Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004101.1

Orthogroup ID

OG0016106

Physical Location & Seq

Genomic Coordinates Forward (+)

190026 .. 191174

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004101.1_g000040.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgtactccatgacgggtcaagatacagtttcgtcgttttcactcgaaccagactcatcatcatctggggcagtactaccccaagatcagaatcactcgacttctcttctctacagcctctccgtcctcaaagagaaagttcgtcaagccaaatcgctggtcggcgtccttattgctcctccggatcatcaccaaagtcaacaacaacaacaacttccagagtcaacgaccatgggcgccgtggcgagcatgaacaatgttatccaagaaatcatcgtcaccgcgtcttcgatgatgttcacttgccaacagatggcccttgttgctccaggtaacgacacaagatctgaaccaaactttagtattagtactgctggtcgtagtaacattagagacgctactttctatccaacaaatgatcaaacactcgattggtttagtactgagaactacaacaactgtcccactagggatgtgatcagtaggagtcatggacaggtcaaaacgaaagagtttcctcaaagagttgaaaccaacaatgcgttacaggtacaaaatcttcccccaaagaactcgagctacgacataattgagttggatgctgctgatttgttggccaagtacactcattactgccaagtttgcgggaaagggttcaagcgtgatgcgaacttgagaatgcacatgagggctcacggggatgaatacaagactagcattgccttgagcaaccctttgaagaacaacaataagcagaatagtgcagtgaacatacatggatcgagcgatgctgagtgttcggtgaaattaccgaggaaatattcatgtcctcaagaagggtgcaggtggaatcaaaagcacgccaaattccagcctctgaagtccatgatctgcgtgaaaaatcactacaagaggagccattgtccgaagatgtatgtatgtaagaggtgcaatcggaagcagttttctgtgttatctgatctaagaacgcatgaaaagcactgtggggatctcaggtggcaatgctcttgcggaaccacgttttctaggaaagataagcttatgggtcatgttgctttgttcgttggacacacaccagttattctcagttctaatttgcctattaggcatggaaaagctgtgaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

382

Amino Acids

42.82

Weight (kDa)

9.16

Isoelectric Point (pI)

