Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0016106

Physical Location & Seq

Genomic Coordinates Forward (+)

8175184 .. 8176903

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G113300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGATTTCTGGGGCCACATCTAATTGTTTCCAAACCATGCCACAACAAGAAGAAGATGAGCACCAAGGTTTACAAATCTTTTCCATGACTGAAGATCCTCAAGTTTCTTCATTTTCAACCTCTTCAGGCCCAGAGAACCACTCAACCTCTCTCCTCTACAGTCTCTCAGTCCTCAAAGAGAAGGTTCGCCAAGCCAAATCCCTGTTCAGCATCCTTATCTCTCCAGATCACCACCACCATCAAAGTCAACCCCCGGAGTCGACCAGCATGGCCATAGCAAGCATGAACAATGTGATCCAAGAGATCATCGTCACGGCTTCTTCGATGATGTTCACCTGTCAGCAAATGGCCCTTGTGTCCCCTCCTCCTCCTCCTCCTCCTCCAGGTAATAACAACCCTACTAGCACTTCTAATACTATTGACCATGAAGAACAATTGCTCCACCATCAAGGCCTTAATAAGCCTCCTCCTCCTCGATTTTCGCAACCAAACTTTGGTAGCGGCCTTGACAATAAAATCGAAACTCCTTTCTATCCAACTAATGATGATCAAGCACTCGATTGGTTTAGCGACAGCTACATCGATTGTACCACGAGAGATACGAAAACTAGGCACGTGCAAGGCAAGCAACAGCCTATTTCTCCGAAAAGCTTCGACATTATTGAGCTAGACGCTGCTGATTTGCTGGCCAAGTACACCCATTACTGCCAGGTTTGTGGGAAAGGGTTCAAGCGCGACGCGAATTTGAGAATGCACATGAGGGCTCATGGGGACGAGTACAAGACCACCGTTGCACTAAGCAACCCCATGAAGAAAAACAATAGCAGTACAAATAACAACAACAATCATGGCGCCGGAGGCACAGATGGAAACACAGATTGTTCGACGAATTTGCCAAGGAAATATTCATGCCCGCAAGTAGGGTGCAGGTGGAACCAGAAGCACGCCAAGTTCCAGCCCTTGAAGTCGATGATCTGTGTGAAGAACCACTACAAGAGGAGCCATTGCCCCAAGATGTATGTGTGCAAGAGGTGCAACAGGAAGCAGTTTTCTGTGTTATCTGATCTGCGCACCCATGAGAAGCACTGTGGGGATCTGAGGTGGCAGTGCTCATGTGGAACCACATTTTCAAGGAAGGACAAGCTCATGGGTCATGTCGCTTTGTTCACAGGGCACACGCCAGTTGTGATCAGTTCTTTGGCTAGTAGGCTTGGGAAAGCTGATCAAAGGAGCCATGGATCACAGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

417

Amino Acids

46.5

Weight (kDa)

