Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385771.1

Orthogroup ID

OG0012025

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 779

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385771.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 488 bp

atgacagcagagagtcgtggaaaagttttaggggaaaggcctttggagcgaagctctaaggacttgagtacatcaattccttctacagatgcgattcatcttcagtacaatctttcagatacatttactgatccctcatcatatagtgagatgccagtagtcgcgaaacccttcatacatgatacagcaaagcaagaaagatttgagcagtttcttaaggacaagtaccaaggagggcttcgatctactgactctggtagagctagtcatatgtcagaagcagctcgtgctcttgagagattagactttgaagctgcagctgaggcaataaaaaaagggaaatggagtaaagaaatctctacatcacttactggagggatggaatttacttctgggggatttgtgcaagctaaagatactcaagctcaagatgcgatcccaaaggaagtccacgtaaaacgaacagaatatcaatggcgtccttcacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009888 GO:0009892 GO:0009987 GO:0010033 GO:0010087 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070878 GO:0070883 GO:0070887 GO:0070918 GO:0071013 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1604 Surp

Protein Analysis

163

Amino Acids

18.16

Weight (kDa)

6.44

Isoelectric Point (pI)

46.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23080 AT5G23080
fragaria_vesca	FvH4_5g12911 FvH4_5g12911
malus_domestica	MD06G1209200.v1.1 MD14G1219700.v1.1
prunus_persica	Prupe.5G214300_v2.0.a1
pyrus_communis	pycom06g18680 pycom14g18200
rosa_chinensis	RchiOBHm_Chr7g0184311
rosa_laevigata	RLG00000004987
rosa_multiflora	Rmu_co8385771.1_g000001 Rmu_co8404991.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269740
rosa_samantha	Rh7AG081200 Rh7BG066100 Rh7CG066400 Rh7DG066100
rosa_wichuraiana	Rw7G005420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AclWI	GGATC	2 cut(s)	125, 430
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	3 cut(s)	70, 107, 227
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	311
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	7 cut(s)	54, 263, 284, 314, 320, 410, 425
AluI	AGCT	7 cut(s)	54, 263, 284, 314, 320, 410, 425
Alw21I	GWGCWC	1 cut(s)	292
AlwI	GGATC	2 cut(s)	125, 430
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	3 cut(s)	281, 314, 317
ApoI	RAATTY	1 cut(s)	383
Asp700I	GAANNNNTTC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	477
BauI	CACGAG	1 cut(s)	285
Bbv12I	GWGCWC	1 cut(s)	292
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	293, 301, 329
BccI	CCATC	1 cut(s)	373
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	2 cut(s)	84, 315
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	3 cut(s)	282, 315, 318
BlsI	GCNGC	3 cut(s)	283, 316, 319
BmsI	GCATC	3 cut(s)	79, 141, 421
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	4 cut(s)	85, 314, 405, 411
BsaAI	YACGTR	1 cut(s)	454
BsaHI	GRCGYC	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	155, 376
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	1 cut(s)	384
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	2 cut(s)	155, 376
BseXI	GCAGC	3 cut(s)	293, 301, 329
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	130, 242, 435
Bsp68I	TCGCGA	1 cut(s)	164
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	313
BspFNI	CGCG	1 cut(s)	164
BspMAI	CTGCAG	1 cut(s)	319
BspPI	GGATC	2 cut(s)	125, 430
BspTI	CTTAAG	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	155, 376
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	3 cut(s)	130, 242, 435
BssNI	GRCGYC	1 cut(s)	478
BssSI	CACGAG	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	285
BstACI	GRCGYC	1 cut(s)	478
BstAFI	CTTAAG	1 cut(s)	215
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	2 cut(s)	57, 321
BstF5I	GGATG	1 cut(s)	384
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	3 cut(s)	133, 245, 438
BstMBI	GATC	3 cut(s)	130, 242, 435