54.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22890
fragaria_vesca	FvH4_3g30580
malus_domestica	MD03G1128200.v1.1 MD11G1149000.v1.1
prunus_persica	Prupe.6G113300_v2.0.a1
pyrus_communis	pycom11g12190
rosa_chinensis	RchiOBHm_Chr5g0056621
rosa_laevigata	RLG00000035112
rosa_multiflora	Rmu_sc0004101.1_g000040 Rmu_sc0008982.1_g000004
rosa_rugosa	Rorug05G0301000
rosa_samantha	Rh5BG383000 Rh5CG406200 Rh5DG395800
rosa_wichuraiana	Rw5G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	834
Acc36I	ACCTGC	1 cut(s)	834
AccB1I	GGYRCC	1 cut(s)	236
AccB7I	CCANNNNNTGG	1 cut(s)	313
AccII	CGCG	1 cut(s)	284
AccIII	TCCGGA	1 cut(s)	181
AciI	CCGC	3 cut(s)	282, 645, 1032
AclWI	GGATC	3 cut(s)	192, 787, 1017
AcoI	YGGCCR	1 cut(s)	615
AcsI	RAATTY	1 cut(s)	866
AcuI	CTGAAG	1 cut(s)	899
AcyI	GRCGYC	2 cut(s)	165, 237
AfaI	GTAC	6 cut(s)	5, 75, 370, 442, 552, 623
AfiI	CCNNNNNNNGG	2 cut(s)	313, 836
AgsI	TTSAA	3 cut(s)	530, 658, 739
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	3 cut(s)	579, 1060, 1139
AluI	AGCT	3 cut(s)	579, 1060, 1139
Alw26I	GTCTC	1 cut(s)	387
AlwI	GGATC	3 cut(s)	192, 787, 1017
AlwNI	CAGNNNCTG	1 cut(s)	877
Ama87I	CYCGRG	1 cut(s)	574
Aor13HI	TCCGGA	1 cut(s)	181
AoxI	GGCC	2 cut(s)	315, 615
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	866
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
Asp700I	GAANNNNTTC	1 cut(s)	653
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	316
AsuHPI	GGTGA	3 cut(s)	182, 271, 814
AvaI	CYCGRG	1 cut(s)	574
BalI	TGGCCA	1 cut(s)	617
BanI	GGYRCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	694
BarI	GAAGNNNNNNTAC	2 cut(s)	543, 575
BbsI	GAAGAC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	1 cut(s)	307
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	1 cut(s)	330
BclI	TGATCA	2 cut(s)	418, 477
BcoDI	GTCTC	1 cut(s)	387
BfaI	CTAG	3 cut(s)	468, 714, 1047
BfmI	CTRYAG	1 cut(s)	112
BfoI	RGCGCY	1 cut(s)	240
BfuAI	ACCTGC	1 cut(s)	834
BglI	GCCNNNNNGGC	1 cut(s)	1126
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	1 cut(s)	603
BlsI	GCNGC	1 cut(s)	604
BmcAI	AGTACT	3 cut(s)	75, 370, 442
Bme1390I	CCNGG	1 cut(s)	330
BmeT110I	CYCGRG	1 cut(s)	574
BmgT120I	GGNCC	1 cut(s)	316
BmiI	GGNNCC	3 cut(s)	238, 917, 1036
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	3 cut(s)	589, 655, 778
BpiI	GAAGAC	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	312
BpuEI	CTTGAG	3 cut(s)	694, 745, 816
BsaBI	GATNNNNATC	1 cut(s)	90
BsaHI	GRCGYC	2 cut(s)	165, 237
BsaJI	CCNNGG	3 cut(s)	231, 240, 812
BsaWI	WCCGGW	1 cut(s)	181
BsaXI	ACNNNNNCTCC	4 cut(s)	104, 134, 907, 937
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 836
Bse1I	ACTGG	1 cut(s)	1097
Bse3DI	GCAATG	2 cut(s)	717, 1028
Bse8I	GATNNNNATC	1 cut(s)	90
BseAI	TCCGGA	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	3 cut(s)	231, 240, 812
BseGI	GGATG	3 cut(s)	478, 604, 706
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	2 cut(s)	313, 836
BseMI	GCAATG	2 cut(s)	717, 1028
BseMII	CTCAG	4 cut(s)	435, 783, 1027, 1120
BseNI	ACTGG	1 cut(s)	1097
BseRI	GAGGAG	2 cut(s)	168, 928
BseXI	GCAGC	1 cut(s)	589
BsgI	GTGCAG	2 cut(s)	783, 862
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	2 cut(s)	317, 617
BshNI	GGYRCC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	574
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	2 cut(s)	313, 836
BsmAI	GTCTC	1 cut(s)	387
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	447
BsmI	GAATGC	1 cut(s)	684
BsnI	GGCC	2 cut(s)	317, 617
BsoBI	CYCGRG	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	694
Bsp13I	TCCGGA	1 cut(s)	181
Bsp143I	GATC	9 cut(s)	85, 184, 344, 418, 477, 779, 888, 979, 1009
