Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014077

Physical Location & Seq

Genomic Coordinates Forward (+)

278261 .. 281226

Gene Structure 2966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g00450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGTATAGGTCCAGTGGTATTAACAAAACCCCCAACTCCTTAACCCGACCACATAGGAACCCGACCAACCCAGATCCTAAAACACAAAAACACAGTGCCTCGAACACTTCGAGGGTTCGAGTACCGTTTGAACCCATAAAACCTATCCATCGTCTGCGAATCCCTCCCCTCGTTTCTGTCATTATGAGAGGCTTAATCTCAAAGGCGAAGCTCCTGGCAAGCAGCAGGCCATGGCGCCCATCTCTGCGCAGCTACAGCTTGATCCCCATGGTCATTGAGCACTCCTCCCGAGGGGAACGCGCGTACGACATCTTCTCCCGCCTCCTCAAAGAGCCGATCATTTGCATCAACGGACCCATCGACGACGACACTTCCCACGTTGTCGTCGCGCAGCTTCTCTACTTGGAATCCGAGAACCCGTCGAAGCCCATCCACATGTACCTCAATTCCCCCGGTGGTCACGTCACTGCAGGTCTTGCAATTTATGATACGATGCAGTACATTCGGTCACCAATCAGTACCATTTGTTTGGGGCAAGCTGCATCAATGGCTTCTCTTCTCTTAGCTGCGGGCGCCAAGGGTGAGCGGCGGTCTCTCCCAAATGCTACAGTTATGATTCATCAGCCTTCAGGCGGGTACAGCGGACAGGCCAAAGATATGACAATTCACACGAAGCAGATTGTTCGTATCTGGGATTCCCTTAATGCGTTGTACTCAAAGCATACAGGGCAATCAGTAGATATAATAGAGAAGAATATGGACAGGGATCGATTTTATGACCCCAGAAGAGGCAAGGGCATTCGGAATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008270 GO:0009368 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050897 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

271

Amino Acids

30.18

Weight (kDa)

