Rh3BG307800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0009036
Physical Location & Seq
Forward (+)
31079011 .. 31081350
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG307800.1

Sequence Viewer

Length: 312 bp
ATGAGTGGTAACGTAGATCACATTCAATCTTTGCCCATCAAATATCTCGTTGTTCATGACGAATTAATGCAACAGGACACGACAAATTGCGACTTGACGGTGAACTCGAGGCTCTGGTGGGGCGGAGGCGGTGACTTACTGGCAGCCTGTACCGGCCGGCAAGGCGGCCGCCGCTCCGAAAACGCCGACGACCGGTTCCAGATCAAGATGGAGAAGCGATCTATGACACGGTCGACGAGGATGAGTACGACGCGATCATCGCCAAGCGCCGCGAGGAGGTCGGGGACTTCATCGAGGACGACGACGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.39

Weight (kDa)

10.02

Isoelectric Point (pI)

92.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 174
AccI GTMKAC 1 cut(s) 233
AccII CGCG 2 cut(s) 253, 272
AciI CCGC 6 cut(s) 123, 129, 165, 169, 172, 270
AcoI YGGCCR 2 cut(s) 154, 166
AfaI GTAC 2 cut(s) 151, 247
AfiI CCNNNNNNNGG 2 cut(s) 192, 276
AgeI ACCGGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 3 cut(s) 154, 166, 306
ApeKI GCWGC 1 cut(s) 143
AseI ATTAAT 1 cut(s) 65
AsiGI ACCGGT 1 cut(s) 192
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 112, 143
AvaI CYCGRG 1 cut(s) 106
BbvI GCAGC 1 cut(s) 155
BccI CCATC 2 cut(s) 44, 202
BfaI CTAG 1 cut(s) 310
BfoI RGCGCY 1 cut(s) 270
BglI GCCNNNNNGGC 1 cut(s) 162
BisI GCNGC 5 cut(s) 144, 166, 169, 172, 270
BlsI GCNGC 5 cut(s) 145, 167, 170, 173, 271
BmeT110I CYCGRG 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 276
Bse118I RCCGGY 3 cut(s) 152, 156, 192
Bse1I ACTGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 246
BseLI CCNNNNNNNGG 2 cut(s) 192, 276
BseNI ACTGG 1 cut(s) 144
BseRI GAGGAG 1 cut(s) 289
BseX3I CGGCCG 2 cut(s) 154, 166
BseXI GCAGC 1 cut(s) 155
Bsh1236I CGCG 2 cut(s) 253, 272
Bsh1285I CGRYCG 4 cut(s) 157, 169, 193, 233
BshFI GGCC 3 cut(s) 156, 168, 308
BshTI ACCGGT 1 cut(s) 192
BsiEI CGRYCG 4 cut(s) 157, 169, 193, 233
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 3 cut(s) 153, 157, 193
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 192, 276
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 3 cut(s) 156, 168, 308
BsoBI CYCGRG 1 cut(s) 106
Bsp143I GATC 4 cut(s) 16, 201, 218, 254
BspACI CCGC 6 cut(s) 123, 129, 165, 169, 172, 270
BspANI GGCC 3 cut(s) 156, 168, 308
BspFNI CGCG 2 cut(s) 253, 272
BspHI TCATGA 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 174
BsrFI RCCGGY 3 cut(s) 152, 156, 192
BsrI ACTGG 1 cut(s) 144
BssAI RCCGGY 3 cut(s) 152, 156, 192
BssMI GATC 4 cut(s) 16, 201, 218, 254
Bst4CI ACNGT 2 cut(s) 100, 231
BstC8I GCNNGC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 246
BstFNI CGCG 2 cut(s) 253, 272
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 4 cut(s) 19, 204, 221, 257
BstMBI GATC 4 cut(s) 16, 201, 218, 254
BstMCI CGRYCG 4 cut(s) 157, 169, 193, 233
BstMWI GCNNNNNNNGC 3 cut(s) 162, 171, 259
BstUI CGCG 2 cut(s) 253, 272
BstV1I GCAGC 1 cut(s) 155
BstZI CGGCCG 2 cut(s) 154, 166
BsuRI GGCC 3 cut(s) 156, 168, 308
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 158
CciI TCATGA 1 cut(s) 55
CciNI GCGGCCGC 1 cut(s) 166
CfoI GCGC 1 cut(s) 269
Cfr10I RCCGGY 3 cut(s) 152, 156, 192
CseI GACGC 1 cut(s) 259
Csp6I GTAC 2 cut(s) 150, 246
CspAI ACCGGT 1 cut(s) 192
CviAII CATG 1 cut(s) 56
CviJI RGCY 5 cut(s) 112, 146, 156, 168, 308