Bsp19I	CCATGG	1 cut(s)	231
BspACI	CCGC	3 cut(s)	282, 645, 1032
BspANI	GGCC	2 cut(s)	317, 617
BspCNI	CTCAG	4 cut(s)	436, 784, 1026, 1119
BspEI	TCCGGA	1 cut(s)	181
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	3 cut(s)	238, 917, 1036
BspMI	ACCTGC	1 cut(s)	834
BspPI	GGATC	3 cut(s)	192, 787, 1017
BspT107I	GGYRCC	1 cut(s)	236
BsrDI	GCAATG	2 cut(s)	717, 1028
BsrI	ACTGG	1 cut(s)	1097
BssECI	CCNNGG	3 cut(s)	231, 240, 812
BssMI	GATC	9 cut(s)	85, 184, 344, 418, 477, 779, 888, 979, 1009
BssNI	GRCGYC	2 cut(s)	165, 237
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	28, 461, 1004
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	2 cut(s)	165, 237
BstC8I	GCNNGC	2 cut(s)	247, 861
BstDEI	CTNAG	5 cut(s)	444, 792, 983, 1013, 1106
BstDSI	CCRYGG	2 cut(s)	231, 240
BstENI	CCTNNNNNAGG	1 cut(s)	834
BstF5I	GGATG	3 cut(s)	478, 604, 706
BstFNI	CGCG	1 cut(s)	284
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	9 cut(s)	88, 187, 347, 421, 480, 782, 891, 982, 1012
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	9 cut(s)	85, 184, 344, 418, 477, 779, 888, 979, 1009
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 642, 997, 1126
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	589
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	2 cut(s)	344, 1009
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	344, 1009
BsuRI	GGCC	2 cut(s)	317, 617
BtgI	CCRYGG	2 cut(s)	231, 240
BtgZI	GCGATG	1 cut(s)	801
BtsCI	GGATG	3 cut(s)	478, 604, 706
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	2 cut(s)	771, 1000
BveI	ACCTGC	1 cut(s)	834
Cac8I	GCNNGC	2 cut(s)	247, 861
CaiI	CAGNNNCTG	1 cut(s)	877
CfoI	GCGC	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	316
CseI	GACGC	3 cut(s)	154, 273, 404
Csp6I	GTAC	6 cut(s)	4, 74, 369, 441, 551, 622
CviQI	GTAC	6 cut(s)	4, 74, 369, 441, 551, 622
DdeI	CTNAG	5 cut(s)	444, 792, 983, 1013, 1106
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	9 cut(s)	87, 186, 346, 420, 479, 781, 890, 981, 1011
DpnII	GATC	9 cut(s)	85, 184, 344, 418, 477, 779, 888, 979, 1009
EaeI	YGGCCR	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco130I	CCWWGG	1 cut(s)	231
Eco24I	GRGCYC	1 cut(s)	694
Eco57I	CTGAAG	1 cut(s)	899
Eco88I	CYCGRG	1 cut(s)	574
EcoNI	CCTNNNNNAGG	1 cut(s)	834
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	231
EcoT38I	GRGCYC	1 cut(s)	694
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	387
FalI	AAGNNNNNCTT	2 cut(s)	1044, 1076
FaqI	GGGAC	1 cut(s)	447
FauI	CCCGC	1 cut(s)	638
FbaI	TGATCA	2 cut(s)	418, 477
Fnu4HI	GCNGC	1 cut(s)	603
FokI	GGATG	3 cut(s)	485, 611, 713
FriOI	GRGCYC	1 cut(s)	694
Fsp4HI	GCNGC	1 cut(s)	603
FspBI	CTAG	3 cut(s)	468, 714, 1047
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	1 cut(s)	603
GsuI	CTGGAG	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	317, 617
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	3 cut(s)	154, 273, 404
HhaI	GCGC	1 cut(s)	239
Hin1I	GRCGYC	2 cut(s)	165, 237
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HincII	GTYRAC	2 cut(s)	200, 225
HindII	GTYRAC	2 cut(s)	200, 225
HindIII	AAGCTT	1 cut(s)	1058
HinfI	GANTC	5 cut(s)	53, 91, 221, 487, 850
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	3 cut(s)	182, 271, 814
Hpy166II	GTNNAC	6 cut(s)	200, 225, 300, 624, 769, 1144
Hpy188I	TCNGA	6 cut(s)	90, 349, 879, 927, 957, 979
Hpy188III	TCNNGA	4 cut(s)	20, 182, 218, 833
Hpy8I	GTNNAC	6 cut(s)	200, 225, 300, 624, 769, 1144
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	830
HpyCH4III	ACNGT	3 cut(s)	28, 461, 1004
HpyCH4IV	ACGT	1 cut(s)	1040
HpyCH4V	TGCA	4 cut(s)	682, 764, 843, 951
