Protein of unknown function (DUF1604)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G23080 AT5G23080 |
| fragaria_vesca | FvH4_5g12911 FvH4_5g12911 |
| malus_domestica | MD06G1209200.v1.1 MD14G1219700.v1.1 |
| prunus_persica | Prupe.5G214300_v2.0.a1 |
| pyrus_communis | pycom06g18680 pycom14g18200 |
| rosa_chinensis | RchiOBHm_Chr7g0184311 |
| rosa_laevigata | RLG00000004987 |
| rosa_multiflora | Rmu_co8385771.1_g000001 Rmu_co8404991.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00269740 |
| rosa_samantha | Rh7AG081200 Rh7BG066100 Rh7CG066400 Rh7DG066100 |
| rosa_wichuraiana | Rw7G005420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1996 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2716 |
| Acc36I | ACCTGC | 1 cut(s) | 1996 |
| AccB1I | GGYRCC | 1 cut(s) | 2323 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1043, 2210 |
| AccI | GTMKAC | 1 cut(s) | 1875 |
| AccII | CGCG | 2 cut(s) | 51, 1996 |
| AccIII | TCCGGA | 1 cut(s) | 1174 |
| AciI | CCGC | 8 cut(s) | 320, 394, 517, 1248, 1994, 2249, 2650, 2767 |
| AclI | AACGTT | 1 cut(s) | 1948 |
| AclWI | GGATC | 6 cut(s) | 223, 737, 1272, 1601, 1958, 2638 |
| AcsI | RAATTY | 4 cut(s) | 678, 764, 1057, 1124 |
| AcuI | CTGAAG | 5 cut(s) | 666, 1811, 2133, 2205, 2466 |
| AcvI | CACGTG | 1 cut(s) | 1442 |
| AcyI | GRCGYC | 1 cut(s) | 1924 |
| AfaI | GTAC | 3 cut(s) | 1419, 1669, 2082 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 860, 881, 1043, 1248, 1973, 2210, 2617 |
| AflIII | ACRYGT | 1 cut(s) | 1439 |
| AgsI | TTSAA | 4 cut(s) | 531, 1483, 1600, 2401 |
| AjiI | CACGTC | 1 cut(s) | 2060 |
| AjnI | CCWGG | 3 cut(s) | 439, 1036, 2482 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 831, 863 |
| AleI | CACNNNNGTG | 1 cut(s) | 1868 |
| Alw21I | GWGCWC | 2 cut(s) | 353, 895 |
| Alw26I | GTCTC | 5 cut(s) | 635, 1413, 2087, 2137, 2781 |
| AlwI | GGATC | 6 cut(s) | 223, 737, 1272, 1601, 1958, 2638 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 89, 1586 |
| Ama87I | CYCGRG | 1 cut(s) | 1710 |
| Aor13HI | TCCGGA | 1 cut(s) | 1174 |
| AoxI | GGCC | 4 cut(s) | 151, 425, 442, 1113 |
| ApoI | RAATTY | 4 cut(s) | 678, 764, 1057, 1124 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1595, 2581 |
| AspLEI | GCGC | 1 cut(s) | 51 |
| AspS9I | GGNCC | 5 cut(s) | 443, 851, 1114, 1133, 2709 |
| AsuC2I | CCSGG | 3 cut(s) | 876, 1117, 2394 |