8.73

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22890
fragaria_vesca	FvH4_3g30580
malus_domestica	MD03G1128200.v1.1 MD11G1149000.v1.1
prunus_persica	Prupe.6G113300_v2.0.a1
pyrus_communis	pycom11g12190
rosa_chinensis	RchiOBHm_Chr5g0056621
rosa_laevigata	RLG00000035112
rosa_multiflora	Rmu_sc0004101.1_g000040 Rmu_sc0008982.1_g000004
rosa_rugosa	Rorug05G0301000
rosa_samantha	Rh5BG383000 Rh5CG406200 Rh5DG395800
rosa_wichuraiana	Rw5G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	918
Acc16I	TGCGCA	1 cut(s)	1070
Acc36I	ACCTGC	1 cut(s)	918
AccB1I	GGYRCC	1 cut(s)	851
AccB7I	CCANNNNNTGG	1 cut(s)	494
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	2 cut(s)	735, 740
AciI	CCGC	2 cut(s)	501, 914
AclWI	GGATC	4 cut(s)	89, 289, 1101, 1246
AcoI	YGGCCR	2 cut(s)	270, 687
AcsI	RAATTY	2 cut(s)	742, 889
AcuI	CTGAAG	2 cut(s)	108, 111
AcvI	CACGTG	1 cut(s)	616
AcyI	GRCGYC	1 cut(s)	852
AfaI	GTAC	4 cut(s)	589, 695, 779, 829
AfiI	CCNNNNNNNGG	3 cut(s)	383, 494, 920
AgsI	TTSAA	4 cut(s)	117, 730, 964, 1131
AjnI	CCWGG	2 cut(s)	382, 708
AjuI	GAANNNNNNNTTGG	4 cut(s)	188, 220, 889, 921
AloI	GAACNNNNNNTCC	2 cut(s)	423, 455
AluBI	AGCT	5 cut(s)	576, 651, 667, 1144, 1220
AluI	AGCT	5 cut(s)	576, 651, 667, 1144, 1220
Alw21I	GWGCWC	2 cut(s)	63, 1112
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	4 cut(s)	89, 289, 1101, 1246
AoxI	GGCC	7 cut(s)	12, 127, 270, 348, 451, 502, 687
ApeKI	GCWGC	1 cut(s)	674
ApoI	RAATTY	2 cut(s)	742, 889
Asp700I	GAANNNNTTC	2 cut(s)	650, 725
AspLEI	GCGC	3 cut(s)	735, 854, 1071
AspS9I	GGNCC	3 cut(s)	12, 128, 349
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	221, 325
BaeGI	GKGCMC	1 cut(s)	1176
BalI	TGGCCA	2 cut(s)	272, 689
BanI	GGYRCC	1 cut(s)	851
BanII	GRGCYC	1 cut(s)	766
BarI	GAAGNNNNNNTAC	2 cut(s)	974, 1006
BauI	CACGAG	1 cut(s)	592
BbrPI	CACGTG	1 cut(s)	616
Bbv12I	GWGCWC	2 cut(s)	63, 1112
BbvI	GCAGC	1 cut(s)	661
BccI	CCATC	3 cut(s)	246, 453, 860
BceAI	ACGGC	1 cut(s)	330
BcgI	CGANNNNNNTGC	2 cut(s)	874, 908
BciT130I	CCWGG	2 cut(s)	384, 710
BclI	TGATCA	3 cut(s)	547, 1188, 1222
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	4 cut(s)	402, 609, 668, 1203
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	855
BfuAI	ACCTGC	1 cut(s)	918
BisI	GCNGC	2 cut(s)	502, 675
BlsI	GCNGC	2 cut(s)	503, 676
Bme1390I	CCNGG	3 cut(s)	254, 384, 710
BmgT120I	GGNCC	3 cut(s)	12, 128, 349
BmiI	GGNNCC	6 cut(s)	13, 853, 935, 1001, 1120, 1232
BmrFI	CCNGG	3 cut(s)	254, 384, 710
BmsI	GCATC	1 cut(s)	219
BplI	GAGNNNNNCTC	2 cut(s)	125, 157
BpmI	CTGGAG	2 cut(s)	207, 366
BpuEI	CTTGAG	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	254
Bsa29I	ATCGAT	1 cut(s)	582
BsaAI	YACGTR	1 cut(s)	616
BsaHI	GRCGYC	1 cut(s)	852
