RchiOBHm_Chr4g0446681

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014077
Physical Location & Seq
Forward (+)
66770015 .. 66772515
2501 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41418

Sequence Viewer

Length: 750 bp
ATGATGAGGAGCCTAATCTCAGGCGCCAAGCTCGTCGCGACCAGCAGAAGAGCACGAGTTTCGAGTCCATGGGGAACGAGCACGACGACGACGTCTTCTCGGTGCTACAGTCTGATCCCAATGGTGATAGAGCACTCGTCTCGAGGTGAGCGAGCGTACGACATCTTCTCTCGCCTTCTCAAGGAGCGCATAGTCTGCATCAACGGTCCCATCAACGACGACACCGCCCATGTCGTCGTCGCCCAGCTTCTCTTTCTCGAGTCTGAGAACCCATCCAAGCCCATCAATATGTACCTCAATTCTCCTGGTGGCCATGTCACTGCAGGTCTTGCAATTTATGATACCATGCAGTACATTCGGTCACCGATCAATACAATTTGTTTGGGTCAAGCTGCATCAATGGCTTCACTTCTCTTAGCTGCGGGTGCCAAGGGTGAGAGGCGGTCACTTCCCAATGCCACAATTATGATTCATCAGCCTTCAGGTGGGTACAGCGGACAAGCAAAAGATATGACAATTCACACAAAGCAGATTGTCCGTGTGTGGGATTCACTCAATGCGTTGTATTCAAAGCATACAGGGCAGTCAAAAGAGATGATCGAGAAGAATATGGATAGGGATCACTTCATGACCGCAGTAGAGGCAAAGGAGTTTGGAATAATTGATGAAGTCATTGATGAAAGACCAATGGCTCTGGTCACTGATGCTGTTGGCAAAGAAGGCAAAGAACAGGACAAGAGTTCAAACTAG

Protein Analysis

249

Amino Acids

27.33

Weight (kDa)

