Rw6G037190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0009036
Physical Location & Seq
Forward (+)
61592025 .. 61594143
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G037190.1

Sequence Viewer

Length: 420 bp
ATGGATATGTTTGTGGGGTTGGCAGTATCAACAACCAGACAGTTTGATAGATTGCTTCTCGCCTATCACAGACTCGGTCTTCTGCCACGTAGCTCCCTCACTGTGCCTAGCAATTGGCTTTGGCCAAGTGGAGAGGTTTATTGGGCTTTTTATGACGGATTAAAGATTCAGATGGGCTATGTTCACCAGCCCAATCATGAAGATAGAATTCCCAGAATCAAATTCCCACAAAGACACCCAAAATCCTCAGCTTCAGGTTCTGCTTCACATACTCAAGATGCATCATCAGCTAGTCTAGGGTCAGATGTTCCAGCGCCACCGAAAAACCCTGGCGTCGGAGGGAAGGCCTCTCTTCAGCCCAAACGCACACCTGTGACAGCCAGAGAAATAGATGCCATAATATCAGGTGGATGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.15

Weight (kDa)

9.66

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 2 cut(s) 207, 221
AcuI CTGAAG 2 cut(s) 237, 338
AcyI GRCGYC 1 cut(s) 333
AfiI CCNNNNNNNGG 1 cut(s) 335
AjnI CCWGG 1 cut(s) 328
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 3 cut(s) 93, 251, 290
AluI AGCT 3 cut(s) 93, 251, 290
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 2 cut(s) 122, 345
ApoI RAATTY 2 cut(s) 207, 221
AspLEI GCGC 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 176
BalI TGGCCA 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 71
BbvCI CCTCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 330
BfaI CTAG 3 cut(s) 108, 291, 296
BfoI RGCGCY 1 cut(s) 317
Bme1390I CCNGG 1 cut(s) 330
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 4 cut(s) 268, 290, 382, 401
BpiI GAAGAC 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 328
Bsc4I CCNNNNNNNGG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 335
BseMII CTCAG 1 cut(s) 261
BshFI GGCC 2 cut(s) 124, 347
BslI CCNNNNNNNGG 1 cut(s) 335
BsnI GGCC 2 cut(s) 124, 347
BspANI GGCC 2 cut(s) 124, 347
BspCNI CTCAG 1 cut(s) 260
BspHI TCATGA 1 cut(s) 196
BssECI CCNNGG 1 cut(s) 328
BssNI GRCGYC 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 42, 103
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 247
BstF5I GGATG 1 cut(s) 416
BstH2I RGCGCY 1 cut(s) 317
BstHHI GCGC 1 cut(s) 316
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstV2I GAAGAC 1 cut(s) 71
BsuRI GGCC 2 cut(s) 124, 347
BtsCI GGATG 1 cut(s) 416
BtsIMutI CAGTG 1 cut(s) 99
CaiI CAGNNNCTG 1 cut(s) 260
CciI TCATGA 1 cut(s) 196
CfoI GCGC 1 cut(s) 316
CseI GACGC 1 cut(s) 322
CviAII CATG 1 cut(s) 197
DdeI CTNAG 1 cut(s) 247
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco147I AGGCCT 1 cut(s) 347
Eco57I CTGAAG 2 cut(s) 237, 338
EcoRI GAATTC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 328
EcoT22I ATGCAT 2 cut(s) 283, 416
FaeI CATG 1 cut(s) 200
FaiI YATR 6 cut(s) 8, 153, 180, 198, 270, 398
FatI CATG 1 cut(s) 196
FspBI CTAG 3 cut(s) 108, 291, 296
GlaI GCGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 317
HaeIII GGCC 2 cut(s) 124, 347
HgaI GACGC 1 cut(s) 322
HhaI GCGC 1 cut(s) 316
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 1 cut(s) 200
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 3 cut(s) 72, 166, 216
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 3 cut(s) 171, 304, 338
Hpy188III TCNNGA 2 cut(s) 197, 275
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 2 cut(s) 42, 103
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 281, 414
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 247
HpySE526I ACGT 1 cut(s) 88
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 1 cut(s) 200
HspAI GCGC 1 cut(s) 314
LmnI GCTCC 1 cut(s) 98
LweI GCATC 4 cut(s) 268, 290, 382, 401
MaeI CTAG 3 cut(s) 108, 291, 296
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 1 cut(s) 373
MboII GAAGA 3 cut(s) 71, 212, 344
MfeI CAATTG 1 cut(s) 112
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 3 cut(s) 112, 207, 221
MluNI TGGCCA 1 cut(s) 124
MlyI GAGTC 1 cut(s) 66
MmeI TCCRAC 1 cut(s) 316
MnlI CCTC 5 cut(s) 107, 127, 256, 332, 358
Mox20I TGGCCA 1 cut(s) 124
Mph1103I ATGCAT 2 cut(s) 283, 416
MscI TGGCCA 1 cut(s) 124
MseI TTAA 1 cut(s) 161
MslI CAYNNNNRTG 1 cut(s) 371
Msp20I TGGCCA 1 cut(s) 124
MspR9I CCNGG 1 cut(s) 330
MunI CAATTG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 330
MwoI GCNNNNNNNGC 1 cut(s) 287
NlaIII CATG 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 2 cut(s) 283, 416
OliI CACNNNNGTG 1 cut(s) 371
PagI TCATGA 1 cut(s) 196
PceI AGGCCT 1 cut(s) 347
PfeI GAWTC 2 cut(s) 166, 216
PflFI GACNNNGTC 1 cut(s) 75
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
Ppu21I YACGTR 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 371
SaqAI TTAA 1 cut(s) 161
SchI GAGTC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 330
SetI ASST 8 cut(s) 91, 95, 138, 253, 259, 292, 373, 409
SfaNI GCATC 4 cut(s) 268, 290, 382, 401
SmiMI CAYNNNNRTG 1 cut(s) 371
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 3 cut(s) 112, 207, 221
SseBI AGGCCT 1 cut(s) 347
SspMI CTAG 3 cut(s) 108, 291, 296
StuI AGGCCT 1 cut(s) 347
StyD4I CCNGG 1 cut(s) 328
TaaI ACNGT 2 cut(s) 42, 103
TaiI ACGT 1 cut(s) 91
TaqII GACCGA 1 cut(s) 65
TasI AATT 3 cut(s) 112, 207, 221
TfiI GAWTC 2 cut(s) 166, 216
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 373
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 75
XapI RAATTY 2 cut(s) 207, 221
XspI CTAG 3 cut(s) 108, 291, 296
Zsp2I ATGCAT 2 cut(s) 283, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.