Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0016106

Physical Location & Seq

Genomic Coordinates Forward (+)

11096240 .. 11097493

Gene Structure 1254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g12190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGATTTCTGGGGCTCCATCTAATTGTTTCCAAACTATGTTACAACAGCAACAACACCATCTAGGGTTACAAATCTATGAAGATCCTGATCAGGTTTCTTCATTTTCACTCGAACCAAACTCCTCATCATCGTCGGTTCCTGACAATCACTCAACCTCTCTCCTCTGCAACGTCTCAGTCCTAAAAGAAAAGGTTCATCAAGCCAAATCACTAGTCAGCATCCTCATCTCTCCAAATCATCATCAAATTCAACCCCAAGAGTCAGCCACCATCACCCTAGCAAGCATGAGCAATATCATACAAGAAATCATCGTCACGGCTTCTTCTATGATGTTCACATGTCAACAGATGGCCCTTGTTTCCACTACTACTCCAGGTAACCACATCAACAACACTAATACTAGCACCACTACTACTGGTCAAGGTCTTAGTAATCCTTCTGATCATCGTGATCATAATCGCTTATCGGAAACAAACTTTGGTGGCGGTCATGGTAATAAAATTGATCAATCTGGTTTCTATTCTACTCGTGAACACACACTCGATTGGTTTAGCGACAGCTACAATGATTGTACCACGGCAGATCCGAGTACTAGGATTGTCAATCAAAGGGGCAACAATGATAAGCATGTGCAAGGCAAGGAATTGCCTGTTTCTTCGAACTACGACATTATTGAGGTAGATGCTTCGGATTTGTTAGCTAAATACACCCATTACTGCCAAATTTGTGGCAAAGGGTTCAAGCGCGATGCGAATTTGAGAATGCACATGAGGGCTCATGGAGATGAGTACAAGACTATCGTTGCTCTAAGCAACCCCATGAAGAAAACTAACAACAATAATGATAGTGCAGGAGGCATAGATGGAAACATGGCATGTTCGACGAAATTGCCAAGAAAGTATTCGTGTCCGCAAGAAGGGTGTAGGTGGAACCAAAAGCACGCGAAATTCCAGCCTTTGAAATCGATGATTTGTGTGAAGAATCACTACAAGAGGAGCCATTGTCCTAAGATGTATGTGTGCAAGAGGTGCAACAGGAAGCAGTTCTCGGTGTTATCTGATCTACGCACCCATGAGAAGCACTGCGGCGATCTGAGATGGCAGTGTTCATGTGGAACAACATTTTCAAGGAAAGATAAGCTGATGGGGCACGTCGCGTTATTCACCGGGCATACGCCAGTTATGATCACTTCTTTGACAAGGATTGGGAAGGTTGATCAGCAAAGCCATCGATCACAGATGCAAATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

418

Amino Acids

46.61

Weight (kDa)

8.85

Isoelectric Point (pI)

