Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012025

Physical Location & Seq

Genomic Coordinates Forward (+)

62509468 .. 62517955

Gene Structure 8488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00269740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2937 bp

ATGGATTCCGACGAAGAAGACTTCGTTTTCTACGGAACGCCAATAGCGCGCGAGGATGACGTCAACACCAGCCGGAAGAAGAAGTCCGTCGCCGAAGCCTCCGGTCAGCTCCGCACTCTCGCTCCTTGGAAGCAAGAGGTTAGAGATGAAGAAGGGAGAAGAAGATTTCATGGGGCCTTTAGCGGAGGGTTTTCTGCTGGCTACTACAATACAGTGGGATCGAAAGAGGGTTGGACACCACAGACCTTTGTGTCTTCCCGCAAGAACAGAGCTGAAGTCAAACAGCAGGACATTTTGAACTTTCTAGATGAAGATGAAAGAGCTGAATTGGAAGGTCAATCTTTGGGGACATCTTCGCAGTTTGATACATTTGGGTTTACAGCTGCAGATCACGCTCGAAAACATGCAGAAAAGGAACATCAGAAAAGGCCATCAGCTATTCCTGGACCTGTTCCTGATGAATTGGTACTTCCGGCCACAGATTCTATAGGTGTAAAGTTGCTGCTGAAGATGGGATGGCGGCGTGGTCGATCAATTAAGGATTCACATACTGATGTAGCATATGATGCTCGAAGGGAGGCTAGAAAAGCTTTCTTAGCATTTTCTACTAATGATGCAAAAACACAGCTGGCTGACTCTGAACCCATTCATGATAAATCTGAGAATTGTACAGAGCAGCCTGCAAGTGATGATGTCCAGTCTTCACAAAATACACCTGTTTATGTACTGAACCCAAAGCAGGATCTGCATGGATTAGGCTTTGATCCTTTTAAGCATGCTCCTGAGTTTAGGGAAAAGAAAAGATCACGCGTATCTGTTAATAGGGGCCCTGGAAACAAAAGTGCTCTTTTAATGAACAATAGTCTTTTTGGCTTCAAATCAGGAAAAGCTGCTCCTGGTTTTGGAATTGGAGCACTTGAAGATTTTGATGCTGAAGATGAGGATGTCTATGCCTCTGGCTATGACTTCGAGGAGACATATGCTGAAGATATTGATGAGCCAACAAAATTGATCATGGATAGTAAGCAAAAGTCAGTTCAAAAGGAAGCAGGTGCTCTCTCTGGATTTAGACTTGCTTCAAATTCTGACTACCAGCTTGAAAGAACTGATAAATACTCCTCTGGGATATCTTCTAGATTTGATCCCCCTGTAGTTCCAAAGGATTTTGTACCCCATCATAAATTTCCTGGGCCTCCTGAGACTAGCTACAAGCTTGGAGATCCTGGTCCCCCGGAAGTCCCACCTCCTCAGGATAATAATCTGAAACTGTTAATTGATGGGGTTGCAACTTTAGTAGCTCGATGTGGCAAATTATTTGAGGATCTCTCAAGAGAGAAAAATCAATCAAATCCATTGTTTAGTTTTCTTGTTGGAGGAAATGGTCATGAGTATTACGCAAGGAAGCTGTGGGAGGAGCAACAGAAGAGAGGAGATCAAACCAAGCTGCAATTAGATGGTAAATTGTCTCCAAGAACACAGAAAATGACAGCAGAGAGTCGTGGAAAAATTTTAGGGGAAAGGCCTTTGGAGCGAAGCTCTAAGGACTTGAGTACATCAATTCCTTCTACAGATGCGATTCATCTTCAGTACAATCTTTCAGATACATTTACTGATCCCTCATCATATAGTGAGATGCCAGTAGTCGCGAAACCCTTCATACATGATACAGCAAAGCAAGAAAGATTTGAGCAGTTTCTTAAGGACAAGTACCAAGGAGGGCTTCGATCTACTGACTCTGGTAGAGCTAGTCATATGTCAGAAGCAGCTCGTGCTCTTGAGAGATTAGACTTTGAAGCTGCAGCTGAGGCAATAAAAAAAGGAAATGGACAAGCTAAAGATATTCAAGCTCAAGATGCGATCCCAAAGGAAGTCCACGTAAAACGAACAGAATATCAATGGCGTCCTTCACCTATCCTATGCAAACGGTTTGATCTGATTGATCCTTATATGGGGAAGCCAGCACCGGCTCCACGATCGAAGAGTAAAATTGAAACTCTCATTTTCACATCTGATTCTGTAAAAGCGACTAACGAAGAAGAAACTATAATTGTAAAGAGAGACTCATTTCAGATGCCTCAACCTGAGGCCCAAGGAATAAGCAAAGATGCAGCTGACAATGAAAGTGGTGGTGAGGTGGAAGTTGAAAATGTGGAGAGGCCTGTTGACCTTTACAAGGCTATCTTTTCTGATGATTCAGATGATGAAGAGGATACCTCTATTCCTAATGAAGTTGGTAATCCCGAGAAGAAGGTTGAAGCAGCTAACACAACATTAAACCGTTTGATTGCAGGTGACTTTTTGGAATCCTTGGGTAAAGAACTTGGCTTAGAGGTTCCGCTCGAGTTGTCTTCCTCAACAAACAAAGCCATGAATTCTGCACCTCCCAAAGAAACTGCCAATGCCAATTCAAGAATTTACAGTACTTATTCAGTTGAAGATTCTTCCACTCTTAATGTCCCTCACAGCCGGGAGATTGTTCAAGATCGTTCATCTGAAAAAAGGGAGCCTGTTAATGGTAACTTAATAGGTAACTCAGCCAGAAGTAATAGCACATACGCTGAGACTGCTTTAGGGAATCAGGTTGATAAAAATATCTCAGAGAAAGGACCTCTACAGGATAGGAAATTTAAAACCCCCTCAAGGAGGCACCGAAGCAGCAGCTCATCATCAGAAGATGAAAGAAGTAGAAAGCGCTCCAGGCGACGTCGACACAGACACAGTGATTCAGATAGCGATTCATCCAGTGATCATCAAGACCGATATCATTCTAGGTCTAAAGGGAAGAAGAAAGGATCCTCACGAGAAAAGAGCAGTAGTAGCAGAAGTCACTCAAAACATCACAAGCGTAGAAGCAGAGACTCCCCAAGTAGATATGATTATTCCCCTGAGAAGGAACGCACAGAAACCAAGAGAGATAAGCACAAAAGGAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009888 GO:0009892 GO:0009987 GO:0010033 GO:0010087 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070878 GO:0070883 GO:0070887 GO:0070918 GO:0071013 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1604 Surp

Protein Analysis

978

Amino Acids

109.53

Weight (kDa)

6.54

Isoelectric Point (pI)

62.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1604	PF07713	41 - 121	1.8e-35	Protein of unknown function (DUF1604)
Surp	PF01805	424 - 471	3.6e-11	Surp module
HTH_TGH	PF26093	530 - 608	5.8e-20	TGH-like, helix-turn-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23080 AT5G23080
fragaria_vesca	FvH4_5g12911 FvH4_5g12911
malus_domestica	MD06G1209200.v1.1 MD14G1219700.v1.1
prunus_persica	Prupe.5G214300_v2.0.a1
pyrus_communis	pycom06g18680 pycom14g18200
rosa_chinensis	RchiOBHm_Chr7g0184311
rosa_laevigata	RLG00000004987
rosa_multiflora	Rmu_co8385771.1_g000001 Rmu_co8404991.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269740
rosa_samantha	Rh7AG081200 Rh7BG066100 Rh7CG066400 Rh7DG066100
rosa_wichuraiana	Rw7G005420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1040, 2279
AasI	GACNNNNNNGTC	1 cut(s)	250
