Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012025

Physical Location & Seq

Genomic Coordinates Reverse (-)

4583205 .. 4591300

Gene Structure 8096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G005420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2967 bp

ATGGATTCCGACGAAGAAGACTTCGTTTTCTACGGAACGCCAATAGCGCGCGAGGATGACGTCAACACCAGCCGGAAGAAGAAGTCCGTCGCCGAAGCCTCCGGTCAGCTCCGCACTCTCGCTCCTTGGAAGCAAGAGGTTAGAGATGAAGAAGGGAGAAGAAGATTTCACGGGGCCTTTAGCGGAGGGTTTTCTGCTGGCTACTACAATACAGTGGGATCGAAAGAGGGTTGGACACCACAGACCTTTGTGTCTTCCCGTAAGAACAGAGCTGAAGTCAAACAGCAGGACATTTTGAACTTTCTAGATGAAGATGAAAGAGCTGAATTGGAAGGTCAATCTTTGGGGACATCTTCGCAGTTTGATACATTTGGGTTTACAGCTGCAGATCACGCTCGAAAACATGCAGAAAAGGAACATCAGAAAAGGCCATCAGCTATTCCTGGACCTGTTCCTGATGAATTGGTACTTCCGGCCACAGATTCTATAGGTGTAAAGTTGCTGCTGAAGATGGGATGGCGGCGTGGTCGATCAATTAAGGATTCACATACTGATGTAGCATATGATGCTCGAAGGGAGGCTAGAAAAGCTTTCTTAGCATTTTCTACTAATGATGTGAAAACACAGCTGGCTGACTCTGAACCCATTCATGATAAATCTGAGAATTTTACAGAGCAGCCTGCAAGTGATGATGTCCAGTCTTCACAAAATACACCTGTTTATGTACTGAACCCAAAGCAGGATCTGCATGGATTAGGCTTTGATCCTTTTAAGCATGCTCCTGAGTTTAGGGAAAAGAAAAGATCACGCGTATCTGATAATAGGGGCCCTGGAAACAAAAGTGCTCTTTTAATGAACAATAGTCTTTTTGGCTTCAAATCAGGAAAAGCTGCTCCTGGTTTTGGAATTGGAGCACTTGAAGATTTTGATGCTGAAGATGAGGATGTCTATGCCTCTGGCTATGACTTCGAGGAGACGTATGCTGAAGATATTGATGAGCCAACAAAATTGATCATGGATAGTAAGCAAAAGTCAGTTCAAAAGGAAGCAGGTGCTCTCTCTGGATTTAGACTTGCATCAAATTCTGACTACCAGCTTGAAAGATTTGATCCCCCTGTAGTTCCAAAGGATTTTGTACCCCATCATAAATTTCTTGGGCCTCCTGAGACTAGCTACAAGCTTGGAGATCCAGGTCCCCCGGAAGTCCCACCTCCTCAGGATAATAATCTGAAACTGTTAATTGATGGGGTTGCAACTTTAGTAGCTCGATGTGGCAAATTATTTGAGGATCTCTCAAGAGAGAAAAATCAATCAAATCCATTGTTTAGTTTTCTTGTTGGAGGAAATGGTCATGAGTATTACACAAGGAAGTTGTGGGAGGAGCAACAGAAGAGAGGAGATCAAACCAAGCTGCAATTAGATGGTAAATTGTCTCCAAGAACACAGAAAATGACAGCAGAGAGTCGTGGAAAAATTTTAGGGGAAAGGCCTTTGGAGCGAAGCTCTAAGGACTTGAGTACATCAATTCCTTCTACAGATGCGATTCATCTTCAGTACAATCTTTCAGATACATTTACTGATCCCTCATCATATAGTGAGATGCCAGTAGTCGCGAAACCCTTCATACATGATACAGCAAAGCAAGAAAGATTTGAGCAGTTTCTTAAGGACAAGTACCAAGGAGGGCTTCGATCTACTGACTCTGGTAGAGCTAGTCATATGTCAGAAGCAGCTCGTGCTCTTGAGAGATTAGACTTTGAAGCTGCAGCTGAGGCAATAAAAAAAGGGAAATGGAGTAAAGAAATCTCTACATCACTTACTGGAGGGATGGAATTTACTTCTGGGGGATTTGTGCAAGCTAAAGATACTCAAGCTCAAGATGCGATCCCAAAGGAAGTCCACGTAAAACGAACAGAATATCAATGGCGTCCTTCACCTGTCCTATGCAAACGGTTTGATCTGATTGATCCTTATATGGGGAAGCCAGCACCGGCTCCACGATCAAAGAGTAAAATTGAAACTCTCATTTTCACATCCGATTCTGTAAAAGCGACTAAAGAAGAAGAAACTATAATCGTAAAGAGAGACTCATATCAGATGCCTCAACCTGAGGCCCAAGGAATAAGCAAAGATGCAGCTGACAATGAAAGTGGTGGTGAGGTGGAAGTTGAAAATGTGGAGAGGCCTGTTGACCTTTACAAGGCTATCTTTTCTGATGATTCAGATGATGAAGAGGATACCTCTATTCCTAATGAAGTTGGTAATCCCGAGAAGAAGGTTGAAGCAGCTAATACAACATTAAACCGTTTAATTGCAGGTGACTTTTTGGAATCCTTGGGTAAAGAACTTGGCTTAGAGGTTCCGCCCGAGTTGTCTTCCTCAACAAACAAAGCCATGAATTCTGCACCTCCCAAAGGAACTGCCAGTGCCAATTCAAGAATTTACAGTACTTATTCAGTTGAAGATTCTTCCACTCTTAATGTCCCTCACGGCCGGGAGATTGTTCAAGATCGTTCATCTGAAAAAAGGGAGCCTGTTAATGGTAACTTAATAGGTAACTCAGCCAGAAGTAATAGCACATACGCCGAGACTGCTTCTTTAGGGAATCAGGTTGATAAAAATATCTCAGAGAAAGGACCTCTACAGGATAGGAAATTTAAAACCCCCTCAAGGCGGCACCGAAGCAGCAGCTCATCATCAGAAGATGAAAGGAGTAGAAAGCGCTCCAGGCGACGTCGACACAGACACAGCGATTCAGATAGTGATTCATCCAGTGATCATCAAGACCGATATCATTCTAGGTCTAAAGGGAAGAAGAAAGGATCCTCACGAGAAAAGAGCAGTAGTAGCAGAAGTCACTCAAAACATCACAAGCGTAGAAGCAGAGACTCCCCAAGTAGATATGATTATTCCCCTGAGAAGGAACGCACAGAAACCAAGAGAGATAAGCACAAAAGGAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009888 GO:0009892 GO:0009987 GO:0010033 GO:0010087 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070878 GO:0070883 GO:0070887 GO:0070918 GO:0071013 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1604 Surp

Protein Analysis

988

Amino Acids

110.59

Weight (kDa)

6.54

Isoelectric Point (pI)

60.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1604	PF07713	41 - 121	1.9e-35	Protein of unknown function (DUF1604)
Surp	PF01805	413 - 460	1.3e-11	Surp module
HTH_TGH	PF26093	519 - 595	1.2e-19	TGH-like, helix-turn-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23080 AT5G23080
fragaria_vesca	FvH4_5g12911 FvH4_5g12911
malus_domestica	MD06G1209200.v1.1 MD14G1219700.v1.1
prunus_persica	Prupe.5G214300_v2.0.a1
pyrus_communis	pycom06g18680 pycom14g18200
rosa_chinensis	RchiOBHm_Chr7g0184311
rosa_laevigata	RLG00000004987
rosa_multiflora	Rmu_co8385771.1_g000001 Rmu_co8404991.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269740
rosa_samantha	Rh7AG081200 Rh7BG066100 Rh7CG066400 Rh7DG066100
rosa_wichuraiana	Rw7G005420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1040, 2306
AasI	GACNNNNNNGTC	1 cut(s)	250
AatII	GACGTC	2 cut(s)	63, 2737