46.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	301 - 335	4.6e-22	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	339 - 363	6.5e-06	BIRD-IDD transcription factor, third C2HC zinc finger
zf-C2H2_STOP2_C	PF23118	366 - 394	6.2e-17	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22890
fragaria_vesca	FvH4_3g30580
malus_domestica	MD03G1128200.v1.1 MD11G1149000.v1.1
prunus_persica	Prupe.6G113300_v2.0.a1
pyrus_communis	pycom11g12190
rosa_chinensis	RchiOBHm_Chr5g0056621
rosa_laevigata	RLG00000035112
rosa_multiflora	Rmu_sc0004101.1_g000040 Rmu_sc0008982.1_g000004
rosa_rugosa	Rorug05G0301000
rosa_samantha	Rh5BG383000 Rh5CG406200 Rh5DG395800
rosa_wichuraiana	Rw5G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	747, 944, 1157
AciI	CCGC	3 cut(s)	486, 911, 1086
AclWI	GGATC	2 cut(s)	77, 578
AcsI	RAATTY	4 cut(s)	246, 723, 754, 947
AfaI	GTAC	3 cut(s)	574, 592, 791
AfiI	CCNNNNNNNGG	1 cut(s)	917
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	4 cut(s)	251, 742, 961, 1128
AhlI	ACTAGT	1 cut(s)	211
AjiI	CACGTC	1 cut(s)	1153
AjnI	CCWGG	1 cut(s)	373
AjuI	GAANNNNNNNTTGG	4 cut(s)	462, 494, 886, 918
AluBI	AGCT	3 cut(s)	561, 701, 1141
AluI	AGCT	3 cut(s)	561, 701, 1141
Alw26I	GTCTC	1 cut(s)	178
AlwI	GGATC	2 cut(s)	77, 578
AoxI	GGCC	1 cut(s)	351
ApoI	RAATTY	4 cut(s)	246, 723, 754, 947
ArsI	GACNNNNNNTTYG	2 cut(s)	198, 230
Asp700I	GAANNNNTTC	3 cut(s)	192, 901, 1043
AspLEI	GCGC	1 cut(s)	747
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	1168
AsuHPI	GGTGA	2 cut(s)	265, 1156
AsuII	TTCGAA	1 cut(s)	659
BaeGI	GKGCMC	1 cut(s)	1152
BanII	GRGCYC	2 cut(s)	16, 778
BarI	GAAGNNNNNNTAC	2 cut(s)	971, 1003
BauI	CACGAG	1 cut(s)	528
BccI	CCATC	8 cut(s)	25, 66, 278, 343, 857, 1092, 1138, 1236
BceAI	ACGGC	2 cut(s)	333, 594
BcgI	CGANNNNNNTGC	4 cut(s)	871, 905, 1211, 1245
BciT130I	CCWGG	1 cut(s)	375
BclI	TGATCA	6 cut(s)	88, 442, 451, 505, 1185, 1216
BcnI	CCSGG	1 cut(s)	1168
BcoDI	GTCTC	1 cut(s)	178
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	5 cut(s)	62, 212, 278, 402, 594
BisI	GCNGC	1 cut(s)	1087
BlsI	GCNGC	1 cut(s)	1088
BmcAI	AGTACT	1 cut(s)	592
Bme1390I	CCNGG	2 cut(s)	375, 1168
BmgBI	CACGTC	1 cut(s)	1153
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	4 cut(s)	15, 138, 932, 998
BmrFI	CCNGG	2 cut(s)	375, 1168
BmsI	GCATC	4 cut(s)	228, 673, 739, 1230
BpmI	CTGGAG	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	1168
Bsa29I	ATCGAT	2 cut(s)	965, 1231
BsaBI	GATNNNNATC	2 cut(s)	87, 456
BsaJI	CCNNGG	1 cut(s)	576
BsaXI	ACNNNNNCTCC	4 cut(s)	355, 385, 988, 1018
Bsc4I	CCNNNNNNNGG	1 cut(s)	917
Bse1I	ACTGG	2 cut(s)	421, 1178
Bse8I	GATNNNNATC	2 cut(s)	87, 456
BseBI	CCWGG	1 cut(s)	375
BseCI	ATCGAT	2 cut(s)	965, 1231
BseDI	CCNNGG	1 cut(s)	576
BseGI	GGATG	1 cut(s)	219
BseJI	GATNNNNATC	2 cut(s)	87, 456
BseLI	CCNNNNNNNGG	1 cut(s)	917
BseMII	CTCAG	2 cut(s)	189, 1085
BseNI	ACTGG	2 cut(s)	421, 1178
BseRI	GAGGAG	3 cut(s)	112, 152, 1009