AatII	GACGTC	2 cut(s)	63, 2707
Acc36I	ACCTGC	2 cut(s)	1040, 2279
AccB1I	GGYRCC	1 cut(s)	2646
AccBSI	CCGCTC	1 cut(s)	2338
AccI	GTMKAC	1 cut(s)	2707
AccII	CGCG	4 cut(s)	49, 51, 810, 1646
AciI	CCGC	5 cut(s)	112, 183, 259, 520, 2336
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	6 cut(s)	1081, 1181, 1506, 2371, 2412, 2624
AcuI	CTGAAG	5 cut(s)	294, 527, 954, 1005, 1568
AcyI	GRCGYC	3 cut(s)	60, 1900, 2704
AfaI	GTAC	8 cut(s)	468, 670, 726, 1170, 1552, 1589, 1709, 2422
AfeI	AGCGCT	1 cut(s)	2693
AfiI	CCNNNNNNNGG	8 cut(s)	739, 902, 1949, 2173, 2513, 2640, 2643, 2890
AflII	CTTAAG	1 cut(s)	1697
AflIII	ACRYGT	1 cut(s)	808
AjnI	CCWGG	6 cut(s)	442, 829, 895, 1186, 1222, 2696
AjuI	GAANNNNNNNTTGG	2 cut(s)	1704, 1736
Alw21I	GWGCWC	4 cut(s)	847, 916, 1057, 1774
Alw26I	GTCTC	6 cut(s)	968, 1193, 1470, 2052, 2555, 2850
AlwNI	CAGNNNCTG	1 cut(s)	745
Ama87I	CYCGRG	2 cut(s)	2240, 2339
Aor51HI	AGCGCT	1 cut(s)	2693
AoxI	GGCC	8 cut(s)	174, 428, 474, 826, 1190, 1520, 2085, 2156
ApaI	GGGCCC	1 cut(s)	830
ApoI	RAATTY	6 cut(s)	1081, 1181, 1506, 2371, 2412, 2624
Asp700I	GAANNNNTTC	2 cut(s)	645, 1652
AspLEI	GCGC	3 cut(s)	49, 51, 2694
AspS9I	GGNCC	8 cut(s)	174, 446, 826, 827, 1190, 1226, 2086, 2606
AsuC2I	CCSGG	2 cut(s)	1232, 2468
AsuHPI	GGTGA	3 cut(s)	1899, 2141, 2303
AvaI	CYCGRG	2 cut(s)	2240, 2339
AvaII	GGWCC	3 cut(s)	446, 1226, 2606
AxyI	CCTNAGG	2 cut(s)	1248, 2082
BaeGI	GKGCMC	1 cut(s)	830
BamHI	GGATCC	1 cut(s)	2792
BanI	GGYRCC	1 cut(s)	2646
BanII	GRGCYC	1 cut(s)	830
BauI	CACGAG	2 cut(s)	1767, 2799
BbsI	GAAGAC	4 cut(s)	24, 246, 693, 2340
Bbv12I	GWGCWC	4 cut(s)	847, 916, 1057, 1774
BbvCI	CCTCAGC	1 cut(s)	1803
BccI	CCATC	6 cut(s)	439, 505, 510, 1182, 1271, 1448
BciT130I	CCWGG	6 cut(s)	444, 831, 897, 1188, 1224, 2698
BciVI	GTATCC	1 cut(s)	2203
BclI	TGATCA	2 cut(s)	1011, 2746
BcnI	CCSGG	2 cut(s)	1232, 2468
BcoDI	GTCTC	6 cut(s)	968, 1193, 1470, 2052, 2555, 2850
BfaI	CTAG	6 cut(s)	305, 582, 1134, 1203, 1746, 2769
BfmI	CTRYAG	6 cut(s)	384, 486, 1149, 1566, 1797, 2612
BfoI	RGCGCY	1 cut(s)	2695
BfrI	CTTAAG	1 cut(s)	1697
BfuAI	ACCTGC	2 cut(s)	1040, 2279
BfuI	GTATCC	1 cut(s)	2203
BmcAI	AGTACT	1 cut(s)	2422
Bme1390I	CCNGG	8 cut(s)	444, 831, 897, 1188, 1224, 1232, 2468, 2698
Bme18I	GGWCC	3 cut(s)	446, 1226, 2606
