Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0014077

Physical Location & Seq

Genomic Coordinates Reverse (-)

165078 .. 167762

Gene Structure 2685 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1002600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGAGAGGCTTAATCTCAAACGCGAAGCTCCTGGCAAGCAGCAGGCCATGGGCCCCATCTCTGCGCAGCTACAGCTTGATTCCGATGGTCATTGAGCACTCCTCCAGAGGGGAACGCGCGTACGACATCTTCTCCCGCCTCCTCAAGGAGCGGATCATCTGCATCAACGGCCCCATCAACGACGACACCTCCCACGTCGTCGTCGCGCAGCTTCTCTTCTTGGAATCCGAGAACCCGTCCAAGCCCATCCACATGTACCTCAATTCCCCCGGTGGTCACGTCACTGCAGGTCTTGCAATTTATGATACGATGCAGTACATTCGGTCACCAATCAGTACCATTTGTTTGGGCCAAGCTGCATCAATGGCTTCTCTTCTCTTAGCTGCGGGCGCCAAGGGTGAGAGGCGGTCTCTCCCAAATGCTTCAGTTATGATTCATCAGCCTTCAGGCGGGTACAGCGGACAAGCAAAAGATATGACAATTCACACGAAGCAGATGGTTCGTGTCTGGGATTCCCTTAATGCGTTGTACTCGAAGCATACGGGGCAACCAGTAGATGTAGTTGAGAAGAATATGGACAGGGATAATTTTATGACCCCAGAAGAGGCAAAGGCATTCGGAATCATTGATGAGGTGATTGGTGAAAGACCAATGGCTCTGGTGACTGATGCTGTTGCCAATGAAGGCAAAGAAAAGGATAAAAGTTCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008270 GO:0009368 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0016020 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0050897 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

238

Amino Acids

25.97

Weight (kDa)

7.8

Isoelectric Point (pI)