Acc36I	ACCTGC	2 cut(s)	1040, 2306
AccB1I	GGYRCC	1 cut(s)	2676
AccI	GTMKAC	1 cut(s)	2737
AccII	CGCG	4 cut(s)	49, 51, 810, 1613
AciI	CCGC	5 cut(s)	112, 183, 520, 2363, 2674
AcoI	YGGCCR	2 cut(s)	474, 2491
AcsI	RAATTY	8 cut(s)	664, 1081, 1148, 1473, 1832, 2398, 2439, 2654
AcuI	CTGAAG	5 cut(s)	294, 527, 954, 1005, 1535
AcyI	GRCGYC	3 cut(s)	60, 1927, 2734
AfaI	GTAC	7 cut(s)	468, 726, 1137, 1519, 1556, 1676, 2449
AfeI	AGCGCT	1 cut(s)	2723
AfiI	CCNNNNNNNGG	9 cut(s)	739, 902, 1976, 2200, 2414, 2540, 2670, 2673, 2920
AflII	CTTAAG	1 cut(s)	1664
AflIII	ACRYGT	1 cut(s)	808
AjnI	CCWGG	5 cut(s)	442, 829, 895, 1189, 2726
AjuI	GAANNNNNNNTTGG	2 cut(s)	1671, 1703
Alw21I	GWGCWC	4 cut(s)	847, 916, 1057, 1741
Alw26I	GTCTC	6 cut(s)	968, 1160, 1437, 2079, 2582, 2880
AlwNI	CAGNNNCTG	1 cut(s)	745
Ama87I	CYCGRG	2 cut(s)	2267, 2366
Aor51HI	AGCGCT	1 cut(s)	2723
AoxI	GGCC	9 cut(s)	174, 428, 474, 826, 1157, 1487, 2112, 2183, 2491
ApaI	GGGCCC	1 cut(s)	830
ApoI	RAATTY	8 cut(s)	664, 1081, 1148, 1473, 1832, 2398, 2439, 2654
Asp700I	GAANNNNTTC	2 cut(s)	645, 1619
AspLEI	GCGC	3 cut(s)	49, 51, 2724
AspS9I	GGNCC	8 cut(s)	174, 446, 826, 827, 1157, 1193, 2113, 2636
AsuC2I	CCSGG	2 cut(s)	1199, 2495
AsuHPI	GGTGA	3 cut(s)	1926, 2168, 2330
AvaI	CYCGRG	2 cut(s)	2267, 2366
AvaII	GGWCC	3 cut(s)	446, 1193, 2636
AxyI	CCTNAGG	2 cut(s)	1215, 2109
BaeGI	GKGCMC	1 cut(s)	830
BamHI	GGATCC	1 cut(s)	2822
BanI	GGYRCC	1 cut(s)	2676
BanII	GRGCYC	1 cut(s)	830
BauI	CACGAG	2 cut(s)	1734, 2829
BbsI	GAAGAC	4 cut(s)	24, 246, 693, 2367
Bbv12I	GWGCWC	4 cut(s)	847, 916, 1057, 1741
BbvCI	CCTCAGC	1 cut(s)	1770
BccI	CCATC	7 cut(s)	439, 505, 510, 1149, 1238, 1415, 1822
BceAI	ACGGC	1 cut(s)	2506
BciT130I	CCWGG	5 cut(s)	444, 831, 897, 1191, 2728
BciVI	GTATCC	1 cut(s)	2230
BclI	TGATCA	2 cut(s)	1011, 2776
BcnI	CCSGG	2 cut(s)	1199, 2495
BcoDI	GTCTC	6 cut(s)	968, 1160, 1437, 2079, 2582, 2880
BfaI	CTAG	5 cut(s)	305, 582, 1170, 1713, 2799
BfmI	CTRYAG	6 cut(s)	384, 486, 1116, 1533, 1764, 2642
BfoI	RGCGCY	1 cut(s)	2725
BfrI	CTTAAG	1 cut(s)	1664
BfuAI	ACCTGC	2 cut(s)	1040, 2306
BfuI	GTATCC	1 cut(s)	2230
BmcAI	AGTACT	1 cut(s)	2449
Bme1390I	CCNGG	7 cut(s)	444, 831, 897, 1191, 1199, 2495, 2728
Bme18I	GGWCC	3 cut(s)	446, 1193, 2636
BmeT110I	CYCGRG	2 cut(s)	2267, 2366