BseSI	GKGCMC	1 cut(s)	1152
BsgI	GTGCAG	1 cut(s)	870
Bsh1236I	CGCG	3 cut(s)	747, 944, 1157
BshFI	GGCC	1 cut(s)	353
BshVI	ATCGAT	2 cut(s)	965, 1231
BsiSI	CCGG	1 cut(s)	1167
BslI	CCNNNNNNNGG	1 cut(s)	917
BsmAI	GTCTC	1 cut(s)	178
BsmBI	CGTCTC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	768
BsnI	GGCC	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	659
Bsp1286I	GDGCHC	3 cut(s)	16, 778, 1152
BspACI	CCGC	3 cut(s)	486, 911, 1086
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	2 cut(s)	188, 1086
BspDI	ATCGAT	2 cut(s)	965, 1231
BspFNI	CGCG	3 cut(s)	747, 944, 1157
BspLI	GGNNCC	4 cut(s)	15, 138, 932, 998
BspPI	GGATC	2 cut(s)	77, 578
BspT104I	TTCGAA	1 cut(s)	659
BsrI	ACTGG	2 cut(s)	421, 1178
BssECI	CCNNGG	1 cut(s)	576
BssSI	CACGAG	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	528
Bst2UI	CCWGG	1 cut(s)	375
BstAPI	GCANNNNNTGC	1 cut(s)	1029
BstBI	TTCGAA	1 cut(s)	659
BstC8I	GCNNGC	2 cut(s)	283, 942
BstDEI	CTNAG	5 cut(s)	175, 428, 809, 1008, 1094
BstDSI	CCRYGG	1 cut(s)	576
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	3 cut(s)	747, 944, 1157
BstHHI	GCGC	1 cut(s)	747
BstMAI	GTCTC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	2 cut(s)	1029, 1147
BstNI	CCWGG	1 cut(s)	375
BstNSI	RCATGY	3 cut(s)	342, 632, 879
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	2 cut(s)	373, 1166
BstSLI	GKGCMC	1 cut(s)	1152
BstUI	CGCG	3 cut(s)	747, 944, 1157
BstX2I	RGATCY	2 cut(s)	82, 583
BstXI	CCANNNNNNTGG	1 cut(s)	728
BstYI	RGATCY	2 cut(s)	82, 583
Bsu15I	ATCGAT	2 cut(s)	965, 1231
BsuRI	GGCC	1 cut(s)	353
BsuTUI	ATCGAT	2 cut(s)	965, 1231
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	762
BtrI	CACGTC	1 cut(s)	1153
BtsCI	GGATG	1 cut(s)	219
BtsI	GCAGTG	2 cut(s)	1081, 1109
BtsIMutI	CAGTG	2 cut(s)	1081, 1109
Cac8I	GCNNGC	2 cut(s)	283, 942
CfoI	GCGC	1 cut(s)	747
Cfr13I	GGNCC	1 cut(s)	352
ClaI	ATCGAT	2 cut(s)	965, 1231
Csp6I	GTAC	3 cut(s)	573, 591, 790
CviQI	GTAC	3 cut(s)	573, 591, 790
DdeI	CTNAG	5 cut(s)	175, 428, 809, 1008, 1094
Eco24I	GRGCYC	2 cut(s)	16, 778
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRII	CCWGG	1 cut(s)	373
EcoT38I	GRGCYC	2 cut(s)	16, 778
Esp3I	CGTCTC	1 cut(s)	178
FbaI	TGATCA	6 cut(s)	88, 442, 451, 505, 1185, 1216
Fnu4HI	GCNGC	1 cut(s)	1087
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	2 cut(s)	16, 778
Fsp4HI	GCNGC	1 cut(s)	1087
FspBI	CTAG	5 cut(s)	62, 212, 278, 402, 594
GlaI	GCGC	1 cut(s)	746
GluI	GCNGC	1 cut(s)	1087
GsuI	CTGGAG	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	1167
HhaI	GCGC	1 cut(s)	747
Hin6I	GCGC	1 cut(s)	745
HinP1I	GCGC	1 cut(s)	745
HincII	GTYRAC	1 cut(s)	344
HindII	GTYRAC	1 cut(s)	344
HinfI	GANTC	2 cut(s)	260, 982
HpaII	CCGG	1 cut(s)	1167
HphI	GGTGA	2 cut(s)	265, 1156
Hpy166II	GTNNAC	3 cut(s)	336, 344, 533
Hpy188I	TCNGA	6 cut(s)	442, 469, 588, 691, 1060, 1095
Hpy188III	TCNNGA	4 cut(s)	86, 140, 449, 530
Hpy8I	GTNNAC	3 cut(s)	336, 344, 533
Hpy99I	CGWCG	3 cut(s)	136, 886, 1157