10.13

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23140
fragaria_vesca	FvH4_4g36920
malus_domestica	MD13G1005300.v1.1 MD16G1002600.v1.1
prunus_persica	Prupe.1G347500_v2.0.a1
pyrus_communis	pycom13g00450 pycom16g00330
rosa_chinensis	RchiOBHm_Chr4g0446681
rosa_laevigata	RLG00000005640
rosa_multiflora	Rmu_sc0001753.1_g000041
rosa_roxburghii	Rroxscaffold_5G00387040
rosa_rugosa	Rorug04G0373600
rosa_samantha	Rh4AG435100 Rh4BG444100 Rh4CG461400 Rh4DG442900
rosa_wichuraiana	Rw4G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	248
Acc36I	ACCTGC	1 cut(s)	461
AccB1I	GGYRCC	2 cut(s)	234, 572
AccBSI	CCGCTC	1 cut(s)	586
AccII	CGCG	3 cut(s)	300, 302, 389
AciI	CCGC	6 cut(s)	319, 569, 586, 589, 633, 642
AclWI	GGATC	3 cut(s)	68, 256, 774
AcuI	CTGAAG	1 cut(s)	612
AcyI	GRCGYC	2 cut(s)	235, 573
AfaI	GTAC	7 cut(s)	123, 305, 440, 500, 520, 638, 713
AfiI	CCNNNNNNNGG	3 cut(s)	291, 632, 788
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	131
AjiI	CACGTC	1 cut(s)	463
AjnI	CCWGG	1 cut(s)	213
AluBI	AGCT	6 cut(s)	211, 252, 258, 394, 539, 566
AluI	AGCT	6 cut(s)	211, 252, 258, 394, 539, 566
Alw21I	GWGCWC	1 cut(s)	282
Alw26I	GTCTC	1 cut(s)	597
AlwI	GGATC	3 cut(s)	68, 256, 774
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	2 cut(s)	227, 648
ApeKI	GCWGC	5 cut(s)	222, 249, 391, 539, 566
AspLEI	GCGC	5 cut(s)	237, 249, 302, 391, 575
AspS9I	GGNCC	2 cut(s)	9, 353
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	501, 593
AvaI	CYCGRG	1 cut(s)	288
AvaII	GGWCC	2 cut(s)	9, 353
BanI	GGYRCC	2 cut(s)	234, 572
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
Bbv12I	GWGCWC	1 cut(s)	282
BbvI	GCAGC	5 cut(s)	234, 261, 403, 526, 553
BccI	CCATC	4 cut(s)	156, 247, 365, 437
BcgI	CGANNNNNNTGC	4 cut(s)	485, 519, 665, 699
BciT130I	CCWGG	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	597
BfmI	CTRYAG	3 cut(s)	253, 468, 606
BfoI	RGCGCY	2 cut(s)	238, 576
BfuAI	ACCTGC	1 cut(s)	461
BisI	GCNGC	6 cut(s)	223, 250, 392, 540, 567, 587
BlsI	GCNGC	6 cut(s)	224, 251, 393, 541, 568, 588
Bme1390I	CCNGG	2 cut(s)	215, 453
Bme18I	GGWCC	2 cut(s)	9, 353
BmeT110I	CYCGRG	1 cut(s)	288
BmgBI	CACGTC	1 cut(s)	463
BmgT120I	GGNCC	2 cut(s)	9, 353
BmiI	GGNNCC	4 cut(s)	59, 236, 355, 574
BmrFI	CCNGG	2 cut(s)	215, 453
BmsI	GCATC	3 cut(s)	354, 483, 551
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpuMI	CCSGG	1 cut(s)	453
Bsa29I	ATCGAT	1 cut(s)	769
BsaHI	GRCGYC	2 cut(s)	235, 573
BsaI	GGTCTC	1 cut(s)	597
BsaJI	CCNNGG	5 cut(s)	230, 267, 289, 451, 576
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	3 cut(s)	291, 632, 788
Bse1I	ACTGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	215
BseCI	ATCGAT	1 cut(s)	769
BseDI	CCNNGG	5 cut(s)	230, 267, 289, 451, 576
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	3 cut(s)	291, 632, 788
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	2 cut(s)	274, 314
BseXI	GCAGC	5 cut(s)	234, 261, 403, 526, 553
Bsh1236I	CGCG	3 cut(s)	300, 302, 389
BshFI	GGCC	2 cut(s)	229, 650
BshNI	GGYRCC	2 cut(s)	234, 572
BshVI	ATCGAT	1 cut(s)	769
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	453
BsiWI	CGTACG	1 cut(s)	303
BslI	CCNNNNNNNGG	3 cut(s)	291, 632, 788
BsmAI	GTCTC	1 cut(s)	597
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	2 cut(s)	229, 650
Bso31I	GGTCTC	1 cut(s)	597
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	4 cut(s)	73, 261, 336, 766
Bsp19I	CCATGG	2 cut(s)	230, 267
BspACI	CCGC	6 cut(s)	319, 569, 586, 589, 633, 642
