Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0014077

Physical Location & Seq

Genomic Coordinates Reverse (-)

32483664 .. 32486902

Gene Structure 3239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G347500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATGAGGGGCCTAATCTCAAGCGCGAAGTTTGTGGCAAGTAGCAGGGCATGGGTTAAGCCATGGGGTACGTCTTTGCGCAGCTACAGCTTGATCCCAATGGTTATAGAGCACTCGTCTCGAGGGGAGCGAGCATACGACATCTTCTCTCGCCTTCTCAAGGAGCGCATCGTCTGCATCAACGGTCCAATTAACGACGACACTGCCCACGTCGTCGTTGCGCAGCTTCTCTTTTTGGAGTCTGAGAACCCATCCAAGCCCATTAATATGTACCTCAACTCTCCCGGTGGCCATGTCACTGCAGGTCTTGCAATTTATGATACCATGCAGTACATTCGGTCACCTATCAATACCATTTGTTTGGGTCAAGCTGCATCAATGGCTTCCCTTCTCTTAGCTGCGGGTGCCAAGGGTGAGAGGCGGTCACTCCCAAATGCGACAGTTATGATTCATCAGCCTTCAGGTGGGTACAGTGGACAAGCAAAAGACATGACAATTCACACGAAGCAGATTGTTCGCGTGTGGGATTCCCTTAATGCCTTGTATTCAAAGCATACAGGGCAATCCGTAGAGATAATTCAGAAGAATATGGATAGAGATTATTTTATGACCCCGGAAGAGGCAAAGGAGTTTGGAATAATTGACGAGGTCATGGATGAAAGACCAGTGGCTCTGGTGACTGATGCTGTTGGCAATGAAGGCAAAGAAAAGGATAAAAGTTCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008270 GO:0009368 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050897 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

243

Amino Acids

26.7

Weight (kDa)

