Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0016106

Physical Location & Seq

Genomic Coordinates Reverse (-)

54351544 .. 54352731

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG406200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAATATTAATCCGGGGGCCACACCGAATTGTTTCCAAGGTATGTACTCCATGACGGGTCAAGATACAGTTTCGTCGTTTTCACTCGAACCAGACTCATCATCATCTGGAACAGTACTACCCCAAGATCAGAATTACTCGACTTCTCTTCTCTACAGCCTCTCCGTCCTCAAAGAGAAAGTGCGTCAAGCCAAATCGCTGGTCGGCGTCCTTATTGCTCCTCCGGATCATCACCAAAGTCAACAACAACAACTTCCAGAGTCAACGACCATGGGCACCGTGGCGAGCATGAACAATGTTATCCAAGAAATCATCGTCACCGCGTCTTCGATGATGTTCACTTGCCAACAGATGGCCCTTGTTGCTCCAGGTAACGACACAAGATCTGAACCAAACTTTAGTATTAGTACTGCTGGTCGTAGTAACATTAGAGACGCTACTTTCTATCCAACAAATGATCAAACACTCGATTGGTTTAGTACTGAGAACTACAACAACTGTCCCACTAGGGATATGATCGGTAGGAGTCATGGACAGGTCGAAACGAAAGAGTTTCCTCAAAGAGTTGAAACCAACAATGCGTTACAGGTACAAAATCTTCCCCCAAAGAACTCGAGCTACGACATAATTGAGTTGGATGCTGCTGATTTGTTGGCCAAGTACACTCATTACTGCCAAGTTTGCGGGAAAGGGTTCAAGCGTGATGCGAACTTGAGAATGCACATGAGGGCTCACGGGGATGAATACAAGACTAGCATTGCCTTGAGCAACCCTTTGAAGAACAACAATAAGCAGAATAGTGCAGTGAACATACATGGATCGAGCGATGCTGAGTGTTCGGTGAAATTACCGAGGAAATATTCATGTCCTCAAGAAGGGTGCAGGTGGAATCAAAAGCACGCCAAATTCCAGCCTCTGAAGTCCATGATCTGCGTGAAAAATCACTACAAGAGGAGCCATTGTCCGAAGATGTATGTATGTAAGAGGTGCAATCGGAAGCAGTTTTCTGTGTTATCTGATCTAAGAACGCATGAAAAGCACTGTGGGGATCTCAGGTGGCAATGCTCTTGCGGAACCACATTTTCTAGGAAAGATAAGCTTATGGGTCATGTTGCTTTGTTCGTTGGACACACACCAGTTATTCTCAGTTCTAATTTGCCTATTAGGCATGGAAAAGCTGTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

395

Amino Acids

44.22

Weight (kDa)