BspANI	GGCC	2 cut(s)	229, 650
BspDI	ATCGAT	1 cut(s)	769
BspFNI	CGCG	3 cut(s)	300, 302, 389
BspLI	GGNNCC	4 cut(s)	59, 236, 355, 574
BspMAI	CTGCAG	1 cut(s)	472
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	3 cut(s)	68, 256, 774
BspT107I	GGYRCC	2 cut(s)	234, 572
BspTNI	GGTCTC	1 cut(s)	597
BsrBI	CCGCTC	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	5 cut(s)	230, 267, 289, 451, 576
BssMI	GATC	4 cut(s)	73, 261, 336, 766
BssNI	GRCGYC	2 cut(s)	235, 573
BssT1I	CCWWGG	3 cut(s)	230, 267, 576
Bst2UI	CCWGG	1 cut(s)	215
Bst4CI	ACNGT	3 cut(s)	95, 126, 610
Bst6I	CTCTTC	2 cut(s)	561, 781
BstACI	GRCGYC	2 cut(s)	235, 573
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	220, 227, 537, 571
BstDEI	CTNAG	1 cut(s)	562
BstDSI	CCRYGG	2 cut(s)	230, 267
BstEII	GGTNACC	1 cut(s)	507
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	3 cut(s)	300, 302, 389
BstH2I	RGCGCY	2 cut(s)	238, 576
BstHHI	GCGC	5 cut(s)	237, 249, 302, 391, 575
BstKTI	GATC	4 cut(s)	76, 264, 339, 769
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	4 cut(s)	73, 261, 336, 766
BstMWI	GCNNNNNNNGC	6 cut(s)	255, 476, 548, 572, 639, 727
BstNI	CCWGG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	439
BstPI	GGTNACC	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	213, 451
BstSFI	CTRYAG	3 cut(s)	253, 468, 606
BstUI	CGCG	3 cut(s)	300, 302, 389
BstV1I	GCAGC	5 cut(s)	234, 261, 403, 526, 553
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	529
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	769
BsuRI	GGCC	2 cut(s)	229, 650
BsuTUI	ATCGAT	1 cut(s)	769
BtgI	CCRYGG	2 cut(s)	230, 267
BtrI	CACGTC	1 cut(s)	463
BtsCI	GGATG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	3 cut(s)	19, 100, 465
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	4 cut(s)	220, 227, 537, 571
CfoI	GCGC	5 cut(s)	237, 249, 302, 391, 575
Cfr13I	GGNCC	2 cut(s)	9, 353
ClaI	ATCGAT	1 cut(s)	769
Csp6I	GTAC	7 cut(s)	122, 304, 439, 499, 519, 637, 712
CviAII	CATG	3 cut(s)	231, 268, 436
CviQI	GTAC	7 cut(s)	122, 304, 439, 499, 519, 637, 712
DdeI	CTNAG	1 cut(s)	562
DinI	GGCGCC	2 cut(s)	236, 574
DpnI	GATC	4 cut(s)	75, 263, 338, 768
DpnII	GATC	4 cut(s)	73, 261, 336, 766
Eam1104I	CTCTTC	2 cut(s)	561, 781
EarI	CTCTTC	2 cut(s)	561, 781
Eco130I	CCWWGG	3 cut(s)	230, 267, 576
Eco31I	GGTCTC	1 cut(s)	597
Eco47I	GGWCC	2 cut(s)	9, 353
Eco57I	CTGAAG	1 cut(s)	612
Eco88I	CYCGRG	1 cut(s)	288
Eco91I	GGTNACC	1 cut(s)	507
EcoO65I	GGTNACC	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	213
EcoT14I	CCWWGG	3 cut(s)	230, 267, 576
EgeI	GGCGCC	2 cut(s)	236, 574
EheI	GGCGCC	2 cut(s)	236, 574
ErhI	CCWWGG	3 cut(s)	230, 267, 576
FaeI	CATG	3 cut(s)	234, 271, 439
FatI	CATG	3 cut(s)	230, 267, 435
FauI	CCCGC	3 cut(s)	326, 562, 626
Fnu4HI	GCNGC	6 cut(s)	223, 250, 392, 540, 567, 587
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	6 cut(s)	223, 250, 392, 540, 567, 587
FspI	TGCGCA	1 cut(s)	248
GlaI	GCGC	5 cut(s)	236, 248, 301, 390, 574
GluI	GCNGC	6 cut(s)	223, 250, 392, 540, 567, 587
HaeII	RGCGCY	2 cut(s)	238, 576
HaeIII	GGCC	2 cut(s)	229, 650
HapII	CCGG	1 cut(s)	453
HhaI	GCGC	5 cut(s)	237, 249, 302, 391, 575
Hin1I	GRCGYC	2 cut(s)	235, 573
Hin1II	CATG	3 cut(s)	234, 271, 439
Hin6I	GCGC	5 cut(s)	235, 247, 300, 389, 573
HinP1I	GCGC	5 cut(s)	235, 247, 300, 389, 573
HinfI	GANTC	5 cut(s)	159, 407, 616, 695, 805
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	2 cut(s)	501, 593
Hpy188I	TCNGA	2 cut(s)	412, 804
Hpy188III	TCNNGA	1 cut(s)	288