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 287, 323, 431
BstSFI	CTRYAG	2 cut(s)	84, 315
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	3 cut(s)	293, 301, 329
BsuRI	GGCC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	384
BtuMI	TCGCGA	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	408
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	3 cut(s)	69, 106, 226
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	9 cut(s)	40, 54, 238, 263, 284, 314, 320, 410, 425
CviKI_1	RGCY	9 cut(s)	40, 54, 238, 263, 284, 314, 320, 410, 425
CviQI	GTAC	3 cut(s)	69, 106, 226
DdeI	CTNAG	2 cut(s)	57, 321
DpnI	GATC	3 cut(s)	132, 244, 437
DpnII	GATC	3 cut(s)	130, 242, 435
Eco130I	CCWWGG	1 cut(s)	229
Eco147I	AGGCCT	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	1 cut(s)	182
FaiI	YATR	6 cut(s)	142, 144, 176, 180, 270, 272
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	1 cut(s)	178
FauNDI	CATATG	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	282, 315, 318
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	3 cut(s)	282, 315, 318
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	3 cut(s)	282, 315, 318
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	40
HgaI	GACGC	1 cut(s)	467
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	1 cut(s)	182
HinfI	GANTC	3 cut(s)	13, 94, 251
HphI	GGTGA	1 cut(s)	477
Hpy166II	GTNNAC	1 cut(s)	451
Hpy188I	TCNGA	2 cut(s)	118, 277
Hpy188III	TCNNGA	3 cut(s)	163, 293, 428
Hpy8I	GTNNAC	1 cut(s)	451
HpyAV	CCTTC	2 cut(s)	90, 181
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	2 cut(s)	317, 406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 287, 323, 431
HpyF3I	CTNAG	2 cut(s)	57, 321
HpySE526I	ACGT	1 cut(s)	453
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	130, 242, 435
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	4 cut(s)	168, 240, 357, 378
Lsp1109I	GCAGC	3 cut(s)	293, 301, 329
LweI	GCATC	3 cut(s)	79, 141, 421
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	453
MalI	GATC	3 cut(s)	132, 244, 437
MboI	GATC	3 cut(s)	130, 242, 435
MboII	GAAGA	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	2 cut(s)	75, 383
MlyI	GAGTC	2 cut(s)	22, 245
MnlI	CCTC	4 cut(s)	145, 227, 316, 368
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	216
MspA1I	CMGCKG	1 cut(s)	320
MspCI	CTTAAG	1 cut(s)	215
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	4 cut(s)	46, 287, 323, 431
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	3 cut(s)	130, 242, 435
NlaIII	CATG	1 cut(s)	182
NruI	TCGCGA	1 cut(s)	164
PceI	AGGCCT	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	3 cut(s)	283, 316, 319
PleI	GAGTC	2 cut(s)	21, 245
PpsI	GAGTC	2 cut(s)	21, 245
Ppu21I	YACGTR	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	319
PvuII	CAGCTG	1 cut(s)	320
RruI	TCGCGA	1 cut(s)	164
RsaI	GTAC	3 cut(s)	70, 107, 227
RsaNI	GTAC	3 cut(s)	69, 106, 226
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	3 cut(s)	282, 315, 318
Sau3AI	GATC	3 cut(s)	130, 242, 435
SchI	GAGTC	2 cut(s)	22, 245
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	8 cut(s)	56, 265, 286, 316, 322, 412, 427, 456
SfaNI	GCATC	3 cut(s)	79, 141, 421
SfcI	CTRYAG	2 cut(s)	84, 315
SmlI	CTYRAG	5 cut(s)	64, 215, 293, 420, 426
SmoI	CTYRAG	5 cut(s)	64, 215, 293, 420, 426
Sse9I	AATT	2 cut(s)	75, 383
SseBI	AGGCCT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	264
StuI	AGGCCT	1 cut(s)	40
StyI	CCWWGG	1 cut(s)	229
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	241
TasI	AATT	2 cut(s)	75, 383
TatI	WGTACW	2 cut(s)	68, 105
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TseI	GCWGC	3 cut(s)	281, 314, 317
TspDTI	ATGAA	2 cut(s)	86, 163
Vha464I	CTTAAG	1 cut(s)	215
XapI	RAATTY	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.