BsaJI	CCNNGG	4 cut(s)	64, 252, 896, 1234
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	3 cut(s)	383, 494, 920
Bse1I	ACTGG	1 cut(s)	1181
Bse3DI	GCAATG	1 cut(s)	1003
BseBI	CCWGG	2 cut(s)	384, 710
BseCI	ATCGAT	1 cut(s)	582
BseDI	CCNNGG	4 cut(s)	64, 252, 896, 1234
BseGI	GGATG	1 cut(s)	210
BseLI	CCNNNNNNNGG	3 cut(s)	383, 494, 920
BseMI	GCAATG	1 cut(s)	1003
BseMII	CTCAG	2 cut(s)	180, 1088
BseNI	ACTGG	1 cut(s)	1181
BseSI	GKGCMC	1 cut(s)	1176
BseXI	GCAGC	1 cut(s)	661
BsgI	GTGCAG	1 cut(s)	946
Bsh1236I	CGCG	2 cut(s)	735, 740
BshFI	GGCC	7 cut(s)	14, 129, 272, 350, 453, 504, 689
BshNI	GGYRCC	1 cut(s)	851
BshVI	ATCGAT	1 cut(s)	582
BsiHKAI	GWGCWC	2 cut(s)	63, 1112
BsiSI	CCGG	2 cut(s)	254, 855
BslFI	GGGAC	2 cut(s)	343, 785
BslI	CCNNNNNNNGG	3 cut(s)	383, 494, 920
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	2 cut(s)	343, 785
BsmI	GAATGC	1 cut(s)	756
BsnI	GGCC	7 cut(s)	14, 129, 272, 350, 453, 504, 689
Bsp1286I	GDGCHC	4 cut(s)	63, 766, 1112, 1176
Bsp19I	CCATGG	1 cut(s)	1234
BspACI	CCGC	2 cut(s)	501, 914
BspANI	GGCC	7 cut(s)	14, 129, 272, 350, 453, 504, 689
BspCNI	CTCAG	2 cut(s)	179, 1089
BspDI	ATCGAT	1 cut(s)	582
BspFNI	CGCG	2 cut(s)	735, 740
BspLI	GGNNCC	6 cut(s)	13, 853, 935, 1001, 1120, 1232
BspMI	ACCTGC	1 cut(s)	918
BspPI	GGATC	4 cut(s)	89, 289, 1101, 1246
BspT107I	GGYRCC	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	1003
BsrI	ACTGG	1 cut(s)	1181
BssECI	CCNNGG	4 cut(s)	64, 252, 896, 1234
BssNI	GRCGYC	1 cut(s)	852
BssSI	CACGAG	1 cut(s)	592
BssT1I	CCWWGG	3 cut(s)	64, 896, 1234
Bst2BI	CACGAG	1 cut(s)	592
Bst2UI	CCWGG	2 cut(s)	384, 710
Bst4CI	ACNGT	3 cut(s)	161, 790, 1088
Bst6I	CTCTTC	1 cut(s)	127
BstACI	GRCGYC	1 cut(s)	852
BstAPI	GCANNNNNTGC	1 cut(s)	1032
BstBAI	YACGTR	1 cut(s)	616
BstC8I	GCNNGC	5 cut(s)	280, 626, 687, 914, 945
BstDEI	CTNAG	3 cut(s)	166, 797, 1097
BstDSI	CCRYGG	1 cut(s)	1234
BstENI	CCTNNNNNAGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	210
BstFNI	CGCG	2 cut(s)	735, 740
BstH2I	RGCGCY	1 cut(s)	855
BstHHI	GCGC	3 cut(s)	735, 854, 1071
BstMAI	GTCTC	1 cut(s)	167
BstMWI	GCNNNNNNNGC	3 cut(s)	625, 858, 1032
BstNI	CCWGG	2 cut(s)	384, 710
BstSCI	CCNGG	3 cut(s)	252, 382, 708
BstSFI	CTRYAG	1 cut(s)	157
BstSLI	GKGCMC	1 cut(s)	1176
BstUI	CGCG	2 cut(s)	735, 740
BstV1I	GCAGC	1 cut(s)	661
BstX2I	RGATCY	2 cut(s)	94, 1093
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	2 cut(s)	94, 1093
Bsu15I	ATCGAT	1 cut(s)	582
BsuRI	GGCC	7 cut(s)	14, 129, 272, 350, 453, 504, 689
BsuTUI	ATCGAT	1 cut(s)	582
BtgI	CCRYGG	1 cut(s)	1234
BtsCI	GGATG	1 cut(s)	210
BtsI	GCAGTG	1 cut(s)	1112
BtsIMutI	CAGTG	2 cut(s)	1084, 1112
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	5 cut(s)	280, 626, 687, 914, 945
