RLG00000004172

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009036
Physical Location & Seq
Reverse (-)
56881785 .. 56882228
444 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004172

Sequence Viewer

Length: 315 bp
ATGGTCCAGTGTTGCATGACATTCCACCACTACGTATCTTGCCTCGGCGATAACGTTAGCTACATGGTTATTGCTGTGCCAACAAGTGAAATGCCGCCGGACGTCGACTACGGAAGCTCTATGATTTCAACTGCTTTGCCTCCGAGAAATCTTGACTGGGGTGTTCAGTTGGCATGGGATAAGCCTGACTGTGGTTTTTGTGAGCACAATGGTCTTTTTTGTGGATCAGATCCTGCCAAAAGTTCCAAGATTCGATTCGGGGCATCCCTTTTTCTACGAAAACCGGTATGTCATTTGAAGCAAAGTATGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

105

Amino Acids

11.48

Weight (kDa)

6.37

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 105
AccI GTMKAC 1 cut(s) 105
AciI CCGC 1 cut(s) 95
AclI AACGTT 1 cut(s) 54
AclWI GGATC 2 cut(s) 224, 232
AcyI GRCGYC 1 cut(s) 102
AfiI CCNNNNNNNGG 1 cut(s) 191
AgeI ACCGGT 1 cut(s) 283
AgsI TTSAA 2 cut(s) 129, 298
AjuI GAANNNNNNNTTGG 2 cut(s) 239, 271
AluBI AGCT 2 cut(s) 60, 117
AluI AGCT 2 cut(s) 60, 117
Alw21I GWGCWC 1 cut(s) 207
AlwI GGATC 2 cut(s) 224, 232
AlwNI CAGNNNCTG 1 cut(s) 233
AsiGI ACCGGT 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 207
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrI ACTGGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 272
BmuI ACTGGG 1 cut(s) 166
BsaAI YACGTR 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 7, 161
BseDI CCNNGG 1 cut(s) 43
BseGI GGATG 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 191
BseNI ACTGG 2 cut(s) 7, 161
BshTI ACCGGT 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 207
BsiSI CCGG 2 cut(s) 98, 284
BslI CCNNNNNNNGG 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 2 cut(s) 224, 229
BspACI CCGC 1 cut(s) 95
BspPI GGATC 2 cut(s) 224, 232
BsrFI RCCGGY 1 cut(s) 283
BsrI ACTGG 2 cut(s) 7, 161
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 43
BssMI GATC 2 cut(s) 224, 229
BssNI GRCGYC 1 cut(s) 102
Bst4CI ACNGT 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 102
BstBAI YACGTR 1 cut(s) 34
BstF5I GGATG 1 cut(s) 263
BstKTI GATC 2 cut(s) 227, 232
BstMBI GATC 2 cut(s) 224, 229
BstSNI TACGTA 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 229
BstYI RGATCY 1 cut(s) 229
BtsCI GGATG 1 cut(s) 263
BtsIMutI CAGTG 1 cut(s) 14
CaiI CAGNNNCTG 1 cut(s) 233
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 4
CspAI ACCGGT 1 cut(s) 283
CviAII CATG 3 cut(s) 16, 64, 174
CviJI RGCY 3 cut(s) 60, 117, 184
CviKI_1 RGCY 3 cut(s) 60, 117, 184
DpnI GATC 2 cut(s) 226, 231
DpnII GATC 2 cut(s) 224, 229
Eco105I TACGTA 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 3 cut(s) 19, 67, 177
FaiI YATR 7 cut(s) 17, 65, 122, 175, 289, 308, 313
FatI CATG 3 cut(s) 15, 63, 173
FblI GTMKAC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
HapII CCGG 2 cut(s) 98, 284
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 3 cut(s) 19, 67, 177
HincII GTYRAC 1 cut(s) 106
HindII GTYRAC 1 cut(s) 106
HinfI GANTC 2 cut(s) 250, 255
HpaII CCGG 2 cut(s) 98, 284
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 2 cut(s) 144, 229
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 3 cut(s) 33, 54, 102
HpyCH4V TGCA 1 cut(s) 15
HpySE526I ACGT 3 cut(s) 33, 54, 102
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 3 cut(s) 19, 67, 177
Kzo9I GATC 2 cut(s) 224, 229
LpnPI CCDG 6 cut(s) 20, 111, 142, 198, 246, 297
LweI GCATC 1 cut(s) 272
MaeII ACGT 3 cut(s) 33, 54, 102
MalI GATC 2 cut(s) 226, 231
MboI GATC 2 cut(s) 224, 229
MflI RGATCY 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 207
MnlI CCTC 2 cut(s) 53, 150
MspI CCGG 2 cut(s) 98, 284
NdeII GATC 2 cut(s) 224, 229
NlaIII CATG 3 cut(s) 19, 67, 177
NmeAIII GCCGAG 1 cut(s) 24
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 2 cut(s) 250, 255
PinAI ACCGGT 1 cut(s) 283
PkrI GCNGC 1 cut(s) 96
Ppu21I YACGTR 1 cut(s) 34
Psp1406I AACGTT 1 cut(s) 54
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 229
SalI GTCGAC 1 cut(s) 104
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 2 cut(s) 224, 229
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 1 cut(s) 207
SetI ASST 5 cut(s) 36, 57, 62, 105, 119
SfaNI GCATC 1 cut(s) 272
SinI GGWCC 1 cut(s) 4
SnaBI TACGTA 1 cut(s) 34
SsiI CCGC 1 cut(s) 95
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 3 cut(s) 36, 57, 105
TaqI TCGA 2 cut(s) 105, 253
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 2 cut(s) 250, 255
TscAI CASTG 1 cut(s) 14
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 4
XmiI GTMKAC 1 cut(s) 105
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.