AT5G24165

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009036
Physical Location & Seq
Forward (+)
8188166 .. 8189470
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24165.1

Sequence Viewer

Length: 228 bp
ATGAGAAGAATTCCTCGTATCAAATTTCCTCAGAGACATTCTATCTCATCTGGTTCTGGACCGGCGCCGGGATCTGTTTCCGGCGTTAAGAAAAATGTGACGGCGAGTTCTGATGTTCCGGCAGCTCCGAAGAACACTGCTGATGGAGGGAAAGCATCTCTCCAGCCGAAACGTACACCTGTCTCCGACAAAGAAATCGAATCTATTATGTTGGGTGGTTGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.76

Weight (kDa)

10.38

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 64
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 2 cut(s) 9, 23
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 68
AluBI AGCT 1 cut(s) 125
AluI AGCT 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 28, 187
AlwI GGATC 1 cut(s) 79
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 2 cut(s) 9, 23
AspLEI GCGC 1 cut(s) 67
AspS9I GGNCC 1 cut(s) 59
AsuC2I CCSGG 1 cut(s) 69
AvaII GGWCC 1 cut(s) 59
BanI GGYRCC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 134
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 117
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 28, 187
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse118I RCCGGY 1 cut(s) 61
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 64
BsiSI CCGG 4 cut(s) 62, 68, 81, 119
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 28, 187
Bsp143I GATC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 66
BspPI GGATC 1 cut(s) 79
BspT107I GGYRCC 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 61
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 1 cut(s) 71
BssNI GRCGYC 1 cut(s) 65
BstACI GRCGYC 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 30
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 1 cut(s) 74
BstMAI GTCTC 2 cut(s) 28, 187
BstMBI GATC 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 134
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BtsI GCAGTG 1 cut(s) 135
BtsIMutI CAGTG 1 cut(s) 135
CfoI GCGC 1 cut(s) 67
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 1 cut(s) 174
CviJI RGCY 2 cut(s) 125, 166
CviKI_1 RGCY 2 cut(s) 125, 166
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 1 cut(s) 30
DinI GGCGCC 1 cut(s) 66
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 59
EcoRI GAATTC 1 cut(s) 9
EgeI GGCGCC 1 cut(s) 66
EheI GGCGCC 1 cut(s) 66
FaiI YATR 3 cut(s) 209, 224, 226
FauNDI CATATG 1 cut(s) 224
Fnu4HI GCNGC 1 cut(s) 123
Fsp4HI GCNGC 1 cut(s) 123
GlaI GCGC 1 cut(s) 66
GluI GCNGC 1 cut(s) 123
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 68
HapII CCGG 4 cut(s) 62, 68, 81, 119
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 65
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HinfI GANTC 1 cut(s) 200
HpaII CCGG 4 cut(s) 62, 68, 81, 119
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 4 cut(s) 33, 112, 129, 187
Hpy188III TCNNGA 1 cut(s) 57
Hpy8I GTNNAC 1 cut(s) 176
HpyCH4IV ACGT 1 cut(s) 172
HpyCH4V TGCA 1 cut(s) 222
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 65
HspAI GCGC 1 cut(s) 65
KasI GGCGCC 1 cut(s) 64
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 8 cut(s) 36, 42, 75, 81, 94, 132, 176, 192
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 164
MaeII ACGT 1 cut(s) 172
MaeIII GTNAC 1 cut(s) 97
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 2 cut(s) 18, 142
MflI RGATCY 1 cut(s) 71
MluCI AATT 2 cut(s) 9, 23
Mly113I GGCGCC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 3 cut(s) 24, 39, 140
MseI TTAA 1 cut(s) 87
MspI CCGG 4 cut(s) 62, 68, 81, 119
MspR9I CCNGG 1 cut(s) 69
NarI GGCGCC 1 cut(s) 65
NciI CCSGG 1 cut(s) 69
NdeI CATATG 1 cut(s) 224
NdeII GATC 1 cut(s) 71
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 200
PkrI GCNGC 1 cut(s) 124
PluTI GGCGCC 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 87
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 69
SetI ASST 3 cut(s) 127, 175, 181
SfaNI GCATC 1 cut(s) 164
SfoI GGCGCC 1 cut(s) 66
SinI GGWCC 1 cut(s) 59
Sse9I AATT 2 cut(s) 9, 23
SspDI GGCGCC 1 cut(s) 64
StyD4I CCNGG 1 cut(s) 67
TaiI ACGT 1 cut(s) 175
TaqI TCGA 1 cut(s) 198
TasI AATT 2 cut(s) 9, 23
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 87
Tru9I TTAA 1 cut(s) 87
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 122
Tsp45I GTSAC 1 cut(s) 97
TspRI CASTG 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 59
XapI RAATTY 2 cut(s) 9, 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.