BmgT120I	GGNCC	8 cut(s)	174, 446, 826, 827, 1157, 1193, 2113, 2636
BmiI	GGNNCC	9 cut(s)	175, 827, 828, 1195, 1995, 2361, 2532, 2678, 2824
BmrFI	CCNGG	7 cut(s)	444, 831, 897, 1191, 1199, 2495, 2728
BmsI	GCATC	8 cut(s)	556, 919, 1085, 1528, 1590, 1870, 2088, 2122
BpiI	GAAGAC	4 cut(s)	24, 246, 693, 2367
BplI	GAGNNNNNCTC	6 cut(s)	1277, 1309, 1487, 1519, 2225, 2257
BpmI	CTGGAG	2 cut(s)	1842, 2710
Bpu10I	CCTNAGC	1 cut(s)	1770
BpuEI	CTTGAG	6 cut(s)	1279, 1534, 1763, 1854, 1860, 2653
BpuMI	CCSGG	2 cut(s)	1199, 2495
BsaAI	YACGTR	1 cut(s)	1903
BsaBI	GATNNNNATC	1 cut(s)	1224
BsaHI	GRCGYC	3 cut(s)	60, 1927, 2734
BsaJI	CCNNGG	6 cut(s)	125, 829, 1197, 1678, 2116, 2334
BsaWI	WCCGGW	1 cut(s)	101
BsaXI	ACNNNNNCTCC	2 cut(s)	106, 136
Bsc4I	CCNNNNNNNGG	9 cut(s)	739, 902, 1976, 2200, 2414, 2540, 2670, 2673, 2920
Bse118I	RCCGGY	1 cut(s)	1990
Bse1I	ACTGG	5 cut(s)	697, 1604, 1825, 2424, 2772
Bse21I	CCTNAGG	2 cut(s)	1215, 2109
Bse8I	GATNNNNATC	1 cut(s)	1224
BseBI	CCWGG	5 cut(s)	444, 831, 897, 1191, 2728
BseDI	CCNNGG	6 cut(s)	125, 829, 1197, 1678, 2116, 2334
BseGI	GGATG	6 cut(s)	61, 521, 949, 1833, 2033, 2768
BseJI	GATNNNNATC	1 cut(s)	1224
BseLI	CCNNNNNNNGG	9 cut(s)	739, 902, 1976, 2200, 2414, 2540, 2670, 2673, 2920
BseMII	CTCAG	9 cut(s)	651, 774, 1155, 1229, 1761, 2100, 2574, 2640, 2907
BseNI	ACTGG	5 cut(s)	697, 1604, 1825, 2424, 2772
BsePI	GCGCGC	1 cut(s)	47
BseRI	GAGGAG	4 cut(s)	986, 1203, 1394, 1410
BseSI	GKGCMC	1 cut(s)	830
BseX3I	CGGCCG	1 cut(s)	2491
BsgI	GTGCAG	1 cut(s)	2388
Bsh1236I	CGCG	4 cut(s)	49, 51, 810, 1613
Bsh1285I	CGRYCG	1 cut(s)	2494
BshFI	GGCC	9 cut(s)	176, 430, 476, 828, 1159, 1489, 2114, 2185, 2493
BshNI	GGYRCC	1 cut(s)	2676
BsiEI	CGRYCG	1 cut(s)	2494
BsiHKAI	GWGCWC	4 cut(s)	847, 916, 1057, 1741
BsiHKCI	CYCGRG	2 cut(s)	2267, 2366
BsiSI	CCGG	6 cut(s)	73, 102, 473, 1199, 1991, 2494
BslFI	GGGAC	4 cut(s)	361, 1179, 1190, 2468
BslI	CCNNNNNNNGG	9 cut(s)	739, 902, 1976, 2200, 2414, 2540, 2670, 2673, 2920
BsmAI	GTCTC	6 cut(s)	968, 1160, 1437, 2079, 2582, 2880
BsmBI	CGTCTC	1 cut(s)	968
BsmFI	GGGAC	4 cut(s)	361, 1179, 1190, 2468
BsnI	GGCC	9 cut(s)	176, 430, 476, 828, 1159, 1489, 2114, 2185, 2493
BsoBI	CYCGRG	2 cut(s)	2267, 2366
Bsp120I	GGGCCC	1 cut(s)	826
Bsp1286I	GDGCHC	5 cut(s)	830, 847, 916, 1057, 1741
Bsp68I	TCGCGA	1 cut(s)	1613