| AsuHPI | GGTGA | 4 cut(s) | 148, 677, 1543, 1923 |
| AvaI | CYCGRG | 1 cut(s) | 1710 |
| AvaII | GGWCC | 3 cut(s) | 851, 1133, 2709 |
| AxyI | CCTNAGG | 1 cut(s) | 2527 |
| BaeGI | GKGCMC | 1 cut(s) | 1717 |
| BanI | GGYRCC | 1 cut(s) | 2323 |
| BanII | GRGCYC | 2 cut(s) | 235, 353 |
| BbrPI | CACGTG | 1 cut(s) | 1442 |
| BbsI | GAAGAC | 4 cut(s) | 972, 1817, 2426, 2712 |
| Bbv12I | GWGCWC | 2 cut(s) | 353, 895 |
| BccI | CCATC | 3 cut(s) | 436, 502, 507 |
| BceAI | ACGGC | 2 cut(s) | 138, 393 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 446, 480, 1208, 1242, 1481, 1515, 1796, 1830 |
| BciT130I | CCWGG | 3 cut(s) | 441, 1038, 2484 |
| BciVI | GTATCC | 2 cut(s) | 1908, 2029 |
| BclI | TGATCA | 1 cut(s) | 946 |
| BcnI | CCSGG | 3 cut(s) | 876, 1117, 2394 |
| BcoDI | GTCTC | 5 cut(s) | 635, 1413, 2087, 2137, 2781 |
| BfaI | CTAG | 7 cut(s) | 302, 573, 1272, 2291, 2312, 2640, 2664 |
| BfmI | CTRYAG | 4 cut(s) | 1066, 1191, 1431, 1740 |
| BfuAI | ACCTGC | 1 cut(s) | 1996 |
| BfuI | GTATCC | 2 cut(s) | 1908, 2029 |
| BglII | AGATCT | 3 cut(s) | 721, 782, 2636 |
| Bme1390I | CCNGG | 6 cut(s) | 441, 876, 1038, 1117, 2394, 2484 |
| Bme18I | GGWCC | 3 cut(s) | 851, 1133, 2709 |
| BmeT110I | CYCGRG | 1 cut(s) | 1710 |
| BmgBI | CACGTC | 1 cut(s) | 2060 |
| BmgT120I | GGNCC | 5 cut(s) | 443, 851, 1114, 1133, 2709 |
| BmiI | GGNNCC | 5 cut(s) | 164, 234, 853, 1516, 2325 |
| BmrFI | CCNGG | 6 cut(s) | 441, 876, 1038, 1117, 2394, 2484 |
| BmsI | GCATC | 4 cut(s) | 547, 1573, 2060, 2710 |
| BoxI | GACNNNNGTC | 1 cut(s) | 956 |
| BpiI | GAAGAC | 4 cut(s) | 972, 1817, 2426, 2712 |
| BpmI | CTGGAG | 5 cut(s) | 291, 453, 1530, 1839, 1887 |
| BpuEI | CTTGAG | 4 cut(s) | 917, 1160, 1554, 1625 |
| BpuMI | CCSGG | 3 cut(s) | 876, 1117, 2394 |
| BsaAI | YACGTR | 2 cut(s) | 1442, 1667 |
| BsaBI | GATNNNNATC | 4 cut(s) | 945, 1200, 2196, 2635 |
| BsaHI | GRCGYC | 1 cut(s) | 1924 |
| BsaI | GGTCTC | 1 cut(s) | 2137 |
| BsaJI | CCNNGG | 2 cut(s) | 166, 1746 |
| BsaWI | WCCGGW | 1 cut(s) | 1174 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 860, 881, 1043, 1248, 1973, 2210, 2617 |
| Bse118I | RCCGGY | 1 cut(s) | 2268 |
| Bse1I | ACTGG | 5 cut(s) | 184, 470, 549, 1522, 1870 |
| Bse21I | CCTNAGG | 1 cut(s) | 2527 |
| Bse3DI | GCAATG | 2 cut(s) | 997, 1466 |
| Bse8I | GATNNNNATC | 4 cut(s) | 945, 1200, 2196, 2635 |