HpyAV	CCTTC	3 cut(s)	447, 911, 1204
HpyCH4IV	ACGT	2 cut(s)	171, 1152
HpyCH4V	TGCA	7 cut(s)	168, 634, 766, 851, 1023, 1032, 1243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1029, 1147
HpyF3I	CTNAG	5 cut(s)	175, 428, 809, 1008, 1094
HpySE526I	ACGT	2 cut(s)	171, 1152
HspAI	GCGC	1 cut(s)	745
Ksp22I	TGATCA	6 cut(s)	88, 442, 451, 505, 1185, 1216
LmnI	GCTCC	2 cut(s)	19, 996
LweI	GCATC	4 cut(s)	228, 673, 739, 1230
MaeI	CTAG	5 cut(s)	62, 212, 278, 402, 594
MaeII	ACGT	2 cut(s)	171, 1152
MaeIII	GTNAC	4 cut(s)	39, 66, 313, 377
MboII	GAAGA	6 cut(s)	90, 92, 315, 648, 835, 991
MflI	RGATCY	2 cut(s)	82, 583
MhlI	GDGCHC	3 cut(s)	16, 778, 1152
MluCI	AATT	8 cut(s)	22, 246, 501, 644, 723, 754, 887, 947
MlyI	GAGTC	1 cut(s)	269
MnlI	CCTC	9 cut(s)	133, 166, 173, 233, 670, 765, 848, 987, 1020
MroXI	GAANNNNTTC	3 cut(s)	192, 901, 1043
MslI	CAYNNNNRTG	1 cut(s)	783
MspI	CCGG	1 cut(s)	1167
MspR9I	CCNGG	2 cut(s)	375, 1168
Mva1269I	GAATGC	1 cut(s)	768
MvaI	CCWGG	1 cut(s)	375
MvnI	CGCG	3 cut(s)	747, 944, 1157
MwoI	GCNNNNNNNGC	2 cut(s)	1029, 1147
NciI	CCSGG	1 cut(s)	1168
NlaIV	GGNNCC	4 cut(s)	15, 138, 932, 998
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	3 cut(s)	342, 632, 879
NspV	TTCGAA	1 cut(s)	659
PciI	ACATGT	1 cut(s)	338
PcsI	WCGNNNNNNNCGW	1 cut(s)	584
PctI	GAATGC	1 cut(s)	768
PdmI	GAANNNNTTC	3 cut(s)	192, 901, 1043
PfeI	GAWTC	1 cut(s)	982
PkrI	GCNGC	1 cut(s)	1088
PleI	GAGTC	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	268
PscI	ACATGT	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	373
PspEI	GGTNACC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	373
PspN4I	GGNNCC	4 cut(s)	15, 138, 932, 998
PspPI	GGNCC	1 cut(s)	352
PsuI	RGATCY	2 cut(s)	82, 583
RsaI	GTAC	3 cut(s)	574, 592, 791
RsaNI	GTAC	3 cut(s)	573, 591, 790
RseI	CAYNNNNRTG	1 cut(s)	783
SatI	GCNGC	1 cut(s)	1087
Sau96I	GGNCC	1 cut(s)	352
ScaI	AGTACT	1 cut(s)	592
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	2 cut(s)	375, 1168
SduI	GDGCHC	3 cut(s)	16, 778, 1152
SfaNI	GCATC	4 cut(s)	228, 673, 739, 1230
SfuI	TTCGAA	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	783
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	8 cut(s)	22, 246, 501, 644, 723, 754, 887, 947
SsiI	CCGC	3 cut(s)	486, 911, 1086
SspMI	CTAG	5 cut(s)	62, 212, 278, 402, 594
StyD4I	CCNGG	2 cut(s)	373, 1166
TaiI	ACGT	2 cut(s)	174, 1155
TaqI	TCGA	6 cut(s)	111, 543, 659, 881, 965, 1231
TasI	AATT	8 cut(s)	22, 246, 501, 644, 723, 754, 887, 947
TatI	WGTACW	2 cut(s)	590, 789
TauI	GCSGC	1 cut(s)	1089
TfiI	GAWTC	1 cut(s)	982
TscAI	CASTG	2 cut(s)	1088, 1109
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	5 cut(s)	90, 93, 185, 836, 1098
TspRI	CASTG	2 cut(s)	1088, 1109
XapI	RAATTY	4 cut(s)	246, 723, 754, 947
XceI	RCATGY	3 cut(s)	342, 632, 879
XmnI	GAANNNNTTC	3 cut(s)	192, 901, 1043
XspI	CTAG	5 cut(s)	62, 212, 278, 402, 594
ZrmI	AGTACT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.