BspACI	CCGC	5 cut(s)	112, 183, 520, 2363, 2674
BspANI	GGCC	9 cut(s)	176, 430, 476, 828, 1159, 1489, 2114, 2185, 2493
BspCNI	CTCAG	9 cut(s)	652, 775, 1156, 1228, 1762, 2101, 2573, 2639, 2908
BspFNI	CGCG	4 cut(s)	49, 51, 810, 1613
BspHI	TCATGA	2 cut(s)	649, 1351
BspLI	GGNNCC	9 cut(s)	175, 827, 828, 1195, 1995, 2361, 2532, 2678, 2824
BspMAI	CTGCAG	2 cut(s)	388, 1768
BspMI	ACCTGC	2 cut(s)	1040, 2306
BspT107I	GGYRCC	1 cut(s)	2676
BspTI	CTTAAG	1 cut(s)	1664
BsrFI	RCCGGY	1 cut(s)	1990
BsrI	ACTGG	5 cut(s)	697, 1604, 1825, 2424, 2772
BssAI	RCCGGY	1 cut(s)	1990
BssECI	CCNNGG	6 cut(s)	125, 829, 1197, 1678, 2116, 2334
BssHII	GCGCGC	1 cut(s)	47
BssNI	GRCGYC	3 cut(s)	60, 1927, 2734
BssSI	CACGAG	2 cut(s)	1734, 2829
BssT1I	CCWWGG	4 cut(s)	125, 1678, 2116, 2334
Bst2BI	CACGAG	2 cut(s)	1734, 2829
Bst2UI	CCWGG	5 cut(s)	444, 831, 897, 1191, 2728
Bst4CI	ACNGT	5 cut(s)	214, 1236, 1953, 2306, 2447
Bst6I	CTCTTC	2 cut(s)	1385, 2226
BstACI	GRCGYC	3 cut(s)	60, 1927, 2734
BstAFI	CTTAAG	1 cut(s)	1664
BstAPI	GCANNNNNTGC	3 cut(s)	566, 745, 1736
BstBAI	YACGTR	1 cut(s)	1903
BstC8I	GCNNGC	7 cut(s)	49, 199, 630, 681, 777, 1857, 1986
BstENI	CCTNNNNNAGG	2 cut(s)	2198, 2412
BstF5I	GGATG	6 cut(s)	61, 521, 949, 1833, 2033, 2768
BstFNI	CGCG	4 cut(s)	49, 51, 810, 1613
BstH2I	RGCGCY	1 cut(s)	2725
BstHHI	GCGC	3 cut(s)	49, 51, 2724
BstMAI	GTCTC	6 cut(s)	968, 1160, 1437, 2079, 2582, 2880
BstMCI	CGRYCG	1 cut(s)	2494
BstNI	CCWGG	5 cut(s)	444, 831, 897, 1191, 2728
BstNSI	RCATGY	2 cut(s)	407, 779
BstSCI	CCNGG	7 cut(s)	442, 829, 895, 1189, 1197, 2493, 2726
BstSFI	CTRYAG	6 cut(s)	384, 486, 1116, 1533, 1764, 2642
BstSLI	GKGCMC	1 cut(s)	830
BstUI	CGCG	4 cut(s)	49, 51, 810, 1613
BstV2I	GAAGAC	4 cut(s)	24, 246, 693, 2367
BstX2I	RGATCY	4 cut(s)	742, 1186, 1288, 2822
BstYI	RGATCY	4 cut(s)	742, 1186, 1288, 2822
BstZI	CGGCCG	1 cut(s)	2491
Bsu36I	CCTNAGG	2 cut(s)	1215, 2109
BsuI	GTATCC	1 cut(s)	2230
BsuRI	GGCC	9 cut(s)	176, 430, 476, 828, 1159, 1489, 2114, 2185, 2493
BtsCI	GGATG	6 cut(s)	61, 521, 949, 1833, 2033, 2768
BtsIMutI	CAGTG	3 cut(s)	219, 2431, 2779
BtuMI	TCGCGA	1 cut(s)	1613
BveI	ACCTGC	2 cut(s)	1040, 2306
Cac8I	GCNNGC	7 cut(s)	49, 199, 630, 681, 777, 1857, 1986
CaiI	CAGNNNCTG	1 cut(s)	745
CciI	TCATGA	2 cut(s)	649, 1351
CfoI	GCGC	3 cut(s)	49, 51, 2724
