Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014077

Physical Location & Seq

Genomic Coordinates Forward (+)

7783673 .. 7785547

Gene Structure 1875 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G23140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGATGAGGGGTCTCGTTTCCGGCGCCAAGATGCTATCATCAACCCCATCGTCGATGGCGACAAGCATCGCCACTGGTAGAAGAAGCTACAGTCTGATTCCGATGGTTATTGAGCACTCATCGCGAGGAGAGAGAGCTTACGACATCTTCTCTCGTTTGCTCAAGGAGCGTATTATCTGCATCAACGGTCCCATTAATGACGACACATCTCACGTCGTCGTCGCTCAGCTTCTTTACCTCGAGTCTGAGAATCCTTCGAAGCCGATCCATATGTATCTCAATTCCCCTGGCGGCCATGTCACCGCCGGTCTTGCAATTTATGATACTATGCAGTACATTCGTTCTCCTATTAGCACAATTTGTTTGGGTCAGGCTGCATCAATGGCTTCTCTTCTGTTGGCAGCGGGTGCCAAGGGGCAAAGGCGGTCACTTCCAAATGCAACTGTTATGATTCATCAGCCTTCAGGAGGATATAGTGGACAGGCTAAAGATATAACGATTCATACAAAACAGATTGTTCGTGTGTGGGATGCGTTAAATGAATTGTATGTCAAACACACGGGTCAACCTCTTGACGTGGTTGCGAATAACATGGATAGGGATCATTTCATGACTCCTGAAGAGGCTAAGGCGTTTGGAATAATCGATGAAGTGATTGATGAAAGACCGTTGGAGTTGGTGAAAGATGCAGTTGGAAATGAAAGCAAAGATAAGAGTTCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008270 GO:0009368 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050897 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

241

Amino Acids

26.28

Weight (kDa)

