Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0009036

Physical Location & Seq

Genomic Coordinates Forward (+)

31171146 .. 31171810

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1219400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTGGATAACCCAAAACATAAAAGGTGAGAGAGAGAGAGAGATGGGAGGAGAAGGGCATTTTTTGAAGAGGATTGTACGCATAAAATTCCCACAAAGGCACCCGAAATCCTCAAAGCCAGGTTCTGCTTCAAAAACTCAACATGAATCGGCGCTTGGGTCAGATGTCCCCGCACGGTCGAAAAACACGGCGGTCGGAGGCAAAGCTTCTCTTCAGCCGGAACGTACACCGGTCACAGCCAACGAAATAGATGCTATACTTTTGGGCGGATGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

93

Amino Acids

9.99

Weight (kDa)

10.0

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009036)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24165 AT5G24165
fragaria_vesca	FvH4_7g31780
malus_domestica	MD01G1219400.v1.1
prunus_persica	Prupe.2G311800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0381011
rosa_laevigata	RLG00000004172
rosa_multiflora	Rmu_sc0004494.1_g000001 Rmu_sc0035423.1_g000002
rosa_roxburghii	Rroxscaffold_4G00278860
rosa_rugosa	Rorug07G0018000
rosa_samantha	Rh1AG450200 Rh1BG406200 Rh1CG420200 Rh1DG436700 Rh2BG452700 Rh2DG462600 Rh3BG307800 Rh7AG145700 Rh7BG145600
rosa_wichuraiana	Rw1G039230 Rw6G037190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	99
AciI	CCGC	3 cut(s)	171, 191, 267
AcsI	RAATTY	1 cut(s)	86
AcuI	CTGAAG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	78, 226
AgeI	ACCGGT	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	67, 132
AjnI	CCWGG	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	125
ApoI	RAATTY	1 cut(s)	86
AsiGI	ACCGGT	1 cut(s)	229
AspLEI	GCGC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	99
BccI	CCATC	1 cut(s)	37
BceAI	ACGGC	1 cut(s)	204
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	120
BfoI	RGCGCY	1 cut(s)	155
Bme1390I	CCNGG	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	1 cut(s)	120
BmsI	GCATC	2 cut(s)	241, 260
BsaWI	WCCGGW	1 cut(s)	229
Bse118I	RCCGGY	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	275
BseRI	GAGGAG	1 cut(s)	63
Bsh1285I	CGRYCG	2 cut(s)	179, 195
BshNI	GGYRCC	1 cut(s)	99
BshTI	ACCGGT	1 cut(s)	229
BsiEI	CGRYCG	2 cut(s)	179, 195
BsiSI	CCGG	2 cut(s)	218, 230
BslFI	GGGAC	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	152
BspACI	CCGC	3 cut(s)	171, 191, 267
BspLI	GGNNCC	1 cut(s)	101
BspT107I	GGYRCC	1 cut(s)	99
BsrFI	RCCGGY	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	229
Bst2UI	CCWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	2 cut(s)	62, 216
BstF5I	GGATG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	155
BstHHI	GCGC	1 cut(s)	154
BstMCI	CGRYCG	2 cut(s)	179, 195
BstNI	CCWGG	1 cut(s)	120
BstSCI	CCNGG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	275
CaiI	CAGNNNCTG	1 cut(s)	125
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	229
Csp6I	GTAC	2 cut(s)	77, 225
CspAI	ACCGGT	1 cut(s)	229
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	4 cut(s)	118, 206, 217, 239
CviKI_1	RGCY	4 cut(s)	118, 206, 217, 239
CviQI	GTAC	2 cut(s)	77, 225
Eam1104I	CTCTTC	2 cut(s)	62, 216
EarI	CTCTTC	2 cut(s)	62, 216
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	1 cut(s)	118
EcoT22I	ATGCAT	1 cut(s)	275
FaeI	CATG	1 cut(s)	146
FaiI	YATR	4 cut(s)	20, 83, 144, 257
FalI	AAGNNNNNCTT	2 cut(s)	195, 227
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	142
FauI	CCCGC	1 cut(s)	178
GlaI	GCGC	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	155
HapII	CCGG	2 cut(s)	218, 230
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	2 cut(s)	218, 230
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	163, 197
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	273
HpySE526I	ACGT	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	1 cut(s)	152
LpnPI	CCDG	4 cut(s)	105, 132, 231, 243
LweI	GCATC	2 cut(s)	241, 260
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	232
MboII	GAAGA	2 cut(s)	79, 203
MluCI	AATT	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	41, 63, 121, 191
Mph1103I	ATGCAT	1 cut(s)	275
MspI	CCGG	2 cut(s)	218, 230
MspR9I	CCNGG	1 cut(s)	120
MvaI	CCWGG	1 cut(s)	120
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	146
PinAI	ACCGGT	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	101
PstNI	CAGNNNCTG	1 cut(s)	125
RsaI	GTAC	2 cut(s)	78, 226
RsaNI	GTAC	2 cut(s)	77, 225
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	4 cut(s)	28, 124, 208, 226
SfaNI	GCATC	2 cut(s)	241, 260
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	3 cut(s)	171, 191, 267
StyD4I	CCNGG	1 cut(s)	118
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	179
TasI	AATT	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	232
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	159
XapI	RAATTY	1 cut(s)	86
Zsp2I	ATGCAT	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.