| BseAI | TCCGGA | 1 cut(s) | 1174 |
| BseBI | CCWGG | 3 cut(s) | 441, 1038, 2484 |
| BseDI | CCNNGG | 2 cut(s) | 166, 1746 |
| BseGI | GGATG | 3 cut(s) | 518, 922, 2597 |
| BseJI | GATNNNNATC | 4 cut(s) | 945, 1200, 2196, 2635 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 860, 881, 1043, 1248, 1973, 2210, 2617 |
| BseMI | GCAATG | 2 cut(s) | 997, 1466 |
| BseMII | CTCAG | 6 cut(s) | 396, 630, 995, 2061, 2541, 2754 |
| BseNI | ACTGG | 5 cut(s) | 184, 470, 549, 1522, 1870 |
| BseRI | GAGGAG | 5 cut(s) | 1161, 1176, 1370, 2429, 2557 |
| BseSI | GKGCMC | 1 cut(s) | 1717 |
| BseYI | CCCAGC | 3 cut(s) | 89, 194, 228 |
| BsgI | GTGCAG | 1 cut(s) | 2040 |
| Bsh1236I | CGCG | 2 cut(s) | 51, 1996 |
| BshFI | GGCC | 4 cut(s) | 153, 427, 444, 1115 |
| BshNI | GGYRCC | 1 cut(s) | 2323 |
| BsiHKAI | GWGCWC | 2 cut(s) | 353, 895 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1710 |
| BsiSI | CCGG | 7 cut(s) | 70, 875, 1117, 1175, 2033, 2269, 2394 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 860, 881, 1043, 1248, 1973, 2210, 2617 |
| BsmAI | GTCTC | 5 cut(s) | 635, 1413, 2087, 2137, 2781 |
| BsmI | GAATGC | 1 cut(s) | 581 |
| BsnI | GGCC | 4 cut(s) | 153, 427, 444, 1115 |
| Bso31I | GGTCTC | 1 cut(s) | 2137 |
| BsoBI | CYCGRG | 1 cut(s) | 1710 |
| Bsp1286I | GDGCHC | 4 cut(s) | 235, 353, 895, 1717 |
| Bsp13I | TCCGGA | 1 cut(s) | 1174 |
| Bsp19I | CCATGG | 1 cut(s) | 166 |
| BspACI | CCGC | 8 cut(s) | 320, 394, 517, 1248, 1994, 2249, 2650, 2767 |
| BspANI | GGCC | 4 cut(s) | 153, 427, 444, 1115 |
| BspCNI | CTCAG | 6 cut(s) | 397, 631, 996, 2062, 2540, 2753 |
| BspEI | TCCGGA | 1 cut(s) | 1174 |
| BspFNI | CGCG | 2 cut(s) | 51, 1996 |
| BspHI | TCATGA | 1 cut(s) | 1327 |
| BspLI | GGNNCC | 5 cut(s) | 164, 234, 853, 1516, 2325 |
| BspMAI | CTGCAG | 3 cut(s) | 1195, 1435, 1744 |
| BspMI | ACCTGC | 1 cut(s) | 1996 |
| BspPI | GGATC | 6 cut(s) | 223, 737, 1272, 1601, 1958, 2638 |
| BspQI | GCTCTTC | 1 cut(s) | 2100 |
| BspT107I | GGYRCC | 1 cut(s) | 2323 |
| BspTNI | GGTCTC | 1 cut(s) | 2137 |
| BsrDI | GCAATG | 2 cut(s) | 997, 1466 |
| BsrFI | RCCGGY | 1 cut(s) | 2268 |
| BsrI | ACTGG | 5 cut(s) | 184, 470, 549, 1522, 1870 |
| BssAI | RCCGGY | 1 cut(s) | 2268 |
| BssECI | CCNNGG | 2 cut(s) | 166, 1746 |
| BssNI | GRCGYC | 1 cut(s) | 1924 |
| BssT1I | CCWWGG | 1 cut(s) | 166 |
| Bst2UI | CCWGG | 3 cut(s) | 441, 1038, 2484 |