CfoI	GCGC	3 cut(s)	735, 854, 1071
Cfr13I	GGNCC	3 cut(s)	12, 128, 349
ClaI	ATCGAT	1 cut(s)	582
CseI	GACGC	2 cut(s)	680, 746
Csp6I	GTAC	4 cut(s)	588, 694, 778, 828
CviQI	GTAC	4 cut(s)	588, 694, 778, 828
DdeI	CTNAG	3 cut(s)	166, 797, 1097
DinI	GGCGCC	1 cut(s)	853
EaeI	YGGCCR	2 cut(s)	270, 687
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	3 cut(s)	64, 896, 1234
Eco147I	AGGCCT	1 cut(s)	453
Eco24I	GRGCYC	1 cut(s)	766
Eco57I	CTGAAG	2 cut(s)	108, 111
Eco72I	CACGTG	1 cut(s)	616
EcoNI	CCTNNNNNAGG	1 cut(s)	381
EcoRII	CCWGG	2 cut(s)	382, 708
EcoT14I	CCWWGG	3 cut(s)	64, 896, 1234
EcoT38I	GRGCYC	1 cut(s)	766
EgeI	GGCGCC	1 cut(s)	853
EheI	GGCGCC	1 cut(s)	853
ErhI	CCWWGG	3 cut(s)	64, 896, 1234
FaqI	GGGAC	2 cut(s)	343, 785
FauI	CCCGC	1 cut(s)	921
FbaI	TGATCA	3 cut(s)	547, 1188, 1222
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	2 cut(s)	502, 675
FokI	GGATG	1 cut(s)	197
FriOI	GRGCYC	1 cut(s)	766
Fsp4HI	GCNGC	2 cut(s)	502, 675
FspBI	CTAG	4 cut(s)	402, 609, 668, 1203
FspI	TGCGCA	1 cut(s)	1070
GlaI	GCGC	3 cut(s)	734, 853, 1070
GluI	GCNGC	2 cut(s)	502, 675
GsuI	CTGGAG	2 cut(s)	207, 366
HaeII	RGCGCY	1 cut(s)	855
HaeIII	GGCC	7 cut(s)	14, 129, 272, 350, 453, 504, 689
HapII	CCGG	2 cut(s)	254, 855
HgaI	GACGC	2 cut(s)	680, 746
HhaI	GCGC	3 cut(s)	735, 854, 1071
Hin1I	GRCGYC	1 cut(s)	852
Hin6I	GCGC	3 cut(s)	733, 852, 1069
HinP1I	GCGC	3 cut(s)	733, 852, 1069
HincII	GTYRAC	2 cut(s)	248, 261
HindII	GTYRAC	2 cut(s)	248, 261
HindIII	AAGCTT	1 cut(s)	649
HinfI	GANTC	1 cut(s)	257
HpaII	CCGG	2 cut(s)	254, 855
HphI	GGTGA	2 cut(s)	221, 325
Hpy166II	GTNNAC	6 cut(s)	71, 248, 261, 333, 696, 1167
Hpy188I	TCNGA	3 cut(s)	645, 1063, 1098
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	6 cut(s)	71, 248, 261, 333, 696, 1167
Hpy99I	CGWCG	2 cut(s)	740, 889
HpyAV	CCTTC	2 cut(s)	175, 1129
HpyCH4III	ACNGT	3 cut(s)	161, 790, 1088
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	6 cut(s)	619, 754, 794, 927, 1026, 1035
HpyF10VI	GCNNNNNNNGC	3 cut(s)	625, 858, 1032
HpyF3I	CTNAG	3 cut(s)	166, 797, 1097
HpySE526I	ACGT	1 cut(s)	615
Hsp92I	GRCGYC	1 cut(s)	852
HspAI	GCGC	3 cut(s)	733, 852, 1069
KasI	GGCGCC	1 cut(s)	851
Ksp22I	TGATCA	3 cut(s)	547, 1188, 1222
LmnI	GCTCC	3 cut(s)	444, 999, 1230
Lsp1109I	GCAGC	1 cut(s)	661
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	4 cut(s)	402, 609, 668, 1203
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	310
MboII	GAAGA	9 cut(s)	62, 65, 99, 104, 114, 312, 440, 823, 994
MfeI	CAATTG	1 cut(s)	434
MflI	RGATCY	2 cut(s)	94, 1093
MhlI	GDGCHC	4 cut(s)	63, 766, 1112, 1176
MlsI	TGGCCA	2 cut(s)	272, 689
MluCI	AATT	4 cut(s)	22, 434, 742, 889
MluNI	TGGCCA	2 cut(s)	272, 689
Mly113I	GGCGCC	1 cut(s)	852
