Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016106

Physical Location & Seq

Genomic Coordinates Reverse (-)

23848940 .. 23850106

Gene Structure 1167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTACATGACGGATCGAGATGCAGTTTCGTCGTTTTCACTCGAACCAAACTCATCATCATCTGGTGCAGTACTATCCCAAGATCAGAATCACTCAACTTCTCTTCTCTATAGCCTCTCCGTCCTCAAGGAGAAAGTTCATCAAGCGAAATCGCTCGTCGGCGTGCTTATCGCTCCGGCAGATCATCATCAAAGTCAACAACAACAGCTTCCAGAGTCAACGACCATGGGAGCCATGGCGAGCATGAGCAATGTCATCCAAGAAATTATCGTCACGGCGTCTTCAATGATGTTCACTTGCCAGCAGATGTCCCTTGTTGCTCCAGGTAACGATACAAGATCTGAACCAAACTTTACTATTAGTACTGCTGGTCGTAGTAACACTAGAGACGCTGGTTTCTATCCAACACATGATCAAACACTCGATTGGTTTAGTACTGAGAGCTACAACGATTGTCTTCCTAGGGATGTGATCAGTAGGAGTCATAGACAGGTCGAAACGAAAGAGTTGCCTCCGAGAGTTCAAAGAAACAATGCGTTACAGGTAGAGAATCCTCCACCAGAAAACTCGAGCTACGACATTATTGAGTTGGATGCTGCTGATTTGTTGGCTAAGTACACTCATTACTGCCAAGTTTGCGGGAAAGGGTTCAAGCGTGATGCCAACTTGAGAATGCACATGAGGGCTCATGGGGATGAATACAAGACTAGCATTGCTTTGAGCAACCCCTTGAAGAACAACAATATGAACAGTGCAATGAACGTAAATGGATCGAGCAATGCTGAGTCTTCAATGAAATTGCCAAGGAAATATTCATGTCCTCAAGAAGGGTGCAGGTGGAACCAAAAGCACGCAAAATTCCAGCCTCTCAAGTCCATGATCTGCGTGAAGAATCACTACAAGAGGAGCCATTGTCCGAAAATGTACGTATGCAAGAGGTGCAACAGGAAGCAGTTTTCGGTGTTGTCTGATCTAAGAACACATGAGAAGCACTGTGGGGATCTAAGGTGGCAATGCTCTTGCGGAACCACATTTTCCAGGAAAGATAAGCTTATGGGTCATGTTGCTTTGTTCGTTGGACACACACCAGTTATAATCAATTCTAATTTTCCCATTAGGCATGGGAGAGCTGAGAGCCAAGCTGCAGCCGGCGGCCTGATGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

389

Amino Acids

43.47

Weight (kDa)