| Bst4CI | ACNGT | 9 cut(s) | 211, 240, 342, 1070, 1162, 1325, 1417, 2041, 2733 |
| Bst6I | CTCTTC | 5 cut(s) | 1905, 2100, 2331, 2666, 2771 |
| BstACI | GRCGYC | 1 cut(s) | 1924 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 724, 1583 |
| BstBAI | YACGTR | 2 cut(s) | 1442, 1667 |
| BstDSI | CCRYGG | 1 cut(s) | 166 |
| BstF5I | GGATG | 3 cut(s) | 518, 922, 2597 |
| BstFNI | CGCG | 2 cut(s) | 51, 1996 |
| BstHHI | GCGC | 1 cut(s) | 51 |
| BstMAI | GTCTC | 5 cut(s) | 635, 1413, 2087, 2137, 2781 |
| BstNI | CCWGG | 3 cut(s) | 441, 1038, 2484 |
| BstNSI | RCATGY | 4 cut(s) | 404, 758, 793, 1699 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 956 |
| BstSCI | CCNGG | 6 cut(s) | 439, 874, 1036, 1115, 2392, 2482 |
| BstSFI | CTRYAG | 4 cut(s) | 1066, 1191, 1431, 1740 |
| BstSLI | GKGCMC | 1 cut(s) | 1717 |
| BstSNI | TACGTA | 1 cut(s) | 1667 |
| BstUI | CGCG | 2 cut(s) | 51, 1996 |
| BstV2I | GAAGAC | 4 cut(s) | 972, 1817, 2426, 2712 |
| BstX2I | RGATCY | 4 cut(s) | 721, 782, 1264, 2636 |
| BstYI | RGATCY | 4 cut(s) | 721, 782, 1264, 2636 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2527 |
| BsuI | GTATCC | 2 cut(s) | 1908, 2029 |
| BsuRI | GGCC | 4 cut(s) | 153, 427, 444, 1115 |
| BtgI | CCRYGG | 1 cut(s) | 166 |
| BtgZI | GCGATG | 1 cut(s) | 2687 |
| BtrI | CACGTC | 1 cut(s) | 2060 |
| BtsCI | GGATG | 3 cut(s) | 518, 922, 2597 |
| BtsIMutI | CAGTG | 3 cut(s) | 338, 1863, 2046 |
| BveI | ACCTGC | 1 cut(s) | 1996 |
| CaiI | CAGNNNCTG | 2 cut(s) | 89, 1586 |
| CciI | TCATGA | 1 cut(s) | 1327 |
| CfoI | GCGC | 1 cut(s) | 51 |
| Cfr10I | RCCGGY | 1 cut(s) | 2268 |
| Cfr13I | GGNCC | 5 cut(s) | 443, 851, 1114, 1133, 2709 |
| CseI | GACGC | 1 cut(s) | 1913 |
| Csp6I | GTAC | 3 cut(s) | 1418, 1668, 2081 |
| CviQI | GTAC | 3 cut(s) | 1418, 1668, 2081 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2716 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2716 |
| Eam1104I | CTCTTC | 5 cut(s) | 1905, 2100, 2331, 2666, 2771 |
| EarI | CTCTTC | 5 cut(s) | 1905, 2100, 2331, 2666, 2771 |
| EciI | GGCGGA | 1 cut(s) | 335 |
| Ecl136II | GAGCTC | 1 cut(s) | 351 |
| Eco105I | TACGTA | 1 cut(s) | 1667 |
| Eco130I | CCWWGG | 1 cut(s) | 166 |
| Eco24I | GRGCYC | 2 cut(s) | 235, 353 |
| Eco31I | GGTCTC | 1 cut(s) | 2137 |
| Eco47I | GGWCC | 3 cut(s) | 851, 1133, 2709 |
| Eco53kI | GAGCTC | 1 cut(s) | 351 |