Cfr10I	RCCGGY	1 cut(s)	1990
Cfr13I	GGNCC	8 cut(s)	174, 446, 826, 827, 1157, 1193, 2113, 2636
CseI	GACGC	1 cut(s)	1916
Csp6I	GTAC	7 cut(s)	467, 725, 1136, 1518, 1555, 1675, 2448
CspCI	CAANNNNNGTGG	2 cut(s)	2131, 2166
CviAII	CATG	8 cut(s)	404, 650, 749, 776, 1015, 1352, 1628, 2395
CviQI	GTAC	7 cut(s)	467, 725, 1136, 1518, 1555, 1675, 2448
DraI	TTTAAA	1 cut(s)	2659
DrdI	GACNNNNNNGTC	1 cut(s)	250
DseDI	GACNNNNNNGTC	1 cut(s)	250
EaeI	YGGCCR	2 cut(s)	474, 2491
EagI	CGGCCG	1 cut(s)	2491
Eam1104I	CTCTTC	2 cut(s)	1385, 2226
EarI	CTCTTC	2 cut(s)	1385, 2226
EciI	GGCGGA	1 cut(s)	2352
EclXI	CGGCCG	1 cut(s)	2491
Eco130I	CCWWGG	4 cut(s)	125, 1678, 2116, 2334
Eco147I	AGGCCT	2 cut(s)	1489, 2185
Eco24I	GRGCYC	1 cut(s)	830
Eco32I	GATATC	1 cut(s)	2792
Eco47I	GGWCC	3 cut(s)	446, 1193, 2636
Eco47III	AGCGCT	1 cut(s)	2723
Eco52I	CGGCCG	1 cut(s)	2491
Eco57I	CTGAAG	5 cut(s)	294, 527, 954, 1005, 1535
Eco81I	CCTNAGG	2 cut(s)	1215, 2109
Eco88I	CYCGRG	2 cut(s)	2267, 2366
EcoNI	CCTNNNNNAGG	2 cut(s)	2198, 2412
EcoO109I	RGGNCCY	5 cut(s)	174, 826, 827, 1193, 2636
EcoRI	GAATTC	1 cut(s)	2398
EcoRII	CCWGG	5 cut(s)	442, 829, 895, 1189, 2726
EcoRV	GATATC	1 cut(s)	2792
EcoT14I	CCWWGG	4 cut(s)	125, 1678, 2116, 2334
EcoT38I	GRGCYC	1 cut(s)	830
ErhI	CCWWGG	4 cut(s)	125, 1678, 2116, 2334
Esp3I	CGTCTC	1 cut(s)	968
FaeI	CATG	8 cut(s)	407, 653, 752, 779, 1018, 1355, 1631, 2398
FalI	AAGNNNNNCTT	4 cut(s)	1671, 1703, 2192, 2224
FaqI	GGGAC	4 cut(s)	361, 1179, 1190, 2468
FatI	CATG	8 cut(s)	403, 649, 748, 775, 1014, 1351, 1627, 2394
FauNDI	CATATG	2 cut(s)	562, 1719
FbaI	TGATCA	2 cut(s)	1011, 2776
FblI	GTMKAC	1 cut(s)	2737
FokI	GGATG	6 cut(s)	68, 528, 956, 1840, 2020, 2755
FriOI	GRGCYC	1 cut(s)	830
FspBI	CTAG	5 cut(s)	305, 582, 1170, 1713, 2799
GlaI	GCGC	3 cut(s)	48, 50, 2723
GsuI	CTGGAG	2 cut(s)	1842, 2710
HaeII	RGCGCY	1 cut(s)	2725
HaeIII	GGCC	9 cut(s)	176, 430, 476, 828, 1159, 1489, 2114, 2185, 2493
HapII	CCGG	6 cut(s)	73, 102, 473, 1199, 1991, 2494
HgaI	GACGC	1 cut(s)	1916
HhaI	GCGC	3 cut(s)	49, 51, 2724
Hin1I	GRCGYC	3 cut(s)	60, 1927, 2734
Hin1II	CATG	8 cut(s)	407, 653, 752, 779, 1018, 1355, 1631, 2398
Hin6I	GCGC	3 cut(s)	47, 49, 2722
HinP1I	GCGC	3 cut(s)	47, 49, 2722
HincII	GTYRAC	3 cut(s)	64, 2191, 2738
HindII	GTYRAC	3 cut(s)	64, 2191, 2738