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	560
Mox20I	TGGCCA	2 cut(s)	272, 689
MroXI	GAANNNNTTC	2 cut(s)	650, 725
MscI	TGGCCA	2 cut(s)	272, 689
MseI	TTAA	1 cut(s)	456
Msp20I	TGGCCA	2 cut(s)	272, 689
MspI	CCGG	2 cut(s)	254, 855
MspR9I	CCNGG	3 cut(s)	254, 384, 710
MunI	CAATTG	1 cut(s)	434
Mva1269I	GAATGC	1 cut(s)	756
MvaI	CCWGG	2 cut(s)	384, 710
MvnI	CGCG	2 cut(s)	735, 740
MwoI	GCNNNNNNNGC	3 cut(s)	625, 858, 1032
NarI	GGCGCC	1 cut(s)	852
NciI	CCSGG	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	1234
NlaIV	GGNNCC	6 cut(s)	13, 853, 935, 1001, 1120, 1232
NmuCI	GTSAC	1 cut(s)	310
NsbI	TGCGCA	1 cut(s)	1070
PaqCI	CACCTGC	1 cut(s)	918
PceI	AGGCCT	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	2 cut(s)	320, 599
PctI	GAATGC	1 cut(s)	756
PdmI	GAANNNNTTC	2 cut(s)	650, 725
PflMI	CCANNNNNTGG	1 cut(s)	494
PkrI	GCNGC	2 cut(s)	503, 676
PleI	GAGTC	1 cut(s)	265
PluTI	GGCGCC	1 cut(s)	855
PmaCI	CACGTG	1 cut(s)	616
PmlI	CACGTG	1 cut(s)	616
PpsI	GAGTC	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	616
Psp6I	CCWGG	2 cut(s)	382, 708
PspCI	CACGTG	1 cut(s)	616
PspGI	CCWGG	2 cut(s)	382, 708
PspN4I	GGNNCC	6 cut(s)	13, 853, 935, 1001, 1120, 1232
PspPI	GGNCC	3 cut(s)	12, 128, 349
PsuI	RGATCY	2 cut(s)	94, 1093
RsaI	GTAC	4 cut(s)	589, 695, 779, 829
RsaNI	GTAC	4 cut(s)	588, 694, 778, 828
SalI	GTCGAC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	2 cut(s)	502, 675
Sau96I	GGNCC	3 cut(s)	12, 128, 349
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	3 cut(s)	254, 384, 710
SduI	GDGCHC	4 cut(s)	63, 766, 1112, 1176
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	157
SfoI	GGCGCC	1 cut(s)	853
SmlI	CTYRAG	1 cut(s)	99
SmoI	CTYRAG	1 cut(s)	99
Sse9I	AATT	4 cut(s)	22, 434, 742, 889
SseBI	AGGCCT	1 cut(s)	453
SsiI	CCGC	2 cut(s)	501, 914
SspDI	GGCGCC	1 cut(s)	851
SspI	AATATT	1 cut(s)	905
SspMI	CTAG	4 cut(s)	402, 609, 668, 1203
StuI	AGGCCT	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	252, 382, 708
StyI	CCWWGG	3 cut(s)	64, 896, 1234
TaaI	ACNGT	3 cut(s)	161, 790, 1088
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	9 cut(s)	260, 323, 475, 519, 558, 582, 654, 884, 968
TasI	AATT	4 cut(s)	22, 434, 742, 889
TatI	WGTACW	3 cut(s)	693, 777, 827
TauI	GCSGC	1 cut(s)	504
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	2 cut(s)	1091, 1112
TseFI	GTSAC	1 cut(s)	310
TseI	GCWGC	1 cut(s)	674
Tsp45I	GTSAC	1 cut(s)	310
TspDTI	ATGAA	5 cut(s)	99, 299, 441, 824, 897
TspRI	CASTG	2 cut(s)	1091, 1112
Van91I	CCANNNNNTGG	1 cut(s)	494
XagI	CCTNNNNNAGG	1 cut(s)	381
XapI	RAATTY	2 cut(s)	742, 889
XmiI	GTMKAC	1 cut(s)	260
XmnI	GAANNNNTTC	2 cut(s)	650, 725
XspI	CTAG	4 cut(s)	402, 609, 668, 1203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.