8.39

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 48 - 227 6.3e-82 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G23140
fragaria_vesca FvH4_4g36920
malus_domestica MD13G1005300.v1.1 MD16G1002600.v1.1
prunus_persica Prupe.1G347500_v2.0.a1
pyrus_communis pycom13g00450 pycom16g00330
rosa_chinensis RchiOBHm_Chr4g0446681
rosa_laevigata RLG00000005640
rosa_multiflora Rmu_sc0001753.1_g000041
rosa_roxburghii Rroxscaffold_5G00387040
rosa_rugosa Rorug04G0373600
rosa_samantha Rh4AG435100 Rh4BG444100 Rh4CG461400 Rh4DG442900
rosa_wichuraiana Rw4G037200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AatII GACGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 314
AccB1I GGYRCC 2 cut(s) 23, 425
AccII CGCG 1 cut(s) 38
AciI CCGC 5 cut(s) 225, 422, 442, 495, 633
AclWI GGATC 2 cut(s) 109, 627
AcoI YGGCCR 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 465
AcyI GRCGYC 2 cut(s) 24, 92
AfaI GTAC 4 cut(s) 158, 293, 353, 491
AfiI CCNNNNNNNGG 3 cut(s) 181, 485, 544
AgsI TTSAA 2 cut(s) 570, 744
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 4 cut(s) 31, 247, 392, 419
AluI AGCT 4 cut(s) 31, 247, 392, 419
Alw21I GWGCWC 3 cut(s) 55, 83, 135
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 2 cut(s) 109, 627
Ama87I CYCGRG 2 cut(s) 141, 257
AoxI GGCC 1 cut(s) 310
ApeKI GCWGC 2 cut(s) 392, 419
AspLEI GCGC 2 cut(s) 26, 189
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 4 cut(s) 136, 158, 354, 446
AvaI CYCGRG 2 cut(s) 141, 257
AvaII GGWCC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 312
BanI GGYRCC 2 cut(s) 23, 425
BarI GAAGNNNNNNTAC 2 cut(s) 149, 181
BauI CACGAG 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 87
Bbv12I GWGCWC 3 cut(s) 55, 83, 135
BbvI GCAGC 2 cut(s) 379, 406
BccI CCATC 3 cut(s) 218, 280, 290
BcgI CGANNNNNNTGC 6 cut(s) 42, 76, 122, 156, 338, 372
BciT130I CCWGG 1 cut(s) 306
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 748
BfmI CTRYAG 2 cut(s) 106, 321
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 2 cut(s) 393, 420
BlsI GCNGC 2 cut(s) 394, 421
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 1 cut(s) 206
BmeT110I CYCGRG 2 cut(s) 141, 257
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 4 cut(s) 11, 25, 208, 427
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 3 cut(s) 207, 404, 694
BpiI GAAGAC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 618
BsaHI GRCGYC 2 cut(s) 24, 92
BsaJI CCNNGG 2 cut(s) 68, 429
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 485, 544
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 68, 429
BseGI GGATG 1 cut(s) 272
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 3 cut(s) 181, 485, 544
BseMII CTCAG 2 cut(s) 33, 255
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 2 cut(s) 379, 406
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 312
BshNI GGYRCC 2 cut(s) 23, 425
BsiHKAI GWGCWC 3 cut(s) 55, 83, 135
BsiHKCI CYCGRG 2 cut(s) 141, 257
BsiWI CGTACG 1 cut(s) 156
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 3 cut(s) 181, 485, 544
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 1 cut(s) 312
BsoBI CYCGRG 2 cut(s) 141, 257
Bsp1286I GDGCHC 3 cut(s) 55, 83, 135
Bsp143I GATC 4 cut(s) 114, 366, 597, 619
Bsp19I CCATGG 1 cut(s) 68
Bsp68I TCGCGA 1 cut(s) 38
BspACI CCGC 5 cut(s) 225, 422, 442, 495, 633
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 2 cut(s) 32, 256
BspFNI CGCG 1 cut(s) 38
BspHI TCATGA 1 cut(s) 627
BspLI GGNNCC 4 cut(s) 11, 25, 208, 427
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 2 cut(s) 109, 627
BspQI GCTCTTC 1 cut(s) 43
BspT107I GGYRCC 2 cut(s) 23, 425
BssECI CCNNGG 2 cut(s) 68, 429
BssMI GATC 4 cut(s) 114, 366, 597, 619
BssNI GRCGYC 2 cut(s) 24, 92
BssSI CACGAG 1 cut(s) 54
BssT1I CCWWGG 2 cut(s) 68, 429
Bst2BI CACGAG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 110, 206
Bst6I CTCTTC 1 cut(s) 43
BstACI GRCGYC 2 cut(s) 24, 92
BstAPI GCANNNNNTGC 2 cut(s) 195, 329
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 3 cut(s) 19, 264, 415
BstDSI CCRYGG 1 cut(s) 68
BstEII GGTNACC 1 cut(s) 360
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 272
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 2 cut(s) 26, 189
BstKTI GATC 4 cut(s) 117, 369, 600, 622
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 4 cut(s) 114, 366, 597, 619
BstMWI GCNNNNNNNGC 7 cut(s) 195, 329, 401, 425, 580, 641, 720
BstNI CCWGG 1 cut(s) 306
BstPI GGTNACC 1 cut(s) 360
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 2 cut(s) 106, 321
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 379, 406
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 68
BtsCI GGATG 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 318
BtsIMutI CAGTG 2 cut(s) 318, 699
BtuMI TCGCGA 1 cut(s) 38
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 153
CciI TCATGA 1 cut(s) 627
CfoI GCGC 2 cut(s) 26, 189
Cfr13I GGNCC 1 cut(s) 206
Csp6I GTAC 4 cut(s) 157, 292, 352, 490
CviAII CATG 5 cut(s) 69, 230, 314, 346, 628
CviQI GTAC 4 cut(s) 157, 292, 352, 490
DdeI CTNAG 3 cut(s) 19, 264, 415