HindIII	AAGCTT	2 cut(s)	588, 1178
HpaII	CCGG	6 cut(s)	73, 102, 473, 1199, 1991, 2494
HphI	GGTGA	3 cut(s)	1926, 2168, 2330
Hpy166II	GTNNAC	5 cut(s)	64, 378, 1900, 2191, 2738
Hpy8I	GTNNAC	5 cut(s)	64, 378, 1900, 2191, 2738
Hpy99I	CGWCG	4 cut(s)	14, 92, 2736, 2739
HpyAV	CCTTC	8 cut(s)	146, 326, 567, 1539, 1630, 1941, 2269, 2914
HpyCH4III	ACNGT	5 cut(s)	214, 1236, 1953, 2306, 2447
HpyCH4IV	ACGT	4 cut(s)	60, 977, 1902, 2734
HpySE526I	ACGT	4 cut(s)	60, 977, 1902, 2734
Hsp92I	GRCGYC	3 cut(s)	60, 1927, 2734
Hsp92II	CATG	8 cut(s)	407, 653, 752, 779, 1018, 1355, 1631, 2398
HspAI	GCGC	3 cut(s)	47, 49, 2722
Ksp22I	TGATCA	2 cut(s)	1011, 2776
LweI	GCATC	8 cut(s)	556, 919, 1085, 1528, 1590, 1870, 2088, 2122
MaeI	CTAG	5 cut(s)	305, 582, 1170, 1713, 2799
MaeII	ACGT	4 cut(s)	60, 977, 1902, 2734
MaeIII	GTNAC	4 cut(s)	2318, 2543, 2555, 2855
MflI	RGATCY	4 cut(s)	742, 1186, 1288, 2822
MhlI	GDGCHC	5 cut(s)	830, 847, 916, 1057, 1741
MluI	ACGCGT	1 cut(s)	808
MlyI	GAGTC	5 cut(s)	629, 1471, 1694, 2081, 2882
MmeI	TCCRAC	3 cut(s)	33, 212, 1318
MroXI	GAANNNNTTC	2 cut(s)	645, 1619
MslI	CAYNNNNRTG	1 cut(s)	552
MspA1I	CMGCKG	4 cut(s)	383, 628, 1769, 2138
MspCI	CTTAAG	1 cut(s)	1664
MspI	CCGG	6 cut(s)	73, 102, 473, 1199, 1991, 2494
MspR9I	CCNGG	7 cut(s)	444, 831, 897, 1191, 1199, 2495, 2728
MvaI	CCWGG	5 cut(s)	444, 831, 897, 1191, 2728
MvnI	CGCG	4 cut(s)	49, 51, 810, 1613
NciI	CCSGG	2 cut(s)	1199, 2495
NdeI	CATATG	2 cut(s)	562, 1719
NlaIII	CATG	8 cut(s)	407, 653, 752, 779, 1018, 1355, 1631, 2398
NlaIV	GGNNCC	9 cut(s)	175, 827, 828, 1195, 1995, 2361, 2532, 2678, 2824
NmeAIII	GCCGAG	1 cut(s)	2611
NmuCI	GTSAC	2 cut(s)	2318, 2855
NruI	TCGCGA	1 cut(s)	1613
NspI	RCATGY	2 cut(s)	407, 779
PaeI	GCATGC	1 cut(s)	779
PagI	TCATGA	2 cut(s)	649, 1351
PaqCI	CACCTGC	2 cut(s)	1040, 2306
PauI	GCGCGC	1 cut(s)	47
PceI	AGGCCT	2 cut(s)	1489, 2185
PdmI	GAANNNNTTC	2 cut(s)	645, 1619
PfoI	TCCNGGA	1 cut(s)	442
PleI	GAGTC	5 cut(s)	629, 1470, 1694, 2081, 2882
PpsI	GAGTC	5 cut(s)	629, 1470, 1694, 2081, 2882
Ppu21I	YACGTR	1 cut(s)	1903
PpuMI	RGGWCCY	2 cut(s)	1193, 2636
Psp5II	RGGWCCY	2 cut(s)	1193, 2636
Psp6I	CCWGG	5 cut(s)	442, 829, 895, 1189, 2726
PspGI	CCWGG	5 cut(s)	442, 829, 895, 1189, 2726
PspN4I	GGNNCC	9 cut(s)	175, 827, 828, 1195, 1995, 2361, 2532, 2678, 2824