8.96

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	271 - 305	4.2e-22	STOP2-like, C2H2-type zinc finger
C2CH-3rd_BIRD-IDD	PF22995	309 - 333	6.1e-06	BIRD-IDD transcription factor, third C2HC zinc finger
zf-C2H2_STOP2_C	PF23118	336 - 365	3.2e-17	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016106)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22890
fragaria_vesca	FvH4_3g30580
malus_domestica	MD03G1128200.v1.1 MD11G1149000.v1.1
prunus_persica	Prupe.6G113300_v2.0.a1
pyrus_communis	pycom11g12190
rosa_chinensis	RchiOBHm_Chr5g0056621
rosa_laevigata	RLG00000035112
rosa_multiflora	Rmu_sc0004101.1_g000040 Rmu_sc0008982.1_g000004
rosa_rugosa	Rorug05G0301000
rosa_samantha	Rh5BG383000 Rh5CG406200 Rh5DG395800
rosa_wichuraiana	Rw5G034790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1094
AarI	CACCTGC	1 cut(s)	825
Acc36I	ACCTGC	1 cut(s)	825
AciI	CCGC	3 cut(s)	639, 1023, 1152
AclWI	GGATC	3 cut(s)	21, 778, 1008
AcsI	RAATTY	1 cut(s)	857
AcyI	GRCGYC	1 cut(s)	278
AfaI	GTAC	6 cut(s)	5, 72, 364, 436, 617, 926
AfiI	CCNNNNNNNGG	1 cut(s)	827
AgsI	TTSAA	5 cut(s)	285, 524, 652, 733, 792
AjnI	CCWGG	2 cut(s)	322, 1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	796, 828
AluBI	AGCT	6 cut(s)	208, 444, 573, 1051, 1130, 1142
AluI	AGCT	6 cut(s)	208, 444, 573, 1051, 1130, 1142
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	3 cut(s)	21, 778, 1008
Ama87I	CYCGRG	1 cut(s)	568
AoxI	GGCC	1 cut(s)	1153
ApeKI	GCWGC	3 cut(s)	596, 1142, 1145
ApoI	RAATTY	1 cut(s)	857
Asp700I	GAANNNNTTC	1 cut(s)	647
AspA2I	CCTAGG	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	568
AvrII	CCTAGG	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	688
BarI	GAAGNNNNNNTAC	2 cut(s)	881, 913
BbsI	GAAGAC	3 cut(s)	273, 449, 780
BbvI	GCAGC	3 cut(s)	583, 1129, 1157
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	4 cut(s)	12, 46, 490, 524
BciT130I	CCWGG	2 cut(s)	324, 1039
BclI	TGATCA	2 cut(s)	412, 471
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	3 cut(s)	384, 462, 708
BfmI	CTRYAG	2 cut(s)	109, 1143
BfuAI	ACCTGC	1 cut(s)	825
BglII	AGATCT	1 cut(s)	338
BisI	GCNGC	4 cut(s)	597, 1143, 1146, 1153
BlnI	CCTAGG	1 cut(s)	461
BlsI	GCNGC	4 cut(s)	598, 1144, 1147, 1154
BmcAI	AGTACT	3 cut(s)	72, 364, 436
Bme1390I	CCNGG	2 cut(s)	324, 1039
BmeT110I	CYCGRG	1 cut(s)	568
BmiI	GGNNCC	4 cut(s)	232, 842, 908, 1027
BmrFI	CCNGG	2 cut(s)	324, 1039
BmsI	GCATC	4 cut(s)	10, 583, 649, 1149
BpiI	GAAGAC	3 cut(s)	273, 449, 780
BpmI	CTGGAG	1 cut(s)	306
BpuEI	CTTGAG	4 cut(s)	110, 688, 807, 854
BsaAI	YACGTR	1 cut(s)	928