BmeT110I	CYCGRG	2 cut(s)	2240, 2339
BmgT120I	GGNCC	8 cut(s)	174, 446, 826, 827, 1190, 1226, 2086, 2606
BmiI	GGNNCC	9 cut(s)	175, 827, 828, 1228, 1968, 2334, 2505, 2648, 2794
BmrFI	CCNGG	8 cut(s)	444, 831, 897, 1188, 1224, 1232, 2468, 2698
BmsI	GCATC	8 cut(s)	556, 604, 919, 1561, 1623, 1843, 2061, 2095
BpiI	GAAGAC	4 cut(s)	24, 246, 693, 2340
BplI	GAGNNNNNCTC	6 cut(s)	1310, 1342, 1520, 1552, 2198, 2230
BpmI	CTGGAG	1 cut(s)	2680
Bpu10I	CCTNAGC	1 cut(s)	1803
BpuEI	CTTGAG	5 cut(s)	1312, 1567, 1796, 1833, 2623
BpuMI	CCSGG	2 cut(s)	1232, 2468
BsaAI	YACGTR	1 cut(s)	1876
BsaBI	GATNNNNATC	1 cut(s)	1257
BsaHI	GRCGYC	3 cut(s)	60, 1900, 2704
BsaJI	CCNNGG	7 cut(s)	125, 829, 1187, 1230, 1711, 2089, 2307
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	8 cut(s)	739, 902, 1949, 2173, 2513, 2640, 2643, 2890
Bse118I	RCCGGY	1 cut(s)	1963
Bse1I	ACTGG	3 cut(s)	697, 1637, 2742
Bse21I	CCTNAGG	2 cut(s)	1248, 2082
Bse8I	GATNNNNATC	1 cut(s)	1257
BseBI	CCWGG	6 cut(s)	444, 831, 897, 1188, 1224, 2698
BseDI	CCNNGG	7 cut(s)	125, 829, 1187, 1230, 1711, 2089, 2307
BseGI	GGATG	4 cut(s)	61, 521, 949, 2738
BseJI	GATNNNNATC	1 cut(s)	1257
BseLI	CCNNNNNNNGG	8 cut(s)	739, 902, 1949, 2173, 2513, 2640, 2643, 2890
BseNI	ACTGG	3 cut(s)	697, 1637, 2742
BsePI	GCGCGC	1 cut(s)	47
BseRI	GAGGAG	5 cut(s)	986, 1108, 1236, 1427, 1443
BseSI	GKGCMC	1 cut(s)	830
BsgI	GTGCAG	1 cut(s)	2361
Bsh1236I	CGCG	4 cut(s)	49, 51, 810, 1646
Bsh1285I	CGRYCG	1 cut(s)	1976
BshFI	GGCC	8 cut(s)	176, 430, 476, 828, 1192, 1522, 2087, 2158
BshNI	GGYRCC	1 cut(s)	2646
BsiEI	CGRYCG	1 cut(s)	1976
BsiHKAI	GWGCWC	4 cut(s)	847, 916, 1057, 1774
BsiHKCI	CYCGRG	2 cut(s)	2240, 2339
BsiSI	CCGG	6 cut(s)	73, 102, 473, 1232, 1964, 2467
BslFI	GGGAC	4 cut(s)	361, 1212, 1223, 2441
BslI	CCNNNNNNNGG	8 cut(s)	739, 902, 1949, 2173, 2513, 2640, 2643, 2890
BsmAI	GTCTC	6 cut(s)	968, 1193, 1470, 2052, 2555, 2850
BsmFI	GGGAC	4 cut(s)	361, 1212, 1223, 2441
BsnI	GGCC	8 cut(s)	176, 430, 476, 828, 1192, 1522, 2087, 2158
BsoBI	CYCGRG	2 cut(s)	2240, 2339
Bsp120I	GGGCCC	1 cut(s)	826
Bsp1286I	GDGCHC	5 cut(s)	830, 847, 916, 1057, 1774
Bsp1407I	TGTACA	1 cut(s)	668
Bsp68I	TCGCGA	1 cut(s)	1646
BspACI	CCGC	5 cut(s)	112, 183, 259, 520, 2336
BspANI	GGCC	8 cut(s)	176, 430, 476, 828, 1192, 1522, 2087, 2158