7.78

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23140
fragaria_vesca	FvH4_4g36920
malus_domestica	MD13G1005300.v1.1 MD16G1002600.v1.1
prunus_persica	Prupe.1G347500_v2.0.a1
pyrus_communis	pycom13g00450 pycom16g00330
rosa_chinensis	RchiOBHm_Chr4g0446681
rosa_laevigata	RLG00000005640
rosa_multiflora	Rmu_sc0001753.1_g000041
rosa_roxburghii	Rroxscaffold_5G00387040
rosa_rugosa	Rorug04G0373600
rosa_samantha	Rh4AG435100 Rh4BG444100 Rh4CG461400 Rh4DG442900
rosa_wichuraiana	Rw4G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	80, 222
Acc36I	ACCTGC	1 cut(s)	293
AccB1I	GGYRCC	1 cut(s)	404
AccII	CGCG	2 cut(s)	26, 519
AciI	CCGC	2 cut(s)	401, 421
AclWI	GGATC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	4 cut(s)	70, 272, 332, 470
AfiI	CCNNNNNNNGG	3 cut(s)	160, 464, 619
AgsI	TTSAA	2 cut(s)	549, 723
AjiI	CACGTC	1 cut(s)	211
AluBI	AGCT	5 cut(s)	84, 90, 226, 371, 398
AluI	AGCT	5 cut(s)	84, 90, 226, 371, 398
Alw21I	GWGCWC	1 cut(s)	114
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	88
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	2 cut(s)	10, 289
ApeKI	GCWGC	4 cut(s)	81, 223, 371, 398
AseI	ATTAAT	1 cut(s)	264
AspLEI	GCGC	4 cut(s)	26, 81, 168, 223
AspS9I	GGNCC	2 cut(s)	10, 185
AsuC2I	CCSGG	2 cut(s)	285, 614
AsuHPI	GGTGA	3 cut(s)	333, 425, 688
AvaI	CYCGRG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	114
BbvI	GCAGC	4 cut(s)	93, 235, 358, 385
BccI	CCATC	1 cut(s)	259
BcgI	CGANNNNNNTGC	8 cut(s)	101, 135, 185, 219, 317, 351, 497, 531
BcnI	CCSGG	2 cut(s)	285, 614
BcoDI	GTCTC	1 cut(s)	123
BfmI	CTRYAG	2 cut(s)	85, 300
BfuAI	ACCTGC	1 cut(s)	293
BisI	GCNGC	4 cut(s)	82, 224, 372, 399
BlsI	GCNGC	4 cut(s)	83, 225, 373, 400
Bme1390I	CCNGG	2 cut(s)	285, 614
Bme18I	GGWCC	1 cut(s)	185
BmeT110I	CYCGRG	1 cut(s)	120
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	10, 185
BmiI	GGNNCC	2 cut(s)	11, 406
BmrFI	CCNGG	2 cut(s)	285, 614
BmsI	GCATC	4 cut(s)	177, 186, 383, 673
BpuEI	CTTGAG	2 cut(s)	4, 143
BpuMI	CCSGG	2 cut(s)	285, 614
BsaJI	CCNNGG	3 cut(s)	62, 408, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 464, 619
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	1 cut(s)	700
BseDI	CCNNGG	3 cut(s)	62, 408, 612
BseGI	GGATG	2 cut(s)	251, 661
BseLI	CCNNNNNNNGG	3 cut(s)	160, 464, 619
BseMI	GCAATG	1 cut(s)	700
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	665
BseXI	GCAGC	4 cut(s)	93, 235, 358, 385
Bsh1236I	CGCG	2 cut(s)	26, 519
BshFI	GGCC	2 cut(s)	12, 291
BshNI	GGYRCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	120
BsiSI	CCGG	2 cut(s)	285, 614
BslI	CCNNNNNNNGG	3 cut(s)	160, 464, 619
BsmAI	GTCTC	1 cut(s)	123
BsmBI	CGTCTC	1 cut(s)	123
BsnI	GGCC	2 cut(s)	12, 291
BsoBI	CYCGRG	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	93
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	2 cut(s)	401, 421
BspANI	GGCC	2 cut(s)	12, 291
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	2 cut(s)	26, 519
BspLI	GGNNCC	2 cut(s)	11, 406
BspMAI	CTGCAG	1 cut(s)	304
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	700
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	3 cut(s)	62, 408, 612
BssMI	GATC	1 cut(s)	93
BssT1I	CCWWGG	2 cut(s)	62, 408
Bst4CI	ACNGT	3 cut(s)	185, 442, 473
Bst6I	CTCTTC	1 cut(s)	612
BstAPI	GCANNNNNTGC	2 cut(s)	174, 308
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	243, 394
BstDSI	CCRYGG	1 cut(s)	62
BstEII	GGTNACC	1 cut(s)	339
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstF5I	GGATG	2 cut(s)	251, 661
BstFNI	CGCG	2 cut(s)	26, 519
BstHHI	GCGC	4 cut(s)	26, 81, 168, 223
BstKTI	GATC	1 cut(s)	96
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	93
BstMWI	GCNNNNNNNGC	7 cut(s)	87, 174, 308, 380, 404, 559, 699
BstPI	GGTNACC	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	283, 612
BstSFI	CTRYAG	2 cut(s)	85, 300
BstUI	CGCG	2 cut(s)	26, 519
BstV1I	GCAGC	4 cut(s)	93, 235, 358, 385
BstXI	CCANNNNNNTGG	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	12, 291
BtgI	CCRYGG	1 cut(s)	62
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	251, 661
BtsI	GCAGTG	2 cut(s)	201, 297
BtsIMutI	CAGTG	4 cut(s)	201, 297, 478, 672
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	4 cut(s)	26, 81, 168, 223
Cfr13I	GGNCC	2 cut(s)	10, 185
Csp6I	GTAC	4 cut(s)	69, 271, 331, 469
CviAII	CATG	6 cut(s)	51, 63, 293, 325, 490, 652
CviQI	GTAC	4 cut(s)	69, 271, 331, 469
DdeI	CTNAG	2 cut(s)	243, 394
DpnI	GATC	1 cut(s)	95
DpnII	GATC	1 cut(s)	93