| Eco57I | CTGAAG | 5 cut(s) | 666, 1811, 2133, 2205, 2466 |
| Eco72I | CACGTG | 1 cut(s) | 1442 |
| Eco81I | CCTNAGG | 1 cut(s) | 2527 |
| Eco88I | CYCGRG | 1 cut(s) | 1710 |
| EcoICRI | GAGCTC | 1 cut(s) | 351 |
| EcoRI | GAATTC | 1 cut(s) | 1057 |
| EcoRII | CCWGG | 3 cut(s) | 439, 1036, 2482 |
| EcoT14I | CCWWGG | 1 cut(s) | 166 |
| EcoT38I | GRGCYC | 2 cut(s) | 235, 353 |
| ErhI | CCWWGG | 1 cut(s) | 166 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2153, 2185 |
| FauI | CCCGC | 3 cut(s) | 401, 1241, 2760 |
| FbaI | TGATCA | 1 cut(s) | 946 |
| FblI | GTMKAC | 1 cut(s) | 1875 |
| FokI | GGATG | 3 cut(s) | 525, 929, 2584 |
| FriOI | GRGCYC | 2 cut(s) | 235, 353 |
| FspBI | CTAG | 7 cut(s) | 302, 573, 1272, 2291, 2312, 2640, 2664 |
| GlaI | GCGC | 1 cut(s) | 50 |
| GsaI | CCCAGC | 3 cut(s) | 93, 198, 232 |
| GsuI | CTGGAG | 5 cut(s) | 291, 453, 1530, 1839, 1887 |
| HaeIII | GGCC | 4 cut(s) | 153, 427, 444, 1115 |
| HapII | CCGG | 7 cut(s) | 70, 875, 1117, 1175, 2033, 2269, 2394 |
| HgaI | GACGC | 1 cut(s) | 1913 |
| HhaI | GCGC | 1 cut(s) | 51 |
| Hin1I | GRCGYC | 1 cut(s) | 1924 |
| Hin6I | GCGC | 1 cut(s) | 49 |
| HinP1I | GCGC | 1 cut(s) | 49 |
| HincII | GTYRAC | 1 cut(s) | 1011 |
| HindII | GTYRAC | 1 cut(s) | 1011 |
| HindIII | AAGCTT | 1 cut(s) | 1767 |
| HpaI | GTTAAC | 1 cut(s) | 1011 |
| HpaII | CCGG | 7 cut(s) | 70, 875, 1117, 1175, 2033, 2269, 2394 |
| HphI | GGTGA | 4 cut(s) | 148, 677, 1543, 1923 |
| Hpy166II | GTNNAC | 4 cut(s) | 375, 1011, 1833, 1876 |
| Hpy8I | GTNNAC | 4 cut(s) | 375, 1011, 1833, 1876 |
| Hpy99I | CGWCG | 1 cut(s) | 2787 |
| HpyCH4III | ACNGT | 9 cut(s) | 211, 240, 342, 1070, 1162, 1325, 1417, 2041, 2733 |
| HpyCH4IV | ACGT | 6 cut(s) | 1029, 1441, 1666, 1895, 1948, 2059 |
| HpySE526I | ACGT | 6 cut(s) | 1029, 1441, 1666, 1895, 1948, 2059 |
| Hsp92I | GRCGYC | 1 cut(s) | 1924 |
| HspAI | GCGC | 1 cut(s) | 49 |
| Kpn2I | TCCGGA | 1 cut(s) | 1174 |
| Ksp22I | TGATCA | 1 cut(s) | 946 |
| KspAI | GTTAAC | 1 cut(s) | 1011 |
| LguI | GCTCTTC | 1 cut(s) | 2100 |
| LweI | GCATC | 4 cut(s) | 547, 1573, 2060, 2710 |
| MaeI | CTAG | 7 cut(s) | 302, 573, 1272, 2291, 2312, 2640, 2664 |
| MaeII | ACGT | 6 cut(s) | 1029, 1441, 1666, 1895, 1948, 2059 |
| MaeIII | GTNAC | 4 cut(s) | 136, 935, 1319, 1662 |
| MfeI | CAATTG | 2 cut(s) | 483, 1752 |
| MflI | RGATCY | 4 cut(s) | 721, 782, 1264, 2636 |