BspFNI	CGCG	4 cut(s)	49, 51, 810, 1646
BspHI	TCATGA	2 cut(s)	649, 1384
BspLI	GGNNCC	9 cut(s)	175, 827, 828, 1228, 1968, 2334, 2505, 2648, 2794
BspMAI	CTGCAG	2 cut(s)	388, 1801
BspMI	ACCTGC	2 cut(s)	1040, 2279
BspT107I	GGYRCC	1 cut(s)	2646
BspTI	CTTAAG	1 cut(s)	1697
BsrBI	CCGCTC	1 cut(s)	2338
BsrFI	RCCGGY	1 cut(s)	1963
BsrGI	TGTACA	1 cut(s)	668
BsrI	ACTGG	3 cut(s)	697, 1637, 2742
BssAI	RCCGGY	1 cut(s)	1963
BssECI	CCNNGG	7 cut(s)	125, 829, 1187, 1230, 1711, 2089, 2307
BssHII	GCGCGC	1 cut(s)	47
BssNI	GRCGYC	3 cut(s)	60, 1900, 2704
BssSI	CACGAG	2 cut(s)	1767, 2799
BssT1I	CCWWGG	4 cut(s)	125, 1711, 2089, 2307
Bst2BI	CACGAG	2 cut(s)	1767, 2799
Bst2UI	CCWGG	6 cut(s)	444, 831, 897, 1188, 1224, 2698
Bst4CI	ACNGT	6 cut(s)	214, 1269, 1926, 2279, 2420, 2720
Bst6I	CTCTTC	3 cut(s)	1418, 1973, 2199
BstACI	GRCGYC	3 cut(s)	60, 1900, 2704
BstAFI	CTTAAG	1 cut(s)	1697
BstAPI	GCANNNNNTGC	3 cut(s)	566, 745, 1769
BstAUI	TGTACA	1 cut(s)	668
BstBAI	YACGTR	1 cut(s)	1876
BstC8I	GCNNGC	6 cut(s)	49, 199, 630, 681, 777, 1959
BstENI	CCTNNNNNAGG	2 cut(s)	2171, 2641
BstF5I	GGATG	4 cut(s)	61, 521, 949, 2738
BstFNI	CGCG	4 cut(s)	49, 51, 810, 1646
BstH2I	RGCGCY	1 cut(s)	2695
BstHHI	GCGC	3 cut(s)	49, 51, 2694
BstMAI	GTCTC	6 cut(s)	968, 1193, 1470, 2052, 2555, 2850
BstMCI	CGRYCG	1 cut(s)	1976
BstNI	CCWGG	6 cut(s)	444, 831, 897, 1188, 1224, 2698
BstNSI	RCATGY	2 cut(s)	407, 779
BstSCI	CCNGG	8 cut(s)	442, 829, 895, 1186, 1222, 1230, 2466, 2696
BstSFI	CTRYAG	6 cut(s)	384, 486, 1149, 1566, 1797, 2612
BstSLI	GKGCMC	1 cut(s)	830
BstUI	CGCG	4 cut(s)	49, 51, 810, 1646
BstV2I	GAAGAC	4 cut(s)	24, 246, 693, 2340
BstX2I	RGATCY	4 cut(s)	742, 1219, 1321, 2792
BstYI	RGATCY	4 cut(s)	742, 1219, 1321, 2792
Bsu36I	CCTNAGG	2 cut(s)	1248, 2082
BsuI	GTATCC	1 cut(s)	2203
BsuRI	GGCC	8 cut(s)	176, 430, 476, 828, 1192, 1522, 2087, 2158
BtsCI	GGATG	4 cut(s)	61, 521, 949, 2738
BtsIMutI	CAGTG	3 cut(s)	219, 2725, 2749
BtuMI	TCGCGA	1 cut(s)	1646
BveI	ACCTGC	2 cut(s)	1040, 2279
Cac8I	GCNNGC	6 cut(s)	49, 199, 630, 681, 777, 1959
CaiI	CAGNNNCTG	1 cut(s)	745
CciI	TCATGA	2 cut(s)	649, 1384
CfoI	GCGC	3 cut(s)	49, 51, 2694
Cfr10I	RCCGGY	1 cut(s)	1963
Cfr13I	GGNCC	8 cut(s)	174, 446, 826, 827, 1190, 1226, 2086, 2606
CseI	GACGC	1 cut(s)	1889