9.01

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	287 - 321	4.3e-22	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	325 - 349	6.2e-06	BIRD-IDD transcription factor, third C2HC zinc finger
zf-C2H2_STOP2_C	PF23118	352 - 381	3.3e-17	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22890
fragaria_vesca	FvH4_3g30580
malus_domestica	MD03G1128200.v1.1 MD11G1149000.v1.1
prunus_persica	Prupe.6G113300_v2.0.a1
pyrus_communis	pycom11g12190
rosa_chinensis	RchiOBHm_Chr5g0056621
rosa_laevigata	RLG00000035112
rosa_multiflora	Rmu_sc0004101.1_g000040 Rmu_sc0008982.1_g000004
rosa_rugosa	Rorug05G0301000
rosa_samantha	Rh5BG383000 Rh5CG406200 Rh5DG395800
rosa_wichuraiana	Rw5G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	873
Acc36I	ACCTGC	1 cut(s)	873
AccB1I	GGYRCC	1 cut(s)	275
AccB7I	CCANNNNNTGG	1 cut(s)	352
AccII	CGCG	1 cut(s)	323
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	3 cut(s)	321, 684, 1071
AclWI	GGATC	3 cut(s)	234, 826, 1056
AcoI	YGGCCR	1 cut(s)	654
AcsI	RAATTY	1 cut(s)	905
AcuI	CTGAAG	1 cut(s)	938
AcyI	GRCGYC	1 cut(s)	207
AfaI	GTAC	6 cut(s)	47, 117, 409, 481, 591, 662
AfiI	CCNNNNNNNGG	2 cut(s)	352, 875
AgsI	TTSAA	3 cut(s)	569, 697, 778
AjnI	CCWGG	1 cut(s)	367
AluBI	AGCT	3 cut(s)	618, 1099, 1178
AluI	AGCT	3 cut(s)	618, 1099, 1178
Alw26I	GTCTC	1 cut(s)	426
AlwI	GGATC	3 cut(s)	234, 826, 1056
AlwNI	CAGNNNCTG	1 cut(s)	916
Ama87I	CYCGRG	1 cut(s)	613
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	3 cut(s)	18, 354, 654
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	1 cut(s)	905
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AseI	ATTAAT	1 cut(s)	9
Asp700I	GAANNNNTTC	2 cut(s)	32, 692
AspS9I	GGNCC	2 cut(s)	18, 355
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	3 cut(s)	224, 310, 853
AvaI	CYCGRG	1 cut(s)	613
BaeGI	GKGCMC	1 cut(s)	278
BalI	TGGCCA	1 cut(s)	656
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	733
BarI	GAAGNNNNNNTAC	2 cut(s)	582, 614
BbsI	GAAGAC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	1 cut(s)	369
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	1 cut(s)	426
BfaI	CTAG	3 cut(s)	507, 753, 1086
BfmI	CTRYAG	1 cut(s)	154
BfuAI	ACCTGC	1 cut(s)	873
BglI	GCCNNNNNGGC	1 cut(s)	1165
BglII	AGATCT	1 cut(s)	383
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
BmcAI	AGTACT	3 cut(s)	117, 409, 481
Bme1390I	CCNGG	2 cut(s)	15, 369
BmeT110I	CYCGRG	1 cut(s)	613
BmgT120I	GGNCC	2 cut(s)	18, 355
BmiI	GGNNCC	4 cut(s)	19, 277, 956, 1075
BmrFI	CCNGG	2 cut(s)	15, 369
BmsI	GCATC	3 cut(s)	628, 694, 817
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	351
BpuEI	CTTGAG	3 cut(s)	733, 784, 855
BpuMI	CCSGG	1 cut(s)	15
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	5 cut(s)	14, 37, 270, 279, 851
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 946, 976
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 875
Bse1I	ACTGG	1 cut(s)	1136
Bse3DI	GCAATG	2 cut(s)	756, 1067
BseAI	TCCGGA	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	369
BseDI	CCNNGG	5 cut(s)	14, 37, 270, 279, 851
BseGI	GGATG	2 cut(s)	643, 745
BseLI	CCNNNNNNNGG	2 cut(s)	352, 875
BseMI	GCAATG	2 cut(s)	756, 1067
BseMII	CTCAG	4 cut(s)	474, 822, 1066, 1159
BseNI	ACTGG	1 cut(s)	1136
BseRI	GAGGAG	2 cut(s)	210, 967
BseSI	GKGCMC	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	628
BsgI	GTGCAG	2 cut(s)	822, 901
Bsh1236I	CGCG	1 cut(s)	323
BshFI	GGCC	3 cut(s)	20, 356, 656
BshNI	GGYRCC	1 cut(s)	275
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	2 cut(s)	14, 224
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	352, 875
BsmAI	GTCTC	1 cut(s)	426
BsmBI	CGTCTC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	723