Hpy99I	CGWCG	4 cut(s)	365, 368, 389, 424
HpyAV	CCTTC	1 cut(s)	636
HpyCH4III	ACNGT	3 cut(s)	95, 126, 610
HpyCH4IV	ACGT	2 cut(s)	378, 462
HpyCH4V	TGCA	5 cut(s)	345, 470, 479, 496, 542
HpyF10VI	GCNNNNNNNGC	6 cut(s)	255, 476, 548, 572, 639, 727
HpyF3I	CTNAG	1 cut(s)	562
HpySE526I	ACGT	2 cut(s)	378, 462
Hsp92I	GRCGYC	2 cut(s)	235, 573
Hsp92II	CATG	3 cut(s)	234, 271, 439
HspAI	GCGC	5 cut(s)	235, 247, 300, 389, 573
KasI	GGCGCC	2 cut(s)	234, 572
Kzo9I	GATC	4 cut(s)	73, 261, 336, 766
LmnI	GCTCC	1 cut(s)	216
Lsp1109I	GCAGC	5 cut(s)	234, 261, 403, 526, 553
LweI	GCATC	3 cut(s)	354, 483, 551
MaeII	ACGT	2 cut(s)	378, 462
MaeIII	GTNAC	3 cut(s)	458, 463, 507
MalI	GATC	4 cut(s)	75, 263, 338, 768
MbiI	CCGCTC	1 cut(s)	586
MboI	GATC	4 cut(s)	73, 261, 336, 766
MboII	GAAGA	4 cut(s)	304, 548, 763, 798
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	3 cut(s)	445, 480, 663
Mly113I	GGCGCC	2 cut(s)	235, 573
MseI	TTAA	4 cut(s)	21, 41, 194, 702
MslI	CAYNNNNRTG	1 cut(s)	434
MspA1I	CMGCKG	1 cut(s)	642
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	2 cut(s)	215, 453
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	215
MvnI	CGCG	3 cut(s)	300, 302, 389
MwoI	GCNNNNNNNGC	6 cut(s)	255, 476, 548, 572, 639, 727
NarI	GGCGCC	2 cut(s)	235, 573
NciI	CCSGG	1 cut(s)	453
NcoI	CCATGG	2 cut(s)	230, 267
NdeII	GATC	4 cut(s)	73, 261, 336, 766
NlaIII	CATG	3 cut(s)	234, 271, 439
NlaIV	GGNNCC	4 cut(s)	59, 236, 355, 574
NmuCI	GTSAC	3 cut(s)	458, 463, 507
NsbI	TGCGCA	1 cut(s)	248
NspI	RCATGY	1 cut(s)	439
PciI	ACATGT	1 cut(s)	435
PcsI	WCGNNNNNNNCGW	2 cut(s)	107, 357
PctI	GAATGC	1 cut(s)	798
PfeI	GAWTC	5 cut(s)	159, 407, 616, 695, 805
Pfl23II	CGTACG	1 cut(s)	303
PkrI	GCNGC	6 cut(s)	224, 251, 393, 541, 568, 588
PluTI	GGCGCC	2 cut(s)	238, 576
PscI	ACATGT	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	213
PspEI	GGTNACC	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	213
PspLI	CGTACG	1 cut(s)	303
PspN4I	GGNNCC	4 cut(s)	59, 236, 355, 574
PspPI	GGNCC	2 cut(s)	9, 353
PstI	CTGCAG	1 cut(s)	472
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	7 cut(s)	123, 305, 440, 500, 520, 638, 713
RsaNI	GTAC	7 cut(s)	122, 304, 439, 499, 519, 637, 712
RseI	CAYNNNNRTG	1 cut(s)	434
SaqAI	TTAA	4 cut(s)	21, 41, 194, 702
SatI	GCNGC	6 cut(s)	223, 250, 392, 540, 567, 587
Sau3AI	GATC	4 cut(s)	73, 261, 336, 766
Sau96I	GGNCC	2 cut(s)	9, 353
ScrFI	CCNGG	2 cut(s)	215, 453
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	3 cut(s)	354, 483, 551
SfcI	CTRYAG	3 cut(s)	253, 468, 606
SfoI	GGCGCC	2 cut(s)	236, 574
SinI	GGWCC	2 cut(s)	9, 353
SmiMI	CAYNNNNRTG	1 cut(s)	434
Sse9I	AATT	3 cut(s)	445, 480, 663
SsiI	CCGC	6 cut(s)	319, 569, 586, 589, 633, 642
SspDI	GGCGCC	2 cut(s)	234, 572
StyD4I	CCNGG	2 cut(s)	213, 451
StyI	CCWWGG	3 cut(s)	230, 267, 576
TaaI	ACNGT	3 cut(s)	95, 126, 610
TaiI	ACGT	2 cut(s)	381, 465
TaqI	TCGA	6 cut(s)	101, 110, 118, 360, 422, 769
TaqII	GACCGA	1 cut(s)	495
TasI	AATT	3 cut(s)	445, 480, 663
TatI	WGTACW	2 cut(s)	498, 711
TauI	GCSGC	1 cut(s)	589
TfiI	GAWTC	5 cut(s)	159, 407, 616, 695, 805
Tru1I	TTAA	4 cut(s)	21, 41, 194, 702
Tru9I	TTAA	4 cut(s)	21, 41, 194, 702
TscAI	CASTG	3 cut(s)	19, 100, 472
TseFI	GTSAC	3 cut(s)	458, 463, 507
TseI	GCWGC	5 cut(s)	222, 249, 391, 539, 566
Tsp45I	GTSAC	3 cut(s)	458, 463, 507
TspDTI	ATGAA	1 cut(s)	608
TspGWI	ACGGA	1 cut(s)	366
TspRI	CASTG	3 cut(s)	19, 100, 472
VpaK11BI	GGWCC	2 cut(s)	9, 353
XceI	RCATGY	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.