cut(s)	852
Bsh1236I	CGCG	1 cut(s)	734
BshFI	GGCC	2 cut(s)	138, 344
BshVI	ATCGAT	1 cut(s)	522
BsiSI	CCGG	2 cut(s)	233, 1160
BslFI	GGGAC	1 cut(s)	972
BslI	CCNNNNNNNGG	1 cut(s)	899
BsmFI	GGGAC	1 cut(s)	972
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	2 cut(s)	138, 344
Bsp120I	GGGCCC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	140, 760
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	8 cut(s)	79, 421, 430, 484, 1042, 1072, 1198, 1214
Bsp19I	CCATGG	1 cut(s)	1210
BspACI	CCGC	4 cut(s)	354, 711, 893, 1068
BspANI	GGCC	2 cut(s)	138, 344
BspCNI	CTCAG	3 cut(s)	133, 188, 1068
BspDI	ATCGAT	1 cut(s)	522
BspEI	TCCGGA	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	734
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	4 cut(s)	15, 138, 352, 980
BspPI	GGATC	3 cut(s)	74, 479, 1222
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	1159
BsrI	ACTGG	1 cut(s)	1153
BssAI	RCCGGY	1 cut(s)	1159
BssECI	CCNNGG	3 cut(s)	58, 346, 1210
BssMI	GATC	8 cut(s)	79, 421, 430, 484, 1042, 1072, 1198, 1214
BssT1I	CCWWGG	3 cut(s)	58, 346, 1210
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	1 cut(s)	701
BstAPI	GCANNNNNTGC	1 cut(s)	1011
BstC8I	GCNNGC	1 cut(s)	924
BstDEI	CTNAG	6 cut(s)	9, 141, 175, 416, 791, 1076
BstDSI	CCRYGG	1 cut(s)	1210
BstF5I	GGATG	1 cut(s)	772
BstFNI	CGCG	1 cut(s)	734
BstKTI	GATC	8 cut(s)	82, 424, 433, 487, 1045, 1075, 1201, 1217
BstMBI	GATC	8 cut(s)	79, 421, 430, 484, 1042, 1072, 1198, 1214
BstMWI	GCNNNNNNNGC	2 cut(s)	1011, 1129
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	926
BstSCI	CCNGG	1 cut(s)	364
BstSLI	GKGCMC	1 cut(s)	140
BstUI	CGCG	1 cut(s)	734
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
Bsu15I	ATCGAT	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	138, 344
BsuTUI	ATCGAT	1 cut(s)	522
BtgI	CCRYGG	1 cut(s)	1210
BtgZI	GCGATG	1 cut(s)	256
BtrI	CACGTC	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	772
BtsI	GCAGTG	2 cut(s)	1063, 1091
BtsIMutI	CAGTG	3 cut(s)	1063, 1091, 1146
Cac8I	GCNNGC	1 cut(s)	924
CciI	TCATGA	1 cut(s)	508
Cfr10I	RCCGGY	1 cut(s)	1159
Cfr13I	GGNCC	4 cut(s)	136, 137, 235, 343
ClaI	ATCGAT	1 cut(s)	522
CseI	GACGC	2 cut(s)	208, 740
Csp6I	GTAC	5 cut(s)	104, 552, 570, 772, 1098
CviAII	CATG	9 cut(s)	257, 509, 704, 751, 761, 923, 1055, 1092, 1211
CviQI	GTAC	5 cut(s)	104, 552, 570, 772, 1098
DdeI	CTNAG	6 cut(s)	9, 141, 175, 416, 791, 1076
DpnI	GATC	8 cut(s)	81, 423, 432, 486, 1044, 1074, 1200, 1216
DpnII	GATC	8 cut(s)	79, 421, 430, 484, 1042, 1072, 1198, 1214
DrdI	GACNNNNNNGTC	1 cut(s)	130
DseDI	GACNNNNNNGTC	1 cut(s)	130
Eco130I	CCWWGG	3 cut(s)	58, 346, 1210
Eco24I	GRGCYC	2 cut(s)	140, 760
Eco47I	GGWCC	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	3 cut(s)	58, 346, 1210
EcoT38I	GRGCYC	2 cut(s)	140, 760
ErhI	CCWWGG	3 cut(s)	58, 346, 1210
FaeI	CATG	9 cut(s)	260, 512, 707, 754, 764, 926, 1058, 1095, 1214
FaqI	GGGAC	1 cut(s)	972
FatI	CATG	9 cut(s)	256, 508, 703, 750, 760, 922, 1054, 1091, 1210
FauNDI	CATATG	1 cut(s)	1155
FbaI	TGATCA	3 cut(s)	421, 430, 1198
Fnu4HI	GCNGC	2 cut(s)	712, 1069
FokI	GGATG	1 cut(s)	779
FriOI	GRGCYC	2 cut(s)	140, 760
Fsp4HI	GCNGC	2 cut(s)	712, 1069
FspBI	CTAG	4 cut(s)	212, 393, 558, 573
GluI	GCNGC	2 cut(s)	712, 1069
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	2 cut(s)	138, 344
HapII	CCGG	2 cut(s)	233, 1160
HgaI	GACGC	2 cut(s)	208, 740
Hin1II	CATG	9 cut(s)	260, 512, 707, 754, 764, 926, 1058, 1095, 1214
HincII	GTYRAC	2 cut(s)	251, 335
HindII	GTYRAC	2 cut(s)	251, 335
HinfI	GANTC	4 cut(s)	145, 260, 913, 964
HpaII	CCGG	2 cut(s)	233, 1160
HphI	GGTGA	1 cut(s)	479
Hpy166II	GTNNAC	4 cut(s)	251, 327, 335, 1146