| MhlI | GDGCHC | 4 cut(s) | 235, 353, 895, 1717 |
| MluCI | AATT | 8 cut(s) | 356, 483, 678, 764, 1057, 1124, 1752, 1854 |
| MlyI | GAGTC | 5 cut(s) | 488, 620, 1670, 2081, 2768 |
| MmeI | TCCRAC | 4 cut(s) | 193, 1436, 1680, 1704 |
| MroI | TCCGGA | 1 cut(s) | 1174 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1595, 2581 |
| MseI | TTAA | 8 cut(s) | 675, 750, 1010, 1083, 1401, 1689, 1857, 2264 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1868 |
| MspA1I | CMGCKG | 1 cut(s) | 1297 |
| MspI | CCGG | 7 cut(s) | 70, 875, 1117, 1175, 2033, 2269, 2394 |
| MspR9I | CCNGG | 6 cut(s) | 441, 876, 1038, 1117, 2394, 2484 |
| MunI | CAATTG | 2 cut(s) | 483, 1752 |
| Mva1269I | GAATGC | 1 cut(s) | 581 |
| MvaI | CCWGG | 3 cut(s) | 441, 1038, 2484 |
| MvnI | CGCG | 2 cut(s) | 51, 1996 |
| NciI | CCSGG | 3 cut(s) | 876, 1117, 2394 |
| NcoI | CCATGG | 1 cut(s) | 166 |
| NlaIV | GGNNCC | 5 cut(s) | 164, 234, 853, 1516, 2325 |
| NmeAIII | GCCGAG | 1 cut(s) | 1771 |
| NmuCI | GTSAC | 1 cut(s) | 136 |
| NspI | RCATGY | 4 cut(s) | 404, 758, 793, 1699 |
| OliI | CACNNNNGTG | 1 cut(s) | 1868 |
| PaeI | GCATGC | 2 cut(s) | 404, 758 |
| PagI | TCATGA | 1 cut(s) | 1327 |
| PaqCI | CACCTGC | 1 cut(s) | 1996 |
| PciSI | GCTCTTC | 1 cut(s) | 2100 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1892 |
| PctI | GAATGC | 1 cut(s) | 581 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1595, 2581 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1043, 2210 |
| PleI | GAGTC | 5 cut(s) | 487, 620, 1670, 2080, 2767 |
| PmaCI | CACGTG | 1 cut(s) | 1442 |
| PmlI | CACGTG | 1 cut(s) | 1442 |
| PpsI | GAGTC | 5 cut(s) | 487, 620, 1670, 2080, 2767 |
| Ppu21I | YACGTR | 2 cut(s) | 1442, 1667 |
| PshAI | GACNNNNGTC | 1 cut(s) | 956 |
| Psp124BI | GAGCTC | 1 cut(s) | 353 |
| Psp1406I | AACGTT | 1 cut(s) | 1948 |
| Psp6I | CCWGG | 3 cut(s) | 439, 1036, 2482 |
| PspCI | CACGTG | 1 cut(s) | 1442 |
| PspFI | CCCAGC | 3 cut(s) | 89, 194, 228 |
| PspGI | CCWGG | 3 cut(s) | 439, 1036, 2482 |
| PspN4I | GGNNCC | 5 cut(s) | 164, 234, 853, 1516, 2325 |
| PspPI | GGNCC | 5 cut(s) | 443, 851, 1114, 1133, 2709 |
| PstI | CTGCAG | 3 cut(s) | 1195, 1435, 1744 |
| PstNI | CAGNNNCTG | 2 cut(s) | 89, 1586 |
| PsuI | RGATCY | 4 cut(s) | 721, 782, 1264, 2636 |
| PvuII | CAGCTG | 1 cut(s) | 1297 |
| RsaI | GTAC | 3 cut(s) | 1419, 1669, 2082 |