PspOMI	GGGCCC	1 cut(s)	826
PspPI	GGNCC	8 cut(s)	174, 446, 826, 827, 1157, 1193, 2113, 2636
PspPPI	RGGWCCY	2 cut(s)	1193, 2636
PstI	CTGCAG	2 cut(s)	388, 1768
PstNI	CAGNNNCTG	1 cut(s)	745
PsuI	RGATCY	4 cut(s)	742, 1186, 1288, 2822
PteI	GCGCGC	1 cut(s)	47
PvuII	CAGCTG	4 cut(s)	383, 628, 1769, 2138
RruI	TCGCGA	1 cut(s)	1613
RsaI	GTAC	7 cut(s)	468, 726, 1137, 1519, 1556, 1676, 2449
RsaNI	GTAC	7 cut(s)	467, 725, 1136, 1518, 1555, 1675, 2448
RseI	CAYNNNNRTG	1 cut(s)	552
SalI	GTCGAC	1 cut(s)	2736
Sau96I	GGNCC	8 cut(s)	174, 446, 826, 827, 1157, 1193, 2113, 2636
ScaI	AGTACT	1 cut(s)	2449
SchI	GAGTC	5 cut(s)	629, 1471, 1694, 2081, 2882
ScrFI	CCNGG	7 cut(s)	444, 831, 897, 1191, 1199, 2495, 2728
SduI	GDGCHC	5 cut(s)	830, 847, 916, 1057, 1741
SfaNI	GCATC	8 cut(s)	556, 919, 1085, 1528, 1590, 1870, 2088, 2122
SfcI	CTRYAG	6 cut(s)	384, 486, 1116, 1533, 1764, 2642
SinI	GGWCC	3 cut(s)	446, 1193, 2636
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	7 cut(s)	1294, 1513, 1664, 1742, 1869, 1875, 2668
SmoI	CTYRAG	7 cut(s)	1294, 1513, 1664, 1742, 1869, 1875, 2668
SphI	GCATGC	1 cut(s)	779
SseBI	AGGCCT	2 cut(s)	1489, 2185
SsiI	CCGC	5 cut(s)	112, 183, 520, 2363, 2674
SspMI	CTAG	5 cut(s)	305, 582, 1170, 1713, 2799
StuI	AGGCCT	2 cut(s)	1489, 2185
StyD4I	CCNGG	7 cut(s)	442, 829, 895, 1189, 1197, 2493, 2726
StyI	CCWWGG	4 cut(s)	125, 1678, 2116, 2334
TaaI	ACNGT	5 cut(s)	214, 1236, 1953, 2306, 2447
TaiI	ACGT	4 cut(s)	63, 980, 1905, 2737
TaqI	TCGA	8 cut(s)	221, 397, 529, 571, 969, 1267, 1690, 2737
TaqII	GACCGA	1 cut(s)	2802
TatI	WGTACW	4 cut(s)	724, 1517, 1554, 2447
TauI	GCSGC	2 cut(s)	523, 2677
TscAI	CASTG	3 cut(s)	219, 2431, 2779
TseFI	GTSAC	2 cut(s)	2318, 2855
Tsp45I	GTSAC	2 cut(s)	2318, 2855
TspGWI	ACGGA	2 cut(s)	48, 76
TspRI	CASTG	3 cut(s)	219, 2431, 2779
Vha464I	CTTAAG	1 cut(s)	1664
VpaK11BI	GGWCC	3 cut(s)	446, 1193, 2636
XagI	CCTNNNNNAGG	2 cut(s)	2198, 2412
XapI	RAATTY	8 cut(s)	664, 1081, 1148, 1473, 1832, 2398, 2439, 2654
XbaI	TCTAGA	1 cut(s)	304
XceI	RCATGY	2 cut(s)	407, 779
XmiI	GTMKAC	1 cut(s)	2737
XmnI	GAANNNNTTC	2 cut(s)	645, 1619
XspI	CTAG	5 cut(s)	305, 582, 1170, 1713, 2799
ZraI	GACGTC	2 cut(s)	61, 2735
ZrmI	AGTACT	1 cut(s)	2449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.