Csp6I	GTAC	8 cut(s)	467, 669, 725, 1169, 1551, 1588, 1708, 2421
CspCI	CAANNNNNGTGG	2 cut(s)	2104, 2139
CviAII	CATG	9 cut(s)	170, 404, 650, 749, 776, 1015, 1385, 1661, 2368
CviQI	GTAC	8 cut(s)	467, 669, 725, 1169, 1551, 1588, 1708, 2421
DraI	TTTAAA	1 cut(s)	2629
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	3 cut(s)	1418, 1973, 2199
EarI	CTCTTC	3 cut(s)	1418, 1973, 2199
Eco130I	CCWWGG	4 cut(s)	125, 1711, 2089, 2307
Eco147I	AGGCCT	2 cut(s)	1522, 2158
Eco24I	GRGCYC	1 cut(s)	830
Eco32I	GATATC	2 cut(s)	1128, 2762
Eco47I	GGWCC	3 cut(s)	446, 1226, 2606
Eco47III	AGCGCT	1 cut(s)	2693
Eco57I	CTGAAG	5 cut(s)	294, 527, 954, 1005, 1568
Eco81I	CCTNAGG	2 cut(s)	1248, 2082
Eco88I	CYCGRG	2 cut(s)	2240, 2339
EcoNI	CCTNNNNNAGG	2 cut(s)	2171, 2641
EcoO109I	RGGNCCY	4 cut(s)	174, 826, 827, 2606
EcoRI	GAATTC	1 cut(s)	2371
EcoRII	CCWGG	6 cut(s)	442, 829, 895, 1186, 1222, 2696
EcoRV	GATATC	2 cut(s)	1128, 2762
EcoT14I	CCWWGG	4 cut(s)	125, 1711, 2089, 2307
EcoT38I	GRGCYC	1 cut(s)	830
ErhI	CCWWGG	4 cut(s)	125, 1711, 2089, 2307
FaeI	CATG	9 cut(s)	173, 407, 653, 752, 779, 1018, 1388, 1664, 2371
FalI	AAGNNNNNCTT	4 cut(s)	1704, 1736, 2165, 2197
FaqI	GGGAC	4 cut(s)	361, 1212, 1223, 2441
FatI	CATG	9 cut(s)	169, 403, 649, 748, 775, 1014, 1384, 1660, 2367
FauI	CCCGC	1 cut(s)	266
FauNDI	CATATG	3 cut(s)	562, 979, 1752
FbaI	TGATCA	2 cut(s)	1011, 2746
FblI	GTMKAC	1 cut(s)	2707
FokI	GGATG	4 cut(s)	68, 528, 956, 2725
FriOI	GRGCYC	1 cut(s)	830
FspBI	CTAG	6 cut(s)	305, 582, 1134, 1203, 1746, 2769
GlaI	GCGC	3 cut(s)	48, 50, 2693
GsuI	CTGGAG	1 cut(s)	2680
HaeII	RGCGCY	1 cut(s)	2695
HaeIII	GGCC	8 cut(s)	176, 430, 476, 828, 1192, 1522, 2087, 2158
HapII	CCGG	6 cut(s)	73, 102, 473, 1232, 1964, 2467
HgaI	GACGC	1 cut(s)	1889
HhaI	GCGC	3 cut(s)	49, 51, 2694
Hin1I	GRCGYC	3 cut(s)	60, 1900, 2704
Hin1II	CATG	9 cut(s)	173, 407, 653, 752, 779, 1018, 1388, 1664, 2371
Hin6I	GCGC	3 cut(s)	47, 49, 2692
HinP1I	GCGC	3 cut(s)	47, 49, 2692
HincII	GTYRAC	3 cut(s)	64, 2164, 2708
HindII	GTYRAC	3 cut(s)	64, 2164, 2708
HindIII	AAGCTT	2 cut(s)	588, 1211
HpaII	CCGG	6 cut(s)	73, 102, 473, 1232, 1964, 2467
HphI	GGTGA	3 cut(s)	1899, 2141, 2303
Hpy166II	GTNNAC	5 cut(s)	64, 378, 1873, 2164, 2708
Hpy8I	GTNNAC	5 cut(s)	64, 378, 1873, 2164, 2708