Hpy188I	TCNGA	5 cut(s)	10, 22, 673, 1042, 1077
Hpy188III	TCNNGA	3 cut(s)	233, 428, 509
Hpy8I	GTNNAC	4 cut(s)	251, 327, 335, 1146
Hpy99I	CGWCG	4 cut(s)	133, 136, 448, 868
HpyAV	CCTTC	3 cut(s)	893, 1108, 1186
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	6 cut(s)	613, 748, 833, 1005, 1014, 1225
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1011, 1129
HpyF3I	CTNAG	6 cut(s)	9, 141, 175, 416, 791, 1076
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	9 cut(s)	260, 512, 707, 754, 764, 926, 1058, 1095, 1214
Kpn2I	TCCGGA	1 cut(s)	232
Ksp22I	TGATCA	3 cut(s)	421, 430, 1198
Kzo9I	GATC	8 cut(s)	79, 421, 430, 484, 1042, 1072, 1198, 1214
LmnI	GCTCC	2 cut(s)	19, 978
LweI	GCATC	2 cut(s)	471, 1212
MaeI	CTAG	4 cut(s)	212, 393, 558, 573
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	5 cut(s)	39, 63, 304, 368, 728
MalI	GATC	8 cut(s)	81, 423, 432, 486, 1044, 1074, 1200, 1216
MboI	GATC	8 cut(s)	79, 421, 430, 484, 1042, 1072, 1198, 1214
MboII	GAAGA	4 cut(s)	89, 306, 817, 973
MfeI	CAATTG	1 cut(s)	1226
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	2 cut(s)	140, 760
MluCI	AATT	5 cut(s)	480, 623, 736, 869, 1226
MmeI	TCCRAC	1 cut(s)	55
MroI	TCCGGA	1 cut(s)	232
MroXI	GAANNNNTTC	3 cut(s)	192, 883, 1025
MslI	CAYNNNNRTG	2 cut(s)	275, 765
MspI	CCGG	2 cut(s)	233, 1160
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	1226
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	2 cut(s)	1011, 1129
NcoI	CCATGG	1 cut(s)	1210
NdeI	CATATG	1 cut(s)	1155
NdeII	GATC	8 cut(s)	79, 421, 430, 484, 1042, 1072, 1198, 1214
NlaIII	CATG	9 cut(s)	260, 512, 707, 754, 764, 926, 1058, 1095, 1214
NlaIV	GGNNCC	4 cut(s)	15, 138, 352, 980
NmuCI	GTSAC	2 cut(s)	304, 728
NspI	RCATGY	1 cut(s)	926
PaeI	GCATGC	1 cut(s)	926
PagI	TCATGA	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	1 cut(s)	314
PctI	GAATGC	1 cut(s)	750
PdmI	GAANNNNTTC	3 cut(s)	192, 883, 1025
PfeI	GAWTC	4 cut(s)	145, 260, 913, 964
PflFI	GACNNNGTC	1 cut(s)	127
PkrI	GCNGC	2 cut(s)	713, 1070
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	4 cut(s)	15, 138, 352, 980
PspOMI	GGGCCC	1 cut(s)	136
PspPI	GGNCC	4 cut(s)	136, 137, 235, 343
PsuI	RGATCY	1 cut(s)	79
PsyI	GACNNNGTC	1 cut(s)	127
RsaI	GTAC	5 cut(s)	105, 553, 571, 773, 1099
RsaNI	GTAC	5 cut(s)	104, 552, 570, 772, 1098
RseI	CAYNNNNRTG	2 cut(s)	275, 765
SatI	GCNGC	2 cut(s)	712, 1069
Sau3AI	GATC	8 cut(s)	79, 421, 430, 484, 1042, 1072, 1198, 1214
Sau96I	GGNCC	4 cut(s)	136, 137, 235, 343
ScaI	AGTACT	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	2 cut(s)	140, 760
SfaNI	GCATC	2 cut(s)	471, 1212
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	2 cut(s)	275, 765
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
SpeI	ACTAGT	2 cut(s)	211, 572
SphI	GCATGC	1 cut(s)	926
Sse9I	AATT	5 cut(s)	480, 623, 736, 869, 1226
SsiI	CCGC	4 cut(s)	354, 711, 893, 1068
SspMI	CTAG	4 cut(s)	212, 393, 558, 573
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	3 cut(s)	58, 346, 1210
TaaI	ACNGT	1 cut(s)	701
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	3 cut(s)	317, 522, 863
TasI	AATT	5 cut(s)	480, 623, 736, 869, 1226
TatI	WGTACW	3 cut(s)	103, 569, 771
TauI	GCSGC	2 cut(s)	714, 1071
TfiI	GAWTC	4 cut(s)	145, 260, 913, 964
TscAI	CASTG	3 cut(s)	1070, 1091, 1153
TseFI	GTSAC	2 cut(s)	304, 728
Tsp45I	GTSAC	2 cut(s)	304, 728
TspDTI	ATGAA	6 cut(s)	84, 90, 185, 273, 525, 1080
TspRI	CASTG	3 cut(s)	1070, 1091, 1153
Tth111I	GACNNNGTC	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	736
XceI	RCATGY	1 cut(s)	926
XmnI	GAANNNNTTC	3 cut(s)	192, 883, 1025
XspI	CTAG	4 cut(s)	212, 393, 558, 573
ZrmI	AGTACT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.