BsaBI	GATNNNNATC	2 cut(s)	87, 186
BsaHI	GRCGYC	1 cut(s)	278
BsaJI	CCNNGG	4 cut(s)	225, 234, 461, 803
BsaXI	ACNNNNNCTCC	2 cut(s)	898, 928
Bsc4I	CCNNNNNNNGG	1 cut(s)	827
Bse118I	RCCGGY	1 cut(s)	1148
Bse1I	ACTGG	1 cut(s)	1088
Bse3DI	GCAATG	5 cut(s)	256, 711, 762, 784, 1019
Bse8I	GATNNNNATC	2 cut(s)	87, 186
BseBI	CCWGG	2 cut(s)	324, 1039
BseDI	CCNNGG	4 cut(s)	225, 234, 461, 803
BseGI	GGATG	4 cut(s)	255, 472, 598, 700
BseJI	GATNNNNATC	2 cut(s)	87, 186
BseLI	CCNNNNNNNGG	1 cut(s)	827
BseMI	GCAATG	5 cut(s)	256, 711, 762, 784, 1019
BseMII	CTCAG	3 cut(s)	429, 774, 1122
BseNI	ACTGG	1 cut(s)	1088
BseRI	GAGGAG	1 cut(s)	919
BseXI	GCAGC	3 cut(s)	583, 1129, 1157
BsgI	GTGCAG	2 cut(s)	87, 853
BshFI	GGCC	1 cut(s)	1155
BsiHKCI	CYCGRG	1 cut(s)	568
BsiSI	CCGG	2 cut(s)	176, 1149
BslFI	GGGAC	1 cut(s)	295
BslI	CCNNNNNNNGG	1 cut(s)	827
BsmAI	GTCTC	1 cut(s)	381
BsmBI	CGTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	295
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	1 cut(s)	1155
BsoBI	CYCGRG	1 cut(s)	568
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp1407I	TGTACA	1 cut(s)	3
Bsp19I	CCATGG	2 cut(s)	225, 234
BspACI	CCGC	3 cut(s)	639, 1023, 1152
BspANI	GGCC	1 cut(s)	1155
BspCNI	CTCAG	3 cut(s)	430, 775, 1123
BspLI	GGNNCC	4 cut(s)	232, 842, 908, 1027
BspMAI	CTGCAG	1 cut(s)	1147
BspMI	ACCTGC	1 cut(s)	825
BspPI	GGATC	3 cut(s)	21, 778, 1008
BsrDI	GCAATG	5 cut(s)	256, 711, 762, 784, 1019
BsrFI	RCCGGY	1 cut(s)	1148
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	1088
BssAI	RCCGGY	1 cut(s)	1148
BssECI	CCNNGG	4 cut(s)	225, 234, 461, 803
BssNI	GRCGYC	1 cut(s)	278
BssT1I	CCWWGG	4 cut(s)	225, 234, 461, 803
Bst2UI	CCWGG	2 cut(s)	324, 1039
Bst4CI	ACNGT	2 cut(s)	752, 995
Bst6I	CTCTTC	1 cut(s)	108
BstACI	GRCGYC	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	939
BstAUI	TGTACA	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	928
BstC8I	GCNNGC	5 cut(s)	164, 241, 302, 852, 1150
BstDEI	CTNAG	6 cut(s)	438, 612, 783, 974, 1004, 1131
BstDSI	CCRYGG	2 cut(s)	225, 234
BstENI	CCTNNNNNAGG	1 cut(s)	825
BstF5I	GGATG	4 cut(s)	255, 472, 598, 700
BstMAI	GTCTC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	2 cut(s)	636, 939
BstNI	CCWGG	2 cut(s)	324, 1039
BstSCI	CCNGG	2 cut(s)	322, 1037
BstSFI	CTRYAG	2 cut(s)	109, 1143
BstSNI	TACGTA	1 cut(s)	928
BstV1I	GCAGC	3 cut(s)	583, 1129, 1157
BstV2I	GAAGAC	3 cut(s)	273, 449, 780
BstX2I	RGATCY	2 cut(s)	338, 1000
BstYI	RGATCY	2 cut(s)	338, 1000
BsuRI	GGCC	1 cut(s)	1155
BtgI	CCRYGG	2 cut(s)	225, 234
BtsCI	GGATG	4 cut(s)	255, 472, 598, 700