Hpy99I	CGWCG	4 cut(s)	14, 92, 2706, 2709
HpyAV	CCTTC	8 cut(s)	146, 326, 567, 1572, 1663, 1914, 2242, 2884
HpyCH4III	ACNGT	6 cut(s)	214, 1269, 1926, 2279, 2420, 2720
HpyCH4IV	ACGT	3 cut(s)	60, 1875, 2704
HpySE526I	ACGT	3 cut(s)	60, 1875, 2704
Hsp92I	GRCGYC	3 cut(s)	60, 1900, 2704
Hsp92II	CATG	9 cut(s)	173, 407, 653, 752, 779, 1018, 1388, 1664, 2371
HspAI	GCGC	3 cut(s)	47, 49, 2692
Ksp22I	TGATCA	2 cut(s)	1011, 2746
LweI	GCATC	8 cut(s)	556, 604, 919, 1561, 1623, 1843, 2061, 2095
MaeI	CTAG	6 cut(s)	305, 582, 1134, 1203, 1746, 2769
MaeII	ACGT	3 cut(s)	60, 1875, 2704
MaeIII	GTNAC	4 cut(s)	2291, 2516, 2528, 2825
MbiI	CCGCTC	1 cut(s)	2338
MflI	RGATCY	4 cut(s)	742, 1219, 1321, 2792
MhlI	GDGCHC	5 cut(s)	830, 847, 916, 1057, 1774
MluI	ACGCGT	1 cut(s)	808
MlyI	GAGTC	5 cut(s)	629, 1504, 1727, 2054, 2852
MmeI	TCCRAC	3 cut(s)	33, 212, 1351
MroXI	GAANNNNTTC	2 cut(s)	645, 1652
MslI	CAYNNNNRTG	1 cut(s)	552
MspA1I	CMGCKG	4 cut(s)	383, 628, 1802, 2111
MspCI	CTTAAG	1 cut(s)	1697
MspI	CCGG	6 cut(s)	73, 102, 473, 1232, 1964, 2467
MspR9I	CCNGG	8 cut(s)	444, 831, 897, 1188, 1224, 1232, 2468, 2698
MvaI	CCWGG	6 cut(s)	444, 831, 897, 1188, 1224, 2698
MvnI	CGCG	4 cut(s)	49, 51, 810, 1646
NciI	CCSGG	2 cut(s)	1232, 2468
NdeI	CATATG	3 cut(s)	562, 979, 1752
NlaIII	CATG	9 cut(s)	173, 407, 653, 752, 779, 1018, 1388, 1664, 2371
NlaIV	GGNNCC	9 cut(s)	175, 827, 828, 1228, 1968, 2334, 2505, 2648, 2794
NmuCI	GTSAC	2 cut(s)	2291, 2825
NruI	TCGCGA	1 cut(s)	1646
NspI	RCATGY	2 cut(s)	407, 779
PaeI	GCATGC	1 cut(s)	779
PaeR7I	CTCGAG	1 cut(s)	2339
PagI	TCATGA	2 cut(s)	649, 1384
PaqCI	CACCTGC	2 cut(s)	1040, 2279
PauI	GCGCGC	1 cut(s)	47
PceI	AGGCCT	2 cut(s)	1522, 2158
PdmI	GAANNNNTTC	2 cut(s)	645, 1652
PfoI	TCCNGGA	1 cut(s)	442
Ple19I	CGATCG	1 cut(s)	1976
PleI	GAGTC	5 cut(s)	629, 1503, 1727, 2054, 2852
PpsI	GAGTC	5 cut(s)	629, 1503, 1727, 2054, 2852
Ppu21I	YACGTR	1 cut(s)	1876
PpuMI	RGGWCCY	1 cut(s)	2606
Psp5II	RGGWCCY	1 cut(s)	2606
Psp6I	CCWGG	6 cut(s)	442, 829, 895, 1186, 1222, 2696
PspGI	CCWGG	6 cut(s)	442, 829, 895, 1186, 1222, 2696
PspN4I	GGNNCC	9 cut(s)	175, 827, 828, 1228, 1968, 2334, 2505, 2648, 2794
PspOMI	GGGCCC	1 cut(s)	826
PspPI	GGNCC	8 cut(s)	174, 446, 826, 827, 1190, 1226, 2086, 2606