| RsaNI | GTAC | 3 cut(s) | 1418, 1668, 2081 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1868 |
| SacI | GAGCTC | 1 cut(s) | 353 |
| SapI | GCTCTTC | 1 cut(s) | 2100 |
| SaqAI | TTAA | 8 cut(s) | 675, 750, 1010, 1083, 1401, 1689, 1857, 2264 |
| Sau96I | GGNCC | 5 cut(s) | 443, 851, 1114, 1133, 2709 |
| SchI | GAGTC | 5 cut(s) | 488, 620, 1670, 2081, 2768 |
| ScrFI | CCNGG | 6 cut(s) | 441, 876, 1038, 1117, 2394, 2484 |
| SduI | GDGCHC | 4 cut(s) | 235, 353, 895, 1717 |
| SfaNI | GCATC | 4 cut(s) | 547, 1573, 2060, 2710 |
| SfcI | CTRYAG | 4 cut(s) | 1066, 1191, 1431, 1740 |
| SinI | GGWCC | 3 cut(s) | 851, 1133, 2709 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1868 |
| SmlI | CTYRAG | 4 cut(s) | 896, 1139, 1569, 1640 |
| SmoI | CTYRAG | 4 cut(s) | 896, 1139, 1569, 1640 |
| SnaBI | TACGTA | 1 cut(s) | 1667 |
| SphI | GCATGC | 2 cut(s) | 404, 758 |
| Sse9I | AATT | 8 cut(s) | 356, 483, 678, 764, 1057, 1124, 1752, 1854 |
| SsiI | CCGC | 8 cut(s) | 320, 394, 517, 1248, 1994, 2249, 2650, 2767 |
| SspMI | CTAG | 7 cut(s) | 302, 573, 1272, 2291, 2312, 2640, 2664 |
| SstI | GAGCTC | 1 cut(s) | 353 |
| StyD4I | CCNGG | 6 cut(s) | 439, 874, 1036, 1115, 2392, 2482 |
| StyI | CCWWGG | 1 cut(s) | 166 |
| TaaI | ACNGT | 9 cut(s) | 211, 240, 342, 1070, 1162, 1325, 1417, 2041, 2733 |
| TaiI | ACGT | 6 cut(s) | 1032, 1444, 1669, 1898, 1951, 2062 |
| TaqI | TCGA | 6 cut(s) | 1218, 1806, 1886, 2319, 2389, 2516 |
| TasI | AATT | 8 cut(s) | 356, 483, 678, 764, 1057, 1124, 1752, 1854 |
| TauI | GCSGC | 2 cut(s) | 520, 2252 |
| Tru1I | TTAA | 8 cut(s) | 675, 750, 1010, 1083, 1401, 1689, 1857, 2264 |
| Tru9I | TTAA | 8 cut(s) | 675, 750, 1010, 1083, 1401, 1689, 1857, 2264 |
| TscAI | CASTG | 3 cut(s) | 345, 1870, 2046 |
| TseFI | GTSAC | 1 cut(s) | 136 |
| Tsp45I | GTSAC | 1 cut(s) | 136 |
| TspGWI | ACGGA | 2 cut(s) | 2506, 2554 |
| TspRI | CASTG | 3 cut(s) | 345, 1870, 2046 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1043, 2210 |
| VpaK11BI | GGWCC | 3 cut(s) | 851, 1133, 2709 |
| XapI | RAATTY | 4 cut(s) | 678, 764, 1057, 1124 |
| XbaI | TCTAGA | 3 cut(s) | 301, 1271, 2663 |
| XceI | RCATGY | 4 cut(s) | 404, 758, 793, 1699 |
| XmiI | GTMKAC | 1 cut(s) | 1875 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1595, 2581 |
| XspI | CTAG | 7 cut(s) | 302, 573, 1272, 2291, 2312, 2640, 2664 |