CviKI_1 RGCY 5 cut(s) 112, 146, 156, 168, 308
CviQI GTAC 2 cut(s) 150, 246
DpnI GATC 4 cut(s) 18, 203, 220, 256
DpnII GATC 4 cut(s) 16, 201, 218, 254
EaeI YGGCCR 2 cut(s) 154, 166
EagI CGGCCG 2 cut(s) 154, 166
EciI GGCGGA 1 cut(s) 138
EclXI CGGCCG 2 cut(s) 154, 166
Eco52I CGGCCG 2 cut(s) 154, 166
Eco88I CYCGRG 1 cut(s) 106
FaeI CATG 1 cut(s) 59
FaiI YATR 2 cut(s) 57, 224
FaqI GGGAC 1 cut(s) 298
FatI CATG 1 cut(s) 55
FblI GTMKAC 1 cut(s) 233
Fnu4HI GCNGC 5 cut(s) 144, 166, 169, 172, 270
FokI GGATG 1 cut(s) 253
Fsp4HI GCNGC 5 cut(s) 144, 166, 169, 172, 270
FspBI CTAG 1 cut(s) 310
GlaI GCGC 1 cut(s) 268
GluI GCNGC 5 cut(s) 144, 166, 169, 172, 270
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 3 cut(s) 156, 168, 308
HapII CCGG 3 cut(s) 153, 157, 193
HgaI GACGC 1 cut(s) 259
HhaI GCGC 1 cut(s) 269
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HpaII CCGG 3 cut(s) 153, 157, 193
HphI GGTGA 2 cut(s) 112, 143
Hpy166II GTNNAC 2 cut(s) 103, 234
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 3 cut(s) 56, 199, 205
Hpy8I GTNNAC 2 cut(s) 103, 234
Hpy99I CGWCG 5 cut(s) 191, 238, 253, 304, 307
HpyCH4III ACNGT 2 cut(s) 100, 231
HpyCH4IV ACGT 1 cut(s) 12
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 171, 259
HpySE526I ACGT 1 cut(s) 12
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 1 cut(s) 267
KroI GCCGGC 1 cut(s) 156
KroNI GCCGGC 1 cut(s) 158
Kzo9I GATC 4 cut(s) 16, 201, 218, 254
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 8 cut(s) 59, 100, 125, 160, 166, 170, 206, 212
Lsp1109I GCAGC 1 cut(s) 155
MaeI CTAG 1 cut(s) 310
MaeII ACGT 1 cut(s) 12
MaeIII GTNAC 2 cut(s) 8, 131
MalI GATC 4 cut(s) 18, 203, 220, 256
MbiI CCGCTC 1 cut(s) 174
MboI GATC 4 cut(s) 16, 201, 218, 254
MluCI AATT 2 cut(s) 62, 85
MnlI CCTC 6 cut(s) 102, 119, 231, 267, 270, 288
MroNI GCCGGC 1 cut(s) 156
MseI TTAA 1 cut(s) 65
MspI CCGG 3 cut(s) 153, 157, 193
MvnI CGCG 2 cut(s) 253, 272
MwoI GCNNNNNNNGC 3 cut(s) 162, 171, 259
NaeI GCCGGC 1 cut(s) 158
NdeII GATC 4 cut(s) 16, 201, 218, 254
NgoMIV GCCGGC 1 cut(s) 156
NlaIII CATG 1 cut(s) 59
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 131
NotI GCGGCCGC 1 cut(s) 166
PaeR7I CTCGAG 1 cut(s) 106
PagI TCATGA 1 cut(s) 55
PcsI WCGNNNNNNNCGW 2 cut(s) 104, 299
PdiI GCCGGC 1 cut(s) 158
PflFI GACNNNGTC 1 cut(s) 229
PinAI ACCGGT 1 cut(s) 192
PkrI GCNGC 5 cut(s) 145, 167, 170, 173, 271
PshBI ATTAAT 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 197
PspXI VCTCGAGB 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 229
RsaI GTAC 2 cut(s) 151, 247
RsaNI GTAC 2 cut(s) 150, 246
SalI GTCGAC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 5 cut(s) 144, 166, 169, 172, 270
Sau3AI GATC 4 cut(s) 16, 201, 218, 254
SetI ASST 2 cut(s) 15, 281
Sfr274I CTCGAG 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 2 cut(s) 62, 85
SsiI CCGC 6 cut(s) 123, 129, 165, 169, 172, 270
SspMI CTAG 1 cut(s) 310
TaaI ACNGT 2 cut(s) 100, 231
TaiI ACGT 1 cut(s) 15
TaqI TCGA 3 cut(s) 107, 233, 293
TasI AATT 2 cut(s) 62, 85
TauI GCSGC 4 cut(s) 168, 171, 174, 272
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 44, 279
Tth111I GACNNNGTC 1 cut(s) 229
VspI ATTAAT 1 cut(s) 65
XhoI CTCGAG 1 cut(s) 106
XmiI GTMKAC 1 cut(s) 233
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.