6.71

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	42 - 221	4.1e-81	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23140
fragaria_vesca	FvH4_4g36920
malus_domestica	MD13G1005300.v1.1 MD16G1002600.v1.1
prunus_persica	Prupe.1G347500_v2.0.a1
pyrus_communis	pycom13g00450 pycom16g00330
rosa_chinensis	RchiOBHm_Chr4g0446681
rosa_laevigata	RLG00000005640
rosa_multiflora	Rmu_sc0001753.1_g000041
rosa_roxburghii	Rroxscaffold_5G00387040
rosa_rugosa	Rorug04G0373600
rosa_samantha	Rh4AG435100 Rh4BG444100 Rh4CG461400 Rh4DG442900
rosa_wichuraiana	Rw4G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	23, 407
AccII	CGCG	1 cut(s)	124
AciI	CCGC	4 cut(s)	291, 303, 404, 424
AclWI	GGATC	2 cut(s)	259, 609
AcoI	YGGCCR	1 cut(s)	292
AcuI	CTGAAG	2 cut(s)	447, 639
AcyI	GRCGYC	1 cut(s)	24
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	1 cut(s)	720
AjiI	CACGTC	2 cut(s)	214, 577
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	3 cut(s)	87, 137, 229
AluI	AGCT	3 cut(s)	87, 137, 229
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	2 cut(s)	259, 609
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	2 cut(s)	374, 401
AseI	ATTAAT	1 cut(s)	195
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	292, 691
AsuII	TTCGAA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	188
BanI	GGYRCC	2 cut(s)	23, 407
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	361, 413
BccI	CCATC	3 cut(s)	49, 55, 97
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	17
BfmI	CTRYAG	1 cut(s)	88
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	3 cut(s)	292, 375, 402
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	3 cut(s)	293, 376, 403
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	188
BmeT110I	CYCGRG	1 cut(s)	239
BmgBI	CACGTC	2 cut(s)	214, 577
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	3 cut(s)	25, 190, 409
BmrFI	CCNGG	1 cut(s)	288
BmsI	GCATC	6 cut(s)	21, 75, 189, 386, 520, 676
Bpu10I	CCTNAGC	1 cut(s)	627
Bpu1102I	GCTNAGC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	146
Bsa29I	ATCGAT	1 cut(s)	645
BsaBI	GATNNNNATC	1 cut(s)	600
BsaHI	GRCGYC	1 cut(s)	24
BsaI	GGTCTC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	286, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	600
BseBI	CCWGG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	645
BseDI	CCNNGG	2 cut(s)	286, 411
BseGI	GGATG	1 cut(s)	535
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMII	CTCAG	2 cut(s)	237, 239
BseNI	ACTGG	1 cut(s)	79
BseRI	GAGGAG	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	361, 413
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	294
BshNI	GGYRCC	2 cut(s)	23, 407
BshVI	ATCGAT	1 cut(s)	645
BsiHKAI	GWGCWC	1 cut(s)	117
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	2 cut(s)	21, 306
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	467
BsmAI	GTCTC	1 cut(s)	17
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	294
Bso31I	GGTCTC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	264, 601
Bsp1720I	GCTNAGC	1 cut(s)	225
Bsp68I	TCGCGA	1 cut(s)	124
BspACI	CCGC	4 cut(s)	291, 303, 404, 424
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	238, 238
BspDI	ATCGAT	1 cut(s)	645
BspFNI	CGCG	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	609
BspLI	GGNNCC	3 cut(s)	25, 190, 409
BspPI	GGATC	2 cut(s)	259, 609
BspT104I	TTCGAA	1 cut(s)	257
BspT107I	GGYRCC	2 cut(s)	23, 407
BspTNI	GGTCTC	1 cut(s)	17
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	2 cut(s)	286, 411
BssMI	GATC	2 cut(s)	264, 601
BssNI	GRCGYC	1 cut(s)	24
BssT1I	CCWWGG	1 cut(s)	411
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	4 cut(s)	92, 188, 445, 669
Bst6I	CTCTTC	2 cut(s)	396, 615
BstACI	GRCGYC	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBI	TTCGAA	1 cut(s)	257
BstDEI	CTNAG	3 cut(s)	225, 246, 627
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	535
BstFNI	CGCG	1 cut(s)	124
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	267, 604
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	264, 601
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 166, 311, 383, 407
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	88
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	361, 413
Bsu15I	ATCGAT	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	294
BsuTUI	ATCGAT	1 cut(s)	645
BtgZI	GCGATG	2 cut(s)	52, 105
BtrI	CACGTC	2 cut(s)	214, 577
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	72
BtuMI	TCGCGA	1 cut(s)	124
CciI	TCATGA	1 cut(s)	609
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	645
Csp6I	GTAC	1 cut(s)	334
CviAII	CATG	3 cut(s)	296, 592, 610
