Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8404991.1

Orthogroup ID

OG0012025

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1060

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8404991.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 385 bp

atgcctcaacctgaggcccaaggaataagcaaagatgcagctgacaatgaaagtggtggtgaggtggaagttgaaaatgtggagaggcctgttgacctttacaaggctatcttttctgatgattcagatgatgaagaggatacctctattcctaatgaagttggtaatcccgagaagaaggttgaagcagctaatacaacattaaaccgtttaattgcaggtgactttttggaatccttgggtaaagaacttggcttagaggttccgcccgagttgtcttcctcaacaaacaaagccatgaattctgcacctcccaaagaaactgccagtgccaattcaagaatttacagtacttattcagttgaagattcttccactcttaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009888 GO:0009892 GO:0009987 GO:0010033 GO:0010087 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070878 GO:0070883 GO:0070887 GO:0070918 GO:0071013 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1604 Surp

Protein Analysis

128

Amino Acids

13.71

Weight (kDa)

4.08

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012025)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23080 AT5G23080
fragaria_vesca	FvH4_5g12911 FvH4_5g12911
malus_domestica	MD06G1209200.v1.1 MD14G1219700.v1.1
prunus_persica	Prupe.5G214300_v2.0.a1
pyrus_communis	pycom06g18680 pycom14g18200
rosa_chinensis	RchiOBHm_Chr7g0184311
rosa_laevigata	RLG00000004987
rosa_multiflora	Rmu_co8385771.1_g000001 Rmu_co8404991.1_g000001
rosa_roxburghii	Rroxscaffold_3G00269740
rosa_samantha	Rh7AG081200 Rh7BG066100 Rh7CG066400 Rh7DG066100
rosa_wichuraiana	Rw7G005420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	209
Acc36I	ACCTGC	1 cut(s)	209
AciI	CCGC	1 cut(s)	266
AcsI	RAATTY	2 cut(s)	301, 342
AfaI	GTAC	1 cut(s)	352
AfiI	CCNNNNNNNGG	1 cut(s)	103
AgsI	TTSAA	4 cut(s)	74, 185, 339, 365
AluBI	AGCT	2 cut(s)	41, 191
AluI	AGCT	2 cut(s)	41, 191
Ama87I	CYCGRG	2 cut(s)	170, 269
AoxI	GGCC	2 cut(s)	15, 86
ApeKI	GCWGC	2 cut(s)	38, 188
ApoI	RAATTY	2 cut(s)	301, 342
AspS9I	GGNCC	1 cut(s)	16
AsuHPI	GGTGA	2 cut(s)	71, 233
AvaI	CYCGRG	2 cut(s)	170, 269
AxyI	CCTNAGG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	50, 200
BciVI	GTATCC	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	2 cut(s)	39, 189
BlsI	GCNGC	2 cut(s)	40, 190
BmcAI	AGTACT	1 cut(s)	352
BmeT110I	CYCGRG	2 cut(s)	170, 269
BmgT120I	GGNCC	1 cut(s)	16
BmiI	GGNNCC	1 cut(s)	264
BmsI	GCATC	1 cut(s)	25
BpiI	GAAGAC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BsaJI	CCNNGG	2 cut(s)	19, 237
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	327
Bse21I	CCTNAGG	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	19, 237
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	50, 200
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	2 cut(s)	17, 88
BsiHKCI	CYCGRG	2 cut(s)	170, 269
BslI	CCNNNNNNNGG	1 cut(s)	103
BsnI	GGCC	2 cut(s)	17, 88
BsoBI	CYCGRG	2 cut(s)	170, 269
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	2 cut(s)	17, 88
BspCNI	CTCAG	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	19, 237
BssT1I	CCWWGG	2 cut(s)	19, 237
Bst4CI	ACNGT	2 cut(s)	209, 350
Bst6I	CTCTTC	1 cut(s)	129
BstDEI	CTNAG	2 cut(s)	12, 256
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstV1I	GCAGC	2 cut(s)	50, 200
BstV2I	GAAGAC	1 cut(s)	270
Bsu36I	CCTNAGG	1 cut(s)	12
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	17, 88
BtsIMutI	CAGTG	1 cut(s)	334
BveI	ACCTGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	351
CspCI	CAANNNNNGTGG	2 cut(s)	34, 69
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	7 cut(s)	17, 41, 88, 107, 191, 255, 296
CviKI_1	RGCY	7 cut(s)	17, 41, 88, 107, 191, 255, 296
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	12, 256
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	255
Eco130I	CCWWGG	2 cut(s)	19, 237
Eco147I	AGGCCT	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	12
Eco88I	CYCGRG	2 cut(s)	170, 269
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	301
EcoT14I	CCWWGG	2 cut(s)	19, 237
ErhI	CCWWGG	2 cut(s)	19, 237
FaeI	CATG	1 cut(s)	301
FaiI	YATR	1 cut(s)	299
FalI	AAGNNNNNCTT	2 cut(s)	95, 127
FatI	CATG	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	39, 189
Fsp4HI	GCNGC	2 cut(s)	39, 189
GluI	GCNGC	2 cut(s)	39, 189
HaeIII	GGCC	2 cut(s)	17, 88
Hin1II	CATG	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	3 cut(s)	122, 233, 368
HphI	GGTGA	2 cut(s)	71, 233
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	2 cut(s)	118, 127
Hpy188III	TCNNGA	2 cut(s)	170, 339
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	2 cut(s)	209, 350
HpyCH4V	TGCA	3 cut(s)	38, 218, 308
HpyF3I	CTNAG	2 cut(s)	12, 256
Hsp92II	CATG	1 cut(s)	301
LpnPI	CCDG	4 cut(s)	24, 102, 204, 340
Lsp1109I	GCAGC	2 cut(s)	50, 200
LweI	GCATC	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	221
MboII	GAAGA	5 cut(s)	146, 187, 270, 363, 377
MluCI	AATT	4 cut(s)	213, 301, 334, 342
MnlI	CCTC	9 cut(s)	7, 15, 55, 78, 130, 154, 253, 292, 321
MseI	TTAA	3 cut(s)	203, 212, 381
MspA1I	CMGCKG	1 cut(s)	41
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	221
PaqCI	CACCTGC	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	122, 233, 368
PkrI	GCNGC	2 cut(s)	40, 190
PspN4I	GGNNCC	1 cut(s)	264
PspPI	GGNCC	1 cut(s)	16
PvuII	CAGCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SaqAI	TTAA	3 cut(s)	203, 212, 381
SatI	GCNGC	2 cut(s)	39, 189
Sau96I	GGNCC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	352
SfaNI	GCATC	1 cut(s)	25
Sse9I	AATT	4 cut(s)	213, 301, 334, 342
SseBI	AGGCCT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	266
StuI	AGGCCT	1 cut(s)	88
StyI	CCWWGG	2 cut(s)	19, 237
TaaI	ACNGT	2 cut(s)	209, 350
TasI	AATT	4 cut(s)	213, 301, 334, 342
TatI	WGTACW	1 cut(s)	350
TfiI	GAWTC	3 cut(s)	122, 233, 368
Tru1I	TTAA	3 cut(s)	203, 212, 381
Tru9I	TTAA	3 cut(s)	203, 212, 381
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	2 cut(s)	38, 188
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	4 cut(s)	63, 147, 171, 314
TspRI	CASTG	1 cut(s)	334
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	2 cut(s)	301, 342
ZrmI	AGTACT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.