DinI GGCGCC 1 cut(s) 25
DpnI GATC 4 cut(s) 116, 368, 599, 621
DpnII GATC 4 cut(s) 114, 366, 597, 619
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 43
Eco130I CCWWGG 2 cut(s) 68, 429
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 465
Eco88I CYCGRG 2 cut(s) 141, 257
Eco91I GGTNACC 1 cut(s) 360
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoO65I GGTNACC 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 68, 429
EgeI GGCGCC 1 cut(s) 25
EheI GGCGCC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 68, 429
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 5 cut(s) 72, 233, 317, 349, 631
FaqI GGGAC 1 cut(s) 192
FatI CATG 5 cut(s) 68, 229, 313, 345, 627
FauI CCCGC 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 393, 420
FokI GGATG 1 cut(s) 259
Fsp4HI GCNGC 2 cut(s) 393, 420
FspBI CTAG 1 cut(s) 748
GlaI GCGC 2 cut(s) 25, 188
GluI GCNGC 2 cut(s) 393, 420
GsaI CCCAGC 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 1 cut(s) 312
HhaI GCGC 2 cut(s) 26, 189
Hin1I GRCGYC 2 cut(s) 24, 92
Hin1II CATG 5 cut(s) 72, 233, 317, 349, 631
Hin6I GCGC 2 cut(s) 24, 187
HinP1I GCGC 2 cut(s) 24, 187
HinfI GANTC 4 cut(s) 64, 260, 469, 548
HphI GGTGA 4 cut(s) 136, 158, 354, 446
Hpy188I TCNGA 2 cut(s) 114, 265
Hpy188III TCNNGA 5 cut(s) 37, 141, 257, 601, 628
Hpy99I CGWCG 7 cut(s) 38, 88, 91, 94, 221, 239, 242
HpyAV CCTTC 3 cut(s) 185, 489, 713
HpyCH4III ACNGT 2 cut(s) 110, 206
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 5 cut(s) 198, 323, 332, 349, 395
HpyF10VI GCNNNNNNNGC 7 cut(s) 195, 329, 401, 425, 580, 641, 720
HpyF3I CTNAG 3 cut(s) 19, 264, 415
HpySE526I ACGT 1 cut(s) 92
Hsp92I GRCGYC 2 cut(s) 24, 92
Hsp92II CATG 5 cut(s) 72, 233, 317, 349, 631
HspAI GCGC 2 cut(s) 24, 187
KasI GGCGCC 1 cut(s) 23
Kzo9I GATC 4 cut(s) 114, 366, 597, 619
LguI GCTCTTC 1 cut(s) 43
LmnI GCTCC 2 cut(s) 9, 184
Lsp1109I GCAGC 2 cut(s) 379, 406
LweI GCATC 3 cut(s) 207, 404, 694
MaeI CTAG 1 cut(s) 748
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 4 cut(s) 316, 360, 444, 697
MalI GATC 4 cut(s) 116, 368, 599, 621
MboI GATC 4 cut(s) 114, 366, 597, 619
MboII GAAGA 4 cut(s) 60, 87, 157, 616
MhlI GDGCHC 3 cut(s) 55, 83, 135
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 6 cut(s) 298, 333, 375, 462, 516, 660
MluNI TGGCCA 1 cut(s) 312
Mly113I GGCGCC 1 cut(s) 24
MlyI GAGTC 2 cut(s) 73, 269
MnlI CCTC 4 cut(s) 137, 305, 432, 634
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MslI CAYNNNNRTG 2 cut(s) 287, 464
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 495
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 7 cut(s) 195, 329, 401, 425, 580, 641, 720
NarI GGCGCC 1 cut(s) 24
NcoI CCATGG 1 cut(s) 68
NdeII GATC 4 cut(s) 114, 366, 597, 619
NlaIII CATG 5 cut(s) 72, 233, 317, 349, 631
NlaIV GGNNCC 4 cut(s) 11, 25, 208, 427
NmuCI GTSAC 4 cut(s) 316, 360, 444, 697
NruI TCGCGA 1 cut(s) 38
PaeR7I CTCGAG 2 cut(s) 141, 257
PagI TCATGA 1 cut(s) 627
PciSI GCTCTTC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 3 cut(s) 83, 89, 148
PfeI GAWTC 2 cut(s) 469, 548
Pfl23II CGTACG 1 cut(s) 156
PflFI GACNNNGTC 1 cut(s) 91
PkrI GCNGC 2 cut(s) 394, 421
PleI GAGTC 2 cut(s) 72, 268
PluTI GGCGCC 1 cut(s) 27
PpsI GAGTC 2 cut(s) 72, 268
Psp6I CCWGG 1 cut(s) 304
PspEI GGTNACC 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 1 cut(s) 304
PspLI CGTACG 1 cut(s) 156
PspN4I GGNNCC 4 cut(s) 11, 25, 208, 427
PspPI GGNCC 1 cut(s) 206
PstI CTGCAG 1 cut(s) 325
PsyI GACNNNGTC 1 cut(s) 91
RruI TCGCGA 1 cut(s) 38
RsaI GTAC 4 cut(s) 158, 293, 353, 491
RsaNI GTAC 4 cut(s) 157, 292, 352, 490
RseI CAYNNNNRTG 2 cut(s) 287, 464
SapI GCTCTTC 1 cut(s) 43
SatI GCNGC 2 cut(s) 393, 420
Sau3AI GATC 4 cut(s) 114, 366, 597, 619
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 2 cut(s) 73, 269
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 3 cut(s) 55, 83, 135
SetI ASST 9 cut(s) 33, 95, 148, 249, 297, 328, 394, 421, 487
SfaNI GCATC 3 cut(s) 207, 404, 694
SfcI CTRYAG 2 cut(s) 106, 321
SfoI GGCGCC 1 cut(s) 25
Sfr274I CTCGAG 2 cut(s) 141, 257
SinI GGWCC 1 cut(s) 206
SlaI CTCGAG 2 cut(s) 141, 257
SmiMI CAYNNNNRTG 2 cut(s) 287, 464
SmlI CTYRAG 3 cut(s) 141, 179, 257
SmoI CTYRAG 3 cut(s) 141, 179, 257
Sse9I AATT 6 cut(s) 298, 333, 375, 462, 516, 660
SsiI CCGC 5 cut(s) 225, 422, 442, 495, 633
SspDI GGCGCC 1 cut(s) 23
SspMI CTAG 1 cut(s) 748
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 2 cut(s) 68, 429
TaaI ACNGT 2 cut(s) 110, 206
TaiI ACGT 1 cut(s) 95
TaqI TCGA 4 cut(s) 62, 142, 258, 600
TaqII GACCGA 1 cut(s) 348
TasI AATT 6 cut(s) 298, 333, 375, 462, 516, 660
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 2 cut(s) 469, 548
TscAI CASTG 2 cut(s) 325, 706
TseFI GTSAC 4 cut(s) 316, 360, 444, 697
TseI GCWGC 2 cut(s) 392, 419
Tsp45I GTSAC 4 cut(s) 316, 360, 444, 697
TspDTI ATGAA 4 cut(s) 461, 616, 681, 693
TspGWI ACGGA 1 cut(s) 527
TspRI CASTG 2 cut(s) 325, 706
Tth111I GACNNNGTC 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 179
XhoI CTCGAG 2 cut(s) 141, 257
XspI CTAG 1 cut(s) 748
ZraI GACGTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.