BtsIMutI	CAGTG	2 cut(s)	757, 991
BveI	ACCTGC	1 cut(s)	825
Cac8I	GCNNGC	5 cut(s)	164, 241, 302, 852, 1150
Cfr10I	RCCGGY	1 cut(s)	1148
CseI	GACGC	2 cut(s)	267, 398
Csp6I	GTAC	6 cut(s)	4, 71, 363, 435, 616, 925
CviQI	GTAC	6 cut(s)	4, 71, 363, 435, 616, 925
DdeI	CTNAG	6 cut(s)	438, 612, 783, 974, 1004, 1131
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco105I	TACGTA	1 cut(s)	928
Eco130I	CCWWGG	4 cut(s)	225, 234, 461, 803
Eco24I	GRGCYC	1 cut(s)	688
Eco88I	CYCGRG	1 cut(s)	568
EcoNI	CCTNNNNNAGG	1 cut(s)	825
EcoRII	CCWGG	2 cut(s)	322, 1037
EcoT14I	CCWWGG	4 cut(s)	225, 234, 461, 803
EcoT38I	GRGCYC	1 cut(s)	688
ErhI	CCWWGG	4 cut(s)	225, 234, 461, 803
Esp3I	CGTCTC	1 cut(s)	381
FalI	AAGNNNNNCTT	2 cut(s)	1035, 1067
FaqI	GGGAC	1 cut(s)	295
FauI	CCCGC	1 cut(s)	632
FbaI	TGATCA	2 cut(s)	412, 471
Fnu4HI	GCNGC	4 cut(s)	597, 1143, 1146, 1153
FokI	GGATG	4 cut(s)	242, 479, 605, 707
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	4 cut(s)	597, 1143, 1146, 1153
FspBI	CTAG	3 cut(s)	384, 462, 708
GluI	GCNGC	4 cut(s)	597, 1143, 1146, 1153
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	1155
HapII	CCGG	2 cut(s)	176, 1149
HgaI	GACGC	2 cut(s)	267, 398
Hin1I	GRCGYC	1 cut(s)	278
HincII	GTYRAC	2 cut(s)	197, 219
HindII	GTYRAC	2 cut(s)	197, 219
HindIII	AAGCTT	1 cut(s)	1049
HinfI	GANTC	6 cut(s)	88, 215, 481, 550, 785, 892
HpaII	CCGG	2 cut(s)	176, 1149
Hpy166II	GTNNAC	4 cut(s)	197, 219, 294, 618
Hpy188I	TCNGA	5 cut(s)	87, 343, 516, 918, 970
Hpy188III	TCNNGA	3 cut(s)	17, 212, 824
Hpy8I	GTNNAC	4 cut(s)	197, 219, 294, 618
Hpy99I	CGWCG	2 cut(s)	34, 161
HpyAV	CCTTC	1 cut(s)	821
HpyCH4III	ACNGT	2 cut(s)	752, 995
HpyCH4IV	ACGT	2 cut(s)	762, 927
HpyCH4V	TGCA	9 cut(s)	23, 68, 676, 755, 834, 933, 942, 1145, 1162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	636, 939
HpyF3I	CTNAG	6 cut(s)	438, 612, 783, 974, 1004, 1131
HpySE526I	ACGT	2 cut(s)	762, 927
Hsp92I	GRCGYC	1 cut(s)	278
KroI	GCCGGC	1 cut(s)	1148
KroNI	GCCGGC	1 cut(s)	1150
Ksp22I	TGATCA	2 cut(s)	412, 471
LmnI	GCTCC	4 cut(s)	178, 230, 325, 906
Lsp1109I	GCAGC	3 cut(s)	583, 1129, 1157
LweI	GCATC	4 cut(s)	10, 583, 649, 1149
MaeI	CTAG	3 cut(s)	384, 462, 708
MaeII	ACGT	2 cut(s)	762, 927
MaeIII	GTNAC	4 cut(s)	271, 326, 377, 537
MboII	GAAGA	6 cut(s)	95, 273, 449, 745, 780, 901
MflI	RGATCY	2 cut(s)	338, 1000
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	5 cut(s)	264, 797, 857, 1099, 1105
MlyI	GAGTC	3 cut(s)	224, 490, 794
MmeI	TCCRAC	3 cut(s)	428, 570, 1057
MnlI	CCTC	9 cut(s)	125, 134, 522, 564, 675, 831, 876, 897, 930
MroNI	GCCGGC	1 cut(s)	1148