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	3 cut(s)	225, 246, 627
DinI	GGCGCC	1 cut(s)	25
DpnI	GATC	2 cut(s)	266, 603
DpnII	GATC	2 cut(s)	264, 601
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	396, 615
EarI	CTCTTC	2 cut(s)	396, 615
Eco130I	CCWWGG	1 cut(s)	411
Eco31I	GGTCTC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	447, 639
Eco88I	CYCGRG	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	411
EgeI	GGCGCC	1 cut(s)	25
EheI	GGCGCC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	411
FaeI	CATG	3 cut(s)	299, 595, 613
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	3 cut(s)	295, 591, 609
FauI	CCCGC	1 cut(s)	397
FauNDI	CATATG	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	292, 375, 402
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	3 cut(s)	292, 375, 402
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	292, 375, 402
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	2 cut(s)	21, 306
HhaI	GCGC	1 cut(s)	26
Hin1I	GRCGYC	1 cut(s)	24
Hin1II	CATG	3 cut(s)	299, 595, 613
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	566
HindII	GTYRAC	1 cut(s)	566
HinfI	GANTC	6 cut(s)	97, 242, 250, 451, 499, 613
HpaII	CCGG	2 cut(s)	21, 306
HphI	GGTGA	2 cut(s)	292, 691
Hpy166II	GTNNAC	2 cut(s)	479, 566
Hpy188I	TCNGA	3 cut(s)	96, 102, 247
Hpy188III	TCNNGA	5 cut(s)	123, 465, 572, 610, 617
Hpy8I	GTNNAC	2 cut(s)	479, 566
Hpy99I	CGWCG	4 cut(s)	55, 218, 221, 224
HpyAV	CCTTC	2 cut(s)	264, 471
HpyCH4III	ACNGT	4 cut(s)	92, 188, 445, 669
HpyCH4IV	ACGT	2 cut(s)	213, 576
HpyCH4V	TGCA	6 cut(s)	180, 314, 331, 377, 440, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 166, 311, 383, 407
HpyF3I	CTNAG	3 cut(s)	225, 246, 627
HpySE526I	ACGT	2 cut(s)	213, 576
Hsp92I	GRCGYC	1 cut(s)	24
Hsp92II	CATG	3 cut(s)	299, 595, 613
HspAI	GCGC	1 cut(s)	24
KasI	GGCGCC	1 cut(s)	23
Kzo9I	GATC	2 cut(s)	264, 601
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	9 cut(s)	34, 60, 273, 300, 319, 356, 450, 467, 630
Lsp1109I	GCAGC	2 cut(s)	361, 413
LweI	GCATC	6 cut(s)	21, 75, 189, 386, 520, 676
MaeII	ACGT	2 cut(s)	213, 576
MaeIII	GTNAC	2 cut(s)	298, 426
MalI	GATC	2 cut(s)	266, 603
MboI	GATC	2 cut(s)	264, 601
MboII	GAAGA	4 cut(s)	93, 139, 383, 632
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	4 cut(s)	280, 315, 357, 542
Mly113I	GGCGCC	1 cut(s)	24
MlyI	GAGTC	2 cut(s)	251, 607
MmeI	TCCRAC	2 cut(s)	651, 673
MnlI	CCTC	5 cut(s)	119, 248, 461, 579, 616
MseI	TTAA	2 cut(s)	195, 536
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	2 cut(s)	21, 306
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	5 cut(s)	121, 166, 311, 383, 407
NarI	GGCGCC	1 cut(s)	24
NdeI	CATATG	1 cut(s)	270
NdeII	GATC	2 cut(s)	264, 601
NlaIII	CATG	3 cut(s)	299, 595, 613
NlaIV	GGNNCC	3 cut(s)	25, 190, 409
NmuCI	GTSAC	2 cut(s)	298, 426
NruI	TCGCGA	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	239
PagI	TCATGA	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	56
PfeI	GAWTC	4 cut(s)	97, 250, 451, 499
PkrI	GCNGC	3 cut(s)	293, 376, 403
PleI	GAGTC	2 cut(s)	250, 607
PluTI	GGCGCC	1 cut(s)	27
PpsI	GAGTC	2 cut(s)	250, 607
PshBI	ATTAAT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	25, 190, 409
PspPI	GGNCC	1 cut(s)	188
PspXI	VCTCGAGB	1 cut(s)	239
RruI	TCGCGA	1 cut(s)	124
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	195, 536
SatI	GCNGC	3 cut(s)	292, 375, 402
Sau3AI	GATC	2 cut(s)	264, 601
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	2 cut(s)	251, 607
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	7 cut(s)	89, 139, 216, 231, 240, 571, 579
SfaNI	GCATC	6 cut(s)	21, 75, 189, 386, 520, 676
SfcI	CTRYAG	1 cut(s)	88
SfoI	GGCGCC	1 cut(s)	25
Sfr274I	CTCGAG	1 cut(s)	239
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	239
SmlI	CTYRAG	2 cut(s)	161, 239
SmoI	CTYRAG	2 cut(s)	161, 239
Sse9I	AATT	4 cut(s)	280, 315, 357, 542
SsiI	CCGC	4 cut(s)	291, 303, 404, 424
SspDI	GGCGCC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	286
StyI	CCWWGG	1 cut(s)	411
TaaI	ACNGT	4 cut(s)	92, 188, 445, 669
TaiI	ACGT	2 cut(s)	216, 579
TaqI	TCGA	4 cut(s)	53, 240, 257, 645
TasI	AATT	4 cut(s)	280, 315, 357, 542
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	294
TfiI	GAWTC	4 cut(s)	97, 250, 451, 499
Tru1I	TTAA	2 cut(s)	195, 536
Tru9I	TTAA	2 cut(s)	195, 536
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	2 cut(s)	298, 426
TseI	GCWGC	2 cut(s)	374, 401
Tsp45I	GTSAC	2 cut(s)	298, 426
TspDTI	ATGAA	7 cut(s)	443, 491, 555, 598, 663, 675, 714
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	188
VspI	ATTAAT	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	465
XhoI	CTCGAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.