PspPPI	RGGWCCY	1 cut(s)	2606
PspXI	VCTCGAGB	1 cut(s)	2339
PstI	CTGCAG	2 cut(s)	388, 1801
PstNI	CAGNNNCTG	1 cut(s)	745
PsuI	RGATCY	4 cut(s)	742, 1219, 1321, 2792
PteI	GCGCGC	1 cut(s)	47
PvuI	CGATCG	1 cut(s)	1976
PvuII	CAGCTG	4 cut(s)	383, 628, 1802, 2111
RruI	TCGCGA	1 cut(s)	1646
RsaI	GTAC	8 cut(s)	468, 670, 726, 1170, 1552, 1589, 1709, 2422
RsaNI	GTAC	8 cut(s)	467, 669, 725, 1169, 1551, 1588, 1708, 2421
RseI	CAYNNNNRTG	1 cut(s)	552
SalI	GTCGAC	1 cut(s)	2706
Sau96I	GGNCC	8 cut(s)	174, 446, 826, 827, 1190, 1226, 2086, 2606
ScaI	AGTACT	1 cut(s)	2422
SchI	GAGTC	5 cut(s)	629, 1504, 1727, 2054, 2852
ScrFI	CCNGG	8 cut(s)	444, 831, 897, 1188, 1224, 1232, 2468, 2698
SduI	GDGCHC	5 cut(s)	830, 847, 916, 1057, 1774
SfaNI	GCATC	8 cut(s)	556, 604, 919, 1561, 1623, 1843, 2061, 2095
SfcI	CTRYAG	6 cut(s)	384, 486, 1149, 1566, 1797, 2612
Sfr274I	CTCGAG	1 cut(s)	2339
SinI	GGWCC	3 cut(s)	446, 1226, 2606
SlaI	CTCGAG	1 cut(s)	2339
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	7 cut(s)	1327, 1546, 1697, 1775, 1848, 2339, 2638
SmoI	CTYRAG	7 cut(s)	1327, 1546, 1697, 1775, 1848, 2339, 2638
SphI	GCATGC	1 cut(s)	779
SseBI	AGGCCT	2 cut(s)	1522, 2158
SsiI	CCGC	5 cut(s)	112, 183, 259, 520, 2336
SspMI	CTAG	6 cut(s)	305, 582, 1134, 1203, 1746, 2769
StuI	AGGCCT	2 cut(s)	1522, 2158
StyD4I	CCNGG	8 cut(s)	442, 829, 895, 1186, 1222, 1230, 2466, 2696
StyI	CCWWGG	4 cut(s)	125, 1711, 2089, 2307
TaaI	ACNGT	6 cut(s)	214, 1269, 1926, 2279, 2420, 2720
TaiI	ACGT	3 cut(s)	63, 1878, 2707
TaqII	GACCGA	1 cut(s)	2772
TatI	WGTACW	5 cut(s)	668, 724, 1550, 1587, 2420
TauI	GCSGC	1 cut(s)	523
TscAI	CASTG	3 cut(s)	219, 2725, 2749
TseFI	GTSAC	2 cut(s)	2291, 2825
Tsp45I	GTSAC	2 cut(s)	2291, 2825
TspGWI	ACGGA	2 cut(s)	48, 76
TspRI	CASTG	3 cut(s)	219, 2725, 2749
Vha464I	CTTAAG	1 cut(s)	1697
VpaK11BI	GGWCC	3 cut(s)	446, 1226, 2606
XagI	CCTNNNNNAGG	2 cut(s)	2171, 2641
XapI	RAATTY	6 cut(s)	1081, 1181, 1506, 2371, 2412, 2624
XbaI	TCTAGA	2 cut(s)	304, 1133
XceI	RCATGY	2 cut(s)	407, 779
XhoI	CTCGAG	1 cut(s)	2339
XmiI	GTMKAC	1 cut(s)	2707
XmnI	GAANNNNTTC	2 cut(s)	645, 1652
XspI	CTAG	6 cut(s)	305, 582, 1134, 1203, 1746, 2769
ZraI	GACGTC	2 cut(s)	61, 2705
ZrmI	AGTACT	1 cut(s)	2422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.