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Eco130I	CCWWGG	2 cut(s)	62, 408
Eco47I	GGWCC	1 cut(s)	185
Eco57I	CTGAAG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	339
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	10
EcoO65I	GGTNACC	1 cut(s)	339
EcoT14I	CCWWGG	2 cut(s)	62, 408
ErhI	CCWWGG	2 cut(s)	62, 408
Esp3I	CGTCTC	1 cut(s)	123
FaeI	CATG	6 cut(s)	54, 66, 296, 328, 493, 655
FatI	CATG	6 cut(s)	50, 62, 292, 324, 489, 651
FauI	CCCGC	1 cut(s)	394
Fnu4HI	GCNGC	4 cut(s)	82, 224, 372, 399
FokI	GGATG	2 cut(s)	238, 668
Fsp4HI	GCNGC	4 cut(s)	82, 224, 372, 399
FspI	TGCGCA	2 cut(s)	80, 222
GlaI	GCGC	4 cut(s)	25, 80, 167, 222
GluI	GCNGC	4 cut(s)	82, 224, 372, 399
HaeIII	GGCC	2 cut(s)	12, 291
HapII	CCGG	2 cut(s)	285, 614
HhaI	GCGC	4 cut(s)	26, 81, 168, 223
Hin1II	CATG	6 cut(s)	54, 66, 296, 328, 493, 655
Hin6I	GCGC	4 cut(s)	24, 79, 166, 221
HinP1I	GCGC	4 cut(s)	24, 79, 166, 221
HinfI	GANTC	3 cut(s)	239, 448, 527
HpaII	CCGG	2 cut(s)	285, 614
HphI	GGTGA	3 cut(s)	333, 425, 688
Hpy166II	GTNNAC	1 cut(s)	476
Hpy188I	TCNGA	2 cut(s)	244, 582
Hpy188III	TCNNGA	1 cut(s)	120
Hpy8I	GTNNAC	1 cut(s)	476
Hpy99I	CGWCG	3 cut(s)	200, 215, 218
HpyAV	CCTTC	4 cut(s)	164, 398, 468, 692
HpyCH4III	ACNGT	3 cut(s)	185, 442, 473
HpyCH4IV	ACGT	2 cut(s)	71, 210
HpyCH4V	TGCA	5 cut(s)	177, 302, 311, 328, 374
HpyF10VI	GCNNNNNNNGC	7 cut(s)	87, 174, 308, 380, 404, 559, 699
HpyF3I	CTNAG	2 cut(s)	243, 394
HpySE526I	ACGT	2 cut(s)	71, 210
Hsp92II	CATG	6 cut(s)	54, 66, 296, 328, 493, 655
HspAI	GCGC	4 cut(s)	24, 79, 166, 221
Kzo9I	GATC	1 cut(s)	93
LmnI	GCTCC	2 cut(s)	127, 163
LpnPI	CCDG	8 cut(s)	31, 288, 298, 447, 543, 627, 659, 678
Lsp1109I	GCAGC	4 cut(s)	93, 235, 358, 385
LweI	GCATC	4 cut(s)	177, 186, 383, 673
MaeII	ACGT	2 cut(s)	71, 210
MaeIII	GTNAC	4 cut(s)	295, 339, 423, 676
MalI	GATC	1 cut(s)	95
MboI	GATC	1 cut(s)	93
MboII	GAAGA	3 cut(s)	136, 595, 629
MhlI	GDGCHC	1 cut(s)	114
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	5 cut(s)	189, 312, 495, 576, 639
MluNI	TGGCCA	1 cut(s)	291
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	5 cut(s)	116, 284, 411, 613, 640
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MseI	TTAA	4 cut(s)	57, 192, 264, 534
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	2 cut(s)	285, 614
MspR9I	CCNGG	2 cut(s)	285, 614
MvnI	CGCG	2 cut(s)	26, 519
MwoI	GCNNNNNNNGC	7 cut(s)	87, 174, 308, 380, 404, 559, 699
NciI	CCSGG	2 cut(s)	285, 614
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	93
NlaIII	CATG	6 cut(s)	54, 66, 296, 328, 493, 655
NlaIV	GGNNCC	2 cut(s)	11, 406
NmuCI	GTSAC	4 cut(s)	295, 339, 423, 676
NsbI	TGCGCA	2 cut(s)	80, 222
PaeR7I	CTCGAG	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	127
PfeI	GAWTC	2 cut(s)	448, 527
PflFI	GACNNNGTC	1 cut(s)	647
PkrI	GCNGC	4 cut(s)	83, 225, 373, 400
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	11, 406
PspPI	GGNCC	2 cut(s)	10, 185
PstI	CTGCAG	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	647
RsaI	GTAC	4 cut(s)	70, 272, 332, 470
RsaNI	GTAC	4 cut(s)	69, 271, 331, 469
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	4 cut(s)	57, 192, 264, 534
SatI	GCNGC	4 cut(s)	82, 224, 372, 399
Sau3AI	GATC	1 cut(s)	93
Sau96I	GGNCC	2 cut(s)	10, 185
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	2 cut(s)	285, 614
SduI	GDGCHC	1 cut(s)	114
SfaNI	GCATC	4 cut(s)	177, 186, 383, 673
SfcI	CTRYAG	2 cut(s)	85, 300
Sfr274I	CTCGAG	1 cut(s)	120
SinI	GGWCC	1 cut(s)	185
SlaI	CTCGAG	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	3 cut(s)	19, 120, 158
SmoI	CTYRAG	3 cut(s)	19, 120, 158
Sse9I	AATT	5 cut(s)	189, 312, 495, 576, 639
SsiI	CCGC	2 cut(s)	401, 421
StyD4I	CCNGG	2 cut(s)	283, 612
StyI	CCWWGG	2 cut(s)	62, 408
TaaI	ACNGT	3 cut(s)	185, 442, 473
TaiI	ACGT	2 cut(s)	74, 213
TaqI	TCGA	1 cut(s)	121
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	5 cut(s)	189, 312, 495, 576, 639
TatI	WGTACW	1 cut(s)	330
TfiI	GAWTC	2 cut(s)	448, 527
Tru1I	TTAA	4 cut(s)	57, 192, 264, 534
Tru9I	TTAA	4 cut(s)	57, 192, 264, 534
TscAI	CASTG	4 cut(s)	208, 304, 478, 672
TseFI	GTSAC	4 cut(s)	295, 339, 423, 676
TseI	GCWGC	4 cut(s)	81, 223, 371, 398
Tsp45I	GTSAC	4 cut(s)	295, 339, 423, 676
TspDTI	ATGAA	3 cut(s)	440, 672, 711
TspGWI	ACGGA	1 cut(s)	556
TspRI	CASTG	4 cut(s)	208, 304, 478, 672
Tth111I	GACNNNGTC	1 cut(s)	647
VpaK11BI	GGWCC	1 cut(s)	185
VspI	ATTAAT	1 cut(s)	264
XagI	CCTNNNNNAGG	1 cut(s)	158
XhoI	CTCGAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.