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 642, 997, 1126
HpyF3I	CTNAG	5 cut(s)	444, 792, 983, 1013, 1106
HpySE526I	ACGT	1 cut(s)	1040
Hsp92I	GRCGYC	2 cut(s)	165, 237
HspAI	GCGC	1 cut(s)	237
KasI	GGCGCC	1 cut(s)	236
Kpn2I	TCCGGA	1 cut(s)	181
Ksp22I	TGATCA	2 cut(s)	418, 477
Kzo9I	GATC	9 cut(s)	85, 184, 344, 418, 477, 779, 888, 979, 1009
LmnI	GCTCC	3 cut(s)	181, 331, 915
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	3 cut(s)	589, 655, 778
MaeI	CTAG	3 cut(s)	468, 714, 1047
MaeII	ACGT	1 cut(s)	1040
MaeIII	GTNAC	4 cut(s)	277, 332, 383, 543
MalI	GATC	9 cut(s)	87, 186, 346, 420, 479, 781, 890, 981, 1011
MboI	GATC	9 cut(s)	85, 184, 344, 418, 477, 779, 888, 979, 1009
MboII	GAAGA	5 cut(s)	98, 279, 551, 751, 940
MflI	RGATCY	2 cut(s)	344, 1009
MhlI	GDGCHC	1 cut(s)	694
MlsI	TGGCCA	1 cut(s)	617
MluCI	AATT	4 cut(s)	588, 806, 866, 1114
MluNI	TGGCCA	1 cut(s)	617
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	3 cut(s)	47, 230, 496
MmeI	TCCRAC	3 cut(s)	434, 576, 1066
Mox20I	TGGCCA	1 cut(s)	617
MroI	TCCGGA	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	653
MscI	TGGCCA	1 cut(s)	617
MslI	CAYNNNNRTG	1 cut(s)	699
Msp20I	TGGCCA	1 cut(s)	617
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	684
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	284
MwoI	GCNNNNNNNGC	4 cut(s)	323, 642, 997, 1126
NarI	GGCGCC	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	231
NdeII	GATC	9 cut(s)	85, 184, 344, 418, 477, 779, 888, 979, 1009
NlaIV	GGNNCC	3 cut(s)	238, 917, 1036
NmuCI	GTSAC	1 cut(s)	277
PaeR7I	CTCGAG	1 cut(s)	574
PaqCI	CACCTGC	1 cut(s)	834
PctI	GAATGC	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	91, 850
PflMI	CCANNNNNTGG	1 cut(s)	313
PkrI	GCNGC	1 cut(s)	604
PleI	GAGTC	3 cut(s)	47, 229, 495
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	3 cut(s)	47, 229, 495
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	3 cut(s)	238, 917, 1036
PspPI	GGNCC	1 cut(s)	316
PspXI	VCTCGAGB	1 cut(s)	574
PsrI	GAACNNNNNNTAC	2 cut(s)	563, 595
PstNI	CAGNNNCTG	1 cut(s)	877
PsuI	RGATCY	2 cut(s)	344, 1009
RsaI	GTAC	6 cut(s)	5, 75, 370, 442, 552, 623
RsaNI	GTAC	6 cut(s)	4, 74, 369, 441, 551, 622
RseI	CAYNNNNRTG	1 cut(s)	699
SatI	GCNGC	1 cut(s)	603
Sau3AI	GATC	9 cut(s)	85, 184, 344, 418, 477, 779, 888, 979, 1009
Sau96I	GGNCC	1 cut(s)	316
ScaI	AGTACT	3 cut(s)	75, 370, 442
SchI	GAGTC	3 cut(s)	47, 230, 496
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	694
SfaNI	GCATC	3 cut(s)	589, 655, 778
SfcI	CTRYAG	1 cut(s)	112
SfoI	GGCGCC	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	574
SlaI	CTCGAG	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	4 cut(s)	574, 673, 724, 831
SmoI	CTYRAG	4 cut(s)	574, 673, 724, 831
Sse9I	AATT	4 cut(s)	588, 806, 866, 1114
SsiI	CCGC	3 cut(s)	282, 645, 1032
SspDI	GGCGCC	1 cut(s)	236
SspI	AATATT	1 cut(s)	821
SspMI	CTAG	3 cut(s)	468, 714, 1047
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	3 cut(s)	28, 461, 1004
TaiI	ACGT	1 cut(s)	1043
TaqI	TCGA	6 cut(s)	45, 98, 290, 429, 575, 782
TasI	AATT	4 cut(s)	588, 806, 866, 1114
TatI	WGTACW	5 cut(s)	3, 73, 368, 440, 621
TfiI	GAWTC	2 cut(s)	91, 850
TscAI	CASTG	2 cut(s)	771, 1007
TseFI	GTSAC	1 cut(s)	277
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	277
TspDTI	ATGAA	4 cut(s)	266, 717, 813, 1008
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	2 cut(s)	771, 1007
Van91I	CCANNNNNTGG	1 cut(s)	313
XagI	CCTNNNNNAGG	1 cut(s)	834
XapI	RAATTY	1 cut(s)	866
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	3 cut(s)	468, 714, 1047
ZrmI	AGTACT	3 cut(s)	75, 370, 442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.