MroXI	GAANNNNTTC	1 cut(s)	647
MslI	CAYNNNNRTG	1 cut(s)	693
MspI	CCGG	2 cut(s)	176, 1149
MspR9I	CCNGG	2 cut(s)	324, 1039
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	2 cut(s)	324, 1039
MwoI	GCNNNNNNNGC	2 cut(s)	636, 939
NaeI	GCCGGC	1 cut(s)	1150
NcoI	CCATGG	2 cut(s)	225, 234
NgoMIV	GCCGGC	1 cut(s)	1148
NlaIV	GGNNCC	4 cut(s)	232, 842, 908, 1027
NmuCI	GTSAC	1 cut(s)	271
PaeR7I	CTCGAG	1 cut(s)	568
PaqCI	CACCTGC	1 cut(s)	825
PctI	GAATGC	1 cut(s)	678
PdiI	GCCGGC	1 cut(s)	1150
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	3 cut(s)	88, 550, 892
PfoI	TCCNGGA	1 cut(s)	1037
PkrI	GCNGC	4 cut(s)	598, 1144, 1147, 1154
PleI	GAGTC	3 cut(s)	223, 489, 793
PpsI	GAGTC	3 cut(s)	223, 489, 793
Ppu21I	YACGTR	1 cut(s)	928
PsiI	TTATAA	1 cut(s)	1094
Psp6I	CCWGG	2 cut(s)	322, 1037
PspGI	CCWGG	2 cut(s)	322, 1037
PspN4I	GGNNCC	4 cut(s)	232, 842, 908, 1027
PspXI	VCTCGAGB	1 cut(s)	568
PstI	CTGCAG	1 cut(s)	1147
PsuI	RGATCY	2 cut(s)	338, 1000
RsaI	GTAC	6 cut(s)	5, 72, 364, 436, 617, 926
RsaNI	GTAC	6 cut(s)	4, 71, 363, 435, 616, 925
RseI	CAYNNNNRTG	1 cut(s)	693
SatI	GCNGC	4 cut(s)	597, 1143, 1146, 1153
ScaI	AGTACT	3 cut(s)	72, 364, 436
SchI	GAGTC	3 cut(s)	224, 490, 794
ScrFI	CCNGG	2 cut(s)	324, 1039
SduI	GDGCHC	1 cut(s)	688
SfaNI	GCATC	4 cut(s)	10, 583, 649, 1149
SfcI	CTRYAG	2 cut(s)	109, 1143
Sfr274I	CTCGAG	1 cut(s)	568
SlaI	CTCGAG	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	5 cut(s)	125, 568, 667, 822, 869
SmoI	CTYRAG	5 cut(s)	125, 568, 667, 822, 869
SnaBI	TACGTA	1 cut(s)	928
Sse9I	AATT	5 cut(s)	264, 797, 857, 1099, 1105
SsiI	CCGC	3 cut(s)	639, 1023, 1152
SspI	AATATT	1 cut(s)	812
SspMI	CTAG	3 cut(s)	384, 462, 708
StyD4I	CCNGG	2 cut(s)	322, 1037
StyI	CCWWGG	4 cut(s)	225, 234, 461, 803
TaaI	ACNGT	2 cut(s)	752, 995
TaiI	ACGT	2 cut(s)	765, 930
TaqI	TCGA	6 cut(s)	16, 42, 423, 495, 569, 773
TasI	AATT	5 cut(s)	264, 797, 857, 1099, 1105
TatI	WGTACW	5 cut(s)	3, 70, 362, 434, 615
TauI	GCSGC	1 cut(s)	1155
TfiI	GAWTC	3 cut(s)	88, 550, 892
TscAI	CASTG	2 cut(s)	757, 998
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	3 cut(s)	596, 1142, 1145
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	6 cut(s)	128, 711, 761, 773, 804, 809
TspGWI	ACGGA	2 cut(s)	26, 109
TspRI	CASTG	2 cut(s)	757, 998
XagI	CCTNNNNNAGG	1 cut(s)	825
XapI	RAATTY	1 cut(s)	857
XcmI	CCANNNNNNNNNTGG	1 cut(s)	232
XhoI	CTCGAG	1 cut(s)	568
XmaJI	CCTAGG	1 cut(s)	461
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	3 cut(s)	384, 462, 708
ZrmI	AGTACT	3 cut(s)	72, 364, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.