BsnI	GGCC	3 cut(s)	20, 356, 656
BsoBI	CYCGRG	1 cut(s)	613
Bsp1286I	GDGCHC	2 cut(s)	278, 733
Bsp13I	TCCGGA	1 cut(s)	223
Bsp143I	GATC	9 cut(s)	127, 226, 383, 457, 516, 818, 927, 1018, 1048
Bsp19I	CCATGG	1 cut(s)	270
BspACI	CCGC	3 cut(s)	321, 684, 1071
BspANI	GGCC	3 cut(s)	20, 356, 656
BspCNI	CTCAG	4 cut(s)	475, 823, 1065, 1158
BspEI	TCCGGA	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	4 cut(s)	19, 277, 956, 1075
BspMI	ACCTGC	1 cut(s)	873
BspPI	GGATC	3 cut(s)	234, 826, 1056
BspT107I	GGYRCC	1 cut(s)	275
BsrDI	GCAATG	2 cut(s)	756, 1067
BsrI	ACTGG	1 cut(s)	1136
BssECI	CCNNGG	5 cut(s)	14, 37, 270, 279, 851
BssMI	GATC	9 cut(s)	127, 226, 383, 457, 516, 818, 927, 1018, 1048
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	37, 270
Bst2UI	CCWGG	1 cut(s)	369
Bst4CI	ACNGT	5 cut(s)	70, 115, 280, 500, 1043
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	286, 900
BstDEI	CTNAG	5 cut(s)	483, 831, 1022, 1052, 1145
BstDSI	CCRYGG	2 cut(s)	270, 279
BstENI	CCTNNNNNAGG	1 cut(s)	873
BstF5I	GGATG	2 cut(s)	643, 745
BstFNI	CGCG	1 cut(s)	323
BstKTI	GATC	9 cut(s)	130, 229, 386, 460, 519, 821, 930, 1021, 1051
BstMAI	GTCTC	1 cut(s)	426
BstMBI	GATC	9 cut(s)	127, 226, 383, 457, 516, 818, 927, 1018, 1048
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 681, 1036, 1165
BstNI	CCWGG	1 cut(s)	369
BstSCI	CCNGG	2 cut(s)	13, 367
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	278
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	1 cut(s)	628
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	2 cut(s)	383, 1048
BstXI	CCANNNNNNTGG	1 cut(s)	199
BstYI	RGATCY	2 cut(s)	383, 1048
BsuRI	GGCC	3 cut(s)	20, 356, 656
BtgI	CCRYGG	2 cut(s)	270, 279
BtgZI	GCGATG	1 cut(s)	840
BtsCI	GGATG	2 cut(s)	643, 745
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	2 cut(s)	810, 1039
BveI	ACCTGC	1 cut(s)	873
Cac8I	GCNNGC	2 cut(s)	286, 900
CaiI	CAGNNNCTG	1 cut(s)	916
Cfr13I	GGNCC	2 cut(s)	18, 355
CseI	GACGC	4 cut(s)	173, 196, 312, 443
Csp6I	GTAC	6 cut(s)	46, 116, 408, 480, 590, 661
CviQI	GTAC	6 cut(s)	46, 116, 408, 480, 590, 661
DdeI	CTNAG	5 cut(s)	483, 831, 1022, 1052, 1145
DpnI	GATC	9 cut(s)	129, 228, 385, 459, 518, 820, 929, 1020, 1050
DpnII	GATC	9 cut(s)	127, 226, 383, 457, 516, 818, 927, 1018, 1048
EaeI	YGGCCR	1 cut(s)	654
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	2 cut(s)	37, 270
Eco24I	GRGCYC	1 cut(s)	733
Eco57I	CTGAAG	1 cut(s)	938
Eco88I	CYCGRG	1 cut(s)	613
EcoNI	CCTNNNNNAGG	1 cut(s)	873
EcoRII	CCWGG	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	37, 270
EcoT38I	GRGCYC	1 cut(s)	733
ErhI	CCWWGG	2 cut(s)	37, 270
Esp3I	CGTCTC	1 cut(s)	426
FalI	AAGNNNNNCTT	2 cut(s)	1083, 1115
FaqI	GGGAC	1 cut(s)	486
FauI	CCCGC	1 cut(s)	677
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	2 cut(s)	650, 752
FriOI	GRGCYC	1 cut(s)	733
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	3 cut(s)	507, 753, 1086
GluI	GCNGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	20, 356, 656
HapII	CCGG	2 cut(s)	14, 224
HgaI	GACGC	4 cut(s)	173, 196, 312, 443
Hin1I	GRCGYC	1 cut(s)	207
HincII	GTYRAC	2 cut(s)	242, 264
HindII	GTYRAC	2 cut(s)	242, 264
HindIII	AAGCTT	1 cut(s)	1097
HinfI	GANTC	4 cut(s)	95, 260, 526, 889
HpaII	CCGG	2 cut(s)	14, 224
HphI	GGTGA	3 cut(s)	224, 310, 853
Hpy166II	GTNNAC	6 cut(s)	242, 264, 339, 663, 808, 1183
Hpy188I	TCNGA	6 cut(s)	132, 388, 918, 966, 996, 1018
Hpy188III	TCNNGA	5 cut(s)	62, 108, 224, 257, 872
Hpy8I	GTNNAC	6 cut(s)	242, 264, 339, 663, 808, 1183
Hpy99I	CGWCG	1 cut(s)	79
HpyAV	CCTTC	1 cut(s)	869
HpyCH4III	ACNGT	5 cut(s)	70, 115, 280, 500, 1043
HpyCH4V	TGCA	4 cut(s)	721, 803, 882, 990