37.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	36 - 215	1.4e-80	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23140
fragaria_vesca	FvH4_4g36920
malus_domestica	MD13G1005300.v1.1 MD16G1002600.v1.1
prunus_persica	Prupe.1G347500_v2.0.a1
pyrus_communis	pycom13g00450 pycom16g00330
rosa_chinensis	RchiOBHm_Chr4g0446681
rosa_laevigata	RLG00000005640
rosa_multiflora	Rmu_sc0001753.1_g000041
rosa_roxburghii	Rroxscaffold_5G00387040
rosa_rugosa	Rorug04G0373600
rosa_samantha	Rh4AG435100 Rh4BG444100 Rh4CG461400 Rh4DG442900
rosa_wichuraiana	Rw4G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	65
Acc36I	ACCTGC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	389
AccBSI	CCGCTC	1 cut(s)	151
AccII	CGCG	4 cut(s)	23, 117, 119, 206
AciI	CCGC	6 cut(s)	136, 151, 386, 406, 450, 459
AclWI	GGATC	1 cut(s)	161
AcuI	CTGAAG	2 cut(s)	408, 429
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	6 cut(s)	122, 257, 317, 337, 455, 530
AfiI	CCNNNNNNNGG	4 cut(s)	108, 145, 449, 604
AflIII	ACRYGT	1 cut(s)	252
AgsI	TTSAA	1 cut(s)	708
AjiI	CACGTC	2 cut(s)	196, 280
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	6 cut(s)	28, 69, 75, 211, 356, 383
AluI	AGCT	6 cut(s)	28, 69, 75, 211, 356, 383
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	414
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	4 cut(s)	44, 51, 169, 349
ApaI	GGGCCC	1 cut(s)	55
ApeKI	GCWGC	5 cut(s)	39, 66, 208, 356, 383
AspLEI	GCGC	4 cut(s)	66, 119, 208, 392
AspS9I	GGNCC	4 cut(s)	51, 52, 170, 349
AsuC2I	CCSGG	1 cut(s)	270
AsuHPI	GGTGA	5 cut(s)	318, 410, 646, 653, 673
BaeGI	GKGCMC	1 cut(s)	55
BanI	GGYRCC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	5 cut(s)	51, 78, 220, 343, 370
BccI	CCATC	5 cut(s)	64, 79, 182, 254, 490
BceAI	ACGGC	1 cut(s)	184
BcgI	CGANNNNNNTGC	4 cut(s)	302, 336, 482, 516
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	1 cut(s)	270
BcoDI	GTCTC	1 cut(s)	414
BfmI	CTRYAG	2 cut(s)	70, 285
BfoI	RGCGCY	1 cut(s)	393
BfuAI	ACCTGC	1 cut(s)	278
BisI	GCNGC	5 cut(s)	40, 67, 209, 357, 384
BlsI	GCNGC	5 cut(s)	41, 68, 210, 358, 385
Bme1390I	CCNGG	2 cut(s)	32, 270
BmgBI	CACGTC	2 cut(s)	196, 280
BmgT120I	GGNCC	4 cut(s)	51, 52, 170, 349
BmiI	GGNNCC	4 cut(s)	53, 54, 172, 391
BmrFI	CCNGG	2 cut(s)	32, 270
BmsI	GCATC	4 cut(s)	171, 300, 368, 658
BplI	GAGNNNNNCTC	4 cut(s)	86, 118, 394, 426
BpmI	CTGGAG	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	270
BsaHI	GRCGYC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	3 cut(s)	47, 268, 393
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 146, 173, 203
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 145, 449, 604
Bse1I	ACTGG	1 cut(s)	551
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	47, 268, 393
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	4 cut(s)	108, 145, 449, 604
BseNI	ACTGG	1 cut(s)	551
BseRI	GAGGAG	2 cut(s)	91, 131
BseSI	GKGCMC	1 cut(s)	55
BseXI	GCAGC	5 cut(s)	51, 78, 220, 343, 370
Bsh1236I	CGCG	4 cut(s)	23, 117, 119, 206
BshFI	GGCC	4 cut(s)	46, 53, 171, 351
BshNI	GGYRCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	270
BsiWI	CGTACG	1 cut(s)	120
BslI	CCNNNNNNNGG	4 cut(s)	108, 145, 449, 604
BsmAI	GTCTC	1 cut(s)	414
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	4 cut(s)	46, 53, 171, 351
Bso31I	GGTCTC	1 cut(s)	414
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	2 cut(s)	55, 99
Bsp143I	GATC	1 cut(s)	153
Bsp19I	CCATGG	1 cut(s)	47
BspACI	CCGC	6 cut(s)	136, 151, 386, 406, 450, 459
BspANI	GGCC	4 cut(s)	46, 53, 171, 351
BspFNI	CGCG	4 cut(s)	23, 117, 119, 206
BspLI	GGNNCC	4 cut(s)	53, 54, 172, 391
BspMAI	CTGCAG	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	389
BspTNI	GGTCTC	1 cut(s)	414
BsrBI	CCGCTC	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	551
BssECI	CCNNGG	3 cut(s)	47, 268, 393
BssMI	GATC	1 cut(s)	153
BssNI	GRCGYC	1 cut(s)	390
BssT1I	CCWWGG	2 cut(s)	47, 393
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	3 cut(s)	221, 378, 597
BstACI	GRCGYC	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	3 cut(s)	37, 44, 388
BstDEI	CTNAG	1 cut(s)	379
BstDSI	CCRYGG	1 cut(s)	47
BstEII	GGTNACC	1 cut(s)	324
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	4 cut(s)	23, 117, 119, 206
BstH2I	RGCGCY	1 cut(s)	393
BstHHI	GCGC	4 cut(s)	66, 119, 208, 392
BstKTI	GATC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	414
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 168, 293, 365, 389, 456, 544
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	256
BstPI	GGTNACC	1 cut(s)	324
BstSCI	CCNGG	2 cut(s)	30, 268
BstSFI	CTRYAG	2 cut(s)	70, 285
BstSLI	GKGCMC	1 cut(s)	55
BstUI	CGCG	4 cut(s)	23, 117, 119, 206
BstV1I	GCAGC	5 cut(s)	51, 78, 220, 343, 370
BstXI	CCANNNNNNTGG	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	46, 53, 171, 351
BtgI	CCRYGG	1 cut(s)	47
BtrI	CACGTC	2 cut(s)	196, 280
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	278
Cac8I	GCNNGC	3 cut(s)	37, 44, 388
CfoI	GCGC	4 cut(s)	66, 119, 208, 392