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 681, 1036, 1165
HpyF3I	CTNAG	5 cut(s)	483, 831, 1022, 1052, 1145
Hsp92I	GRCGYC	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	223
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	9 cut(s)	127, 226, 383, 457, 516, 818, 927, 1018, 1048
LmnI	GCTCC	3 cut(s)	223, 370, 954
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	3 cut(s)	628, 694, 817
MaeI	CTAG	3 cut(s)	507, 753, 1086
MaeIII	GTNAC	4 cut(s)	316, 371, 422, 582
MalI	GATC	9 cut(s)	129, 228, 385, 459, 518, 820, 929, 1020, 1050
MboI	GATC	9 cut(s)	127, 226, 383, 457, 516, 818, 927, 1018, 1048
MboII	GAAGA	5 cut(s)	140, 318, 590, 790, 979
MflI	RGATCY	2 cut(s)	383, 1048
MhlI	GDGCHC	2 cut(s)	278, 733
MlsI	TGGCCA	1 cut(s)	656
MluCI	AATT	6 cut(s)	28, 133, 627, 845, 905, 1153
MluNI	TGGCCA	1 cut(s)	656
MlyI	GAGTC	3 cut(s)	89, 269, 535
MmeI	TCCRAC	3 cut(s)	473, 615, 1105
Mox20I	TGGCCA	1 cut(s)	656
MroI	TCCGGA	1 cut(s)	223
MroXI	GAANNNNTTC	2 cut(s)	32, 692
MscI	TGGCCA	1 cut(s)	656
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	738
Msp20I	TGGCCA	1 cut(s)	656
MspI	CCGG	2 cut(s)	14, 224
MspR9I	CCNGG	2 cut(s)	15, 369
Mva1269I	GAATGC	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	369
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	4 cut(s)	362, 681, 1036, 1165
NciI	CCSGG	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	270
NdeII	GATC	9 cut(s)	127, 226, 383, 457, 516, 818, 927, 1018, 1048
NlaIV	GGNNCC	4 cut(s)	19, 277, 956, 1075
NmuCI	GTSAC	1 cut(s)	316
PaeR7I	CTCGAG	1 cut(s)	613
PaqCI	CACCTGC	1 cut(s)	873
PctI	GAATGC	1 cut(s)	723
PdmI	GAANNNNTTC	2 cut(s)	32, 692
PfeI	GAWTC	1 cut(s)	889
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	643
PleI	GAGTC	3 cut(s)	89, 268, 534
PpsI	GAGTC	3 cut(s)	89, 268, 534
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	367
PspN4I	GGNNCC	4 cut(s)	19, 277, 956, 1075
PspPI	GGNCC	2 cut(s)	18, 355
PspXI	VCTCGAGB	1 cut(s)	613
PsrI	GAACNNNNNNTAC	2 cut(s)	602, 634
PstNI	CAGNNNCTG	1 cut(s)	916
PsuI	RGATCY	2 cut(s)	383, 1048
RsaI	GTAC	6 cut(s)	47, 117, 409, 481, 591, 662
RsaNI	GTAC	6 cut(s)	46, 116, 408, 480, 590, 661
RseI	CAYNNNNRTG	1 cut(s)	738
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	9 cut(s)	127, 226, 383, 457, 516, 818, 927, 1018, 1048
Sau96I	GGNCC	2 cut(s)	18, 355
ScaI	AGTACT	3 cut(s)	117, 409, 481
SchI	GAGTC	3 cut(s)	89, 269, 535
ScrFI	CCNGG	2 cut(s)	15, 369
SduI	GDGCHC	2 cut(s)	278, 733
SfaNI	GCATC	3 cut(s)	628, 694, 817
SfcI	CTRYAG	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	613
SlaI	CTCGAG	1 cut(s)	613
SmiMI	CAYNNNNRTG	1 cut(s)	738
SmlI	CTYRAG	4 cut(s)	613, 712, 763, 870
SmoI	CTYRAG	4 cut(s)	613, 712, 763, 870
Sse9I	AATT	6 cut(s)	28, 133, 627, 845, 905, 1153
SsiI	CCGC	3 cut(s)	321, 684, 1071
SspI	AATATT	2 cut(s)	7, 860
SspMI	CTAG	3 cut(s)	507, 753, 1086
StyD4I	CCNGG	2 cut(s)	13, 367
StyI	CCWWGG	2 cut(s)	37, 270
TaaI	ACNGT	5 cut(s)	70, 115, 280, 500, 1043
TaqI	TCGA	7 cut(s)	87, 140, 329, 468, 540, 614, 821
TasI	AATT	6 cut(s)	28, 133, 627, 845, 905, 1153
TatI	WGTACW	5 cut(s)	45, 115, 407, 479, 660
TfiI	GAWTC	1 cut(s)	889
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	810, 1046
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	5 cut(s)	17, 305, 756, 852, 1047
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	2 cut(s)	810, 1046
Van91I	CCANNNNNTGG	1 cut(s)	352
VspI	ATTAAT	1 cut(s)	9
XagI	CCTNNNNNAGG	1 cut(s)	873
XapI	RAATTY	1 cut(s)	905
XcmI	CCANNNNNNNNNTGG	1 cut(s)	277
XhoI	CTCGAG	1 cut(s)	613
XmnI	GAANNNNTTC	2 cut(s)	32, 692
XspI	CTAG	3 cut(s)	507, 753, 1086
ZrmI	AGTACT	3 cut(s)	117, 409, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.