Cfr13I	GGNCC	4 cut(s)	51, 52, 170, 349
Csp6I	GTAC	6 cut(s)	121, 256, 316, 336, 454, 529
CviAII	CATG	2 cut(s)	48, 253
CviQI	GTAC	6 cut(s)	121, 256, 316, 336, 454, 529
DdeI	CTNAG	1 cut(s)	379
DinI	GGCGCC	1 cut(s)	391
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eam1104I	CTCTTC	3 cut(s)	221, 378, 597
EarI	CTCTTC	3 cut(s)	221, 378, 597
Eco130I	CCWWGG	2 cut(s)	47, 393
Eco24I	GRGCYC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	414
Eco57I	CTGAAG	2 cut(s)	408, 429
Eco91I	GGTNACC	1 cut(s)	324
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	52
EcoO65I	GGTNACC	1 cut(s)	324
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	47, 393
EcoT38I	GRGCYC	1 cut(s)	55
EgeI	GGCGCC	1 cut(s)	391
EheI	GGCGCC	1 cut(s)	391
ErhI	CCWWGG	2 cut(s)	47, 393
FaeI	CATG	2 cut(s)	51, 256
FaiI	YATR	8 cut(s)	49, 254, 303, 431, 476, 540, 575, 593
FatI	CATG	2 cut(s)	47, 252
FauI	CCCGC	3 cut(s)	143, 379, 443
Fnu4HI	GCNGC	5 cut(s)	40, 67, 209, 357, 384
FokI	GGATG	1 cut(s)	233
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	5 cut(s)	40, 67, 209, 357, 384
FspI	TGCGCA	1 cut(s)	65
GlaI	GCGC	4 cut(s)	65, 118, 207, 391
GluI	GCNGC	5 cut(s)	40, 67, 209, 357, 384
GsuI	CTGGAG	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	393
HaeIII	GGCC	4 cut(s)	46, 53, 171, 351
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	4 cut(s)	66, 119, 208, 392
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	51, 256
Hin6I	GCGC	4 cut(s)	64, 117, 206, 390
HinP1I	GCGC	4 cut(s)	64, 117, 206, 390
HinfI	GANTC	5 cut(s)	79, 224, 433, 512, 621
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	5 cut(s)	318, 410, 646, 653, 673
Hpy188I	TCNGA	3 cut(s)	84, 229, 620
Hpy188III	TCNNGA	1 cut(s)	105
Hpy99I	CGWCG	4 cut(s)	185, 200, 203, 206
HpyAV	CCTTC	2 cut(s)	453, 677
HpyCH4IV	ACGT	2 cut(s)	195, 279
HpyCH4V	TGCA	5 cut(s)	162, 287, 296, 313, 359
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 168, 293, 365, 389, 456, 544
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	2 cut(s)	195, 279
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	51, 256
HspAI	GCGC	4 cut(s)	64, 117, 206, 390
KasI	GGCGCC	1 cut(s)	389
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	33, 148
Lsp1109I	GCAGC	5 cut(s)	51, 78, 220, 343, 370
LweI	GCATC	4 cut(s)	171, 300, 368, 658
MaeII	ACGT	2 cut(s)	195, 279
MaeIII	GTNAC	4 cut(s)	275, 280, 324, 661
MalI	GATC	1 cut(s)	155
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	1 cut(s)	153
MboII	GAAGA	5 cut(s)	121, 208, 365, 580, 614
MhlI	GDGCHC	2 cut(s)	55, 99
MluCI	AATT	4 cut(s)	262, 297, 480, 586
Mly113I	GGCGCC	1 cut(s)	390
MnlI	CCTC	9 cut(s)	101, 112, 149, 152, 199, 269, 396, 598, 625
MseI	TTAA	2 cut(s)	11, 519
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	459
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	32, 270
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	4 cut(s)	23, 117, 119, 206
MwoI	GCNNNNNNNGC	7 cut(s)	72, 168, 293, 365, 389, 456, 544
NarI	GGCGCC	1 cut(s)	390
NciI	CCSGG	1 cut(s)	270
NcoI	CCATGG	1 cut(s)	47
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	51, 256
NlaIV	GGNNCC	4 cut(s)	53, 54, 172, 391
NmuCI	GTSAC	4 cut(s)	275, 280, 324, 661
NsbI	TGCGCA	1 cut(s)	65
NspI	RCATGY	1 cut(s)	256
PciI	ACATGT	1 cut(s)	252
PctI	GAATGC	1 cut(s)	614
PfeI	GAWTC	5 cut(s)	79, 224, 433, 512, 621
Pfl23II	CGTACG	1 cut(s)	120
PkrI	GCNGC	5 cut(s)	41, 68, 210, 358, 385
PluTI	GGCGCC	1 cut(s)	393
PscI	ACATGT	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	324
PspGI	CCWGG	1 cut(s)	30
PspLI	CGTACG	1 cut(s)	120
PspN4I	GGNNCC	4 cut(s)	53, 54, 172, 391
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	4 cut(s)	51, 52, 170, 349
PstI	CTGCAG	1 cut(s)	289
RsaI	GTAC	6 cut(s)	122, 257, 317, 337, 455, 530
RsaNI	GTAC	6 cut(s)	121, 256, 316, 336, 454, 529
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	2 cut(s)	11, 519
SatI	GCNGC	5 cut(s)	40, 67, 209, 357, 384
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	4 cut(s)	51, 52, 170, 349
ScrFI	CCNGG	2 cut(s)	32, 270
SduI	GDGCHC	2 cut(s)	55, 99
SfaNI	GCATC	4 cut(s)	171, 300, 368, 658
SfcI	CTRYAG	2 cut(s)	70, 285
SfoI	GGCGCC	1 cut(s)	391
SmiMI	CAYNNNNRTG	1 cut(s)	251
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	4 cut(s)	262, 297, 480, 586
SsiI	CCGC	6 cut(s)	136, 151, 386, 406, 450, 459
SspDI	GGCGCC	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	30, 268
StyI	CCWWGG	2 cut(s)	47, 393
TaiI	ACGT	2 cut(s)	198, 282
TaqI	TCGA	1 cut(s)	533
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	4 cut(s)	262, 297, 480, 586
TatI	WGTACW	2 cut(s)	315, 528
TfiI	GAWTC	5 cut(s)	79, 224, 433, 512, 621
Tru1I	TTAA	2 cut(s)	11, 519
Tru9I	TTAA	2 cut(s)	11, 519
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	4 cut(s)	275, 280, 324, 661
TseI	GCWGC	5 cut(s)	39, 66, 208, 356, 383
Tsp45I	GTSAC	4 cut(s)	275, 280, 324, 661
TspDTI	ATGAA	2 cut(s)	425, 696
TspRI	CASTG	1 cut(s)	289
XagI	CCTNNNNNAGG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.