Rh1AG450200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009036
Physical Location & Seq
Reverse (-)
66948273 .. 66949336
1064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG450200.1

Sequence Viewer

Length: 312 bp
ATGGGAGGAGGAGCTCAATTTTTGAAGAGAATTCCCAGAATCAAATTCCCACAAAGACACCCAAAATCCTCAGCTTCAGGTTCTACTTCACATACTCAAGATGCATCATCAGCTAGTCTAGGGTCAGATGTTCCAGCGCCACCGAAAAACCCTGGCGTCGGAGGGAAGGCCTCTCTTCAGCCCGAACGCACACCTGTCACGGCCAGAGAAATAGATGCCATAATAGTGAGCCAAATACTACCTTACTTACAATGCAGCAGTCAGGTGGATGCATTTGATGATGAAAGAAGAACCTGGGAGCTGGGAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.02

Weight (kDa)

8.98

Isoelectric Point (pI)

51.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 2 cut(s) 30, 44
AcuI CTGAAG 2 cut(s) 60, 161
AcyI GRCGYC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 2 cut(s) 151, 293
AluBI AGCT 4 cut(s) 14, 74, 113, 301
AluI AGCT 4 cut(s) 14, 74, 113, 301
Alw21I GWGCWC 1 cut(s) 16
AoxI GGCC 2 cut(s) 168, 201
ApeKI GCWGC 1 cut(s) 255
ApoI RAATTY 2 cut(s) 30, 44
AspLEI GCGC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 16
BbvCI CCTCAGC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 267
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 2 cut(s) 153, 295
BfaI CTAG 2 cut(s) 114, 119
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme1390I CCNGG 2 cut(s) 153, 295
BmrFI CCNGG 2 cut(s) 153, 295
BmsI GCATC 4 cut(s) 91, 113, 205, 259
Bpu10I CCTNAGC 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 2 cut(s) 151, 294
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseBI CCWGG 2 cut(s) 153, 295
BseDI CCNNGG 2 cut(s) 151, 294
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 2 cut(s) 21, 24
BseXI GCAGC 1 cut(s) 267
BseYI CCCAGC 1 cut(s) 301
BshFI GGCC 2 cut(s) 170, 203
BsiHKAI GWGCWC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 158
BsnI GGCC 2 cut(s) 170, 203
Bsp1286I GDGCHC 1 cut(s) 16
BspANI GGCC 2 cut(s) 170, 203
BspCNI CTCAG 1 cut(s) 83
BssECI CCNNGG 2 cut(s) 151, 294
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 2 cut(s) 153, 295
Bst6I CTCTTC 2 cut(s) 20, 180
BstACI GRCGYC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 2 cut(s) 153, 295
BstSCI CCNGG 2 cut(s) 151, 293
BstV1I GCAGC 1 cut(s) 267
BsuRI GGCC 2 cut(s) 170, 203
BtsCI GGATG 1 cut(s) 274
CfoI GCGC 1 cut(s) 139
CseI GACGC 1 cut(s) 145
CviJI RGCY 8 cut(s) 14, 74, 113, 170, 181, 203, 231, 301
CviKI_1 RGCY 8 cut(s) 14, 74, 113, 170, 181, 203, 231, 301
DdeI CTNAG 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 201
Eam1104I CTCTTC 2 cut(s) 20, 180
EarI CTCTTC 2 cut(s) 20, 180
Ecl136II GAGCTC 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 60, 161
EcoICRI GAGCTC 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 30
EcoRII CCWGG 2 cut(s) 151, 293
EcoT22I ATGCAT 2 cut(s) 106, 274
EcoT38I GRGCYC 1 cut(s) 16
FaiI YATR 2 cut(s) 93, 221
Fnu4HI GCNGC 1 cut(s) 256
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 256
FspBI CTAG 2 cut(s) 114, 119
GlaI GCGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 256
GsaI CCCAGC 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 2 cut(s) 170, 203
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 1 cut(s) 39
Hpy188I TCNGA 2 cut(s) 127, 161
Hpy188III TCNNGA 1 cut(s) 98
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 3 cut(s) 104, 255, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 70
Hsp92I GRCGYC 1 cut(s) 156
HspAI GCGC 1 cut(s) 137
LmnI GCTCC 2 cut(s) 11, 298
Lsp1109I GCAGC 1 cut(s) 267
LweI GCATC 4 cut(s) 91, 113, 205, 259
MaeI CTAG 2 cut(s) 114, 119
MaeIII GTNAC 1 cut(s) 196
MboII GAAGA 3 cut(s) 37, 167, 300
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 3 cut(s) 17, 30, 44
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 79, 155, 181
Mph1103I ATGCAT 2 cut(s) 106, 274
MslI CAYNNNNRTG 1 cut(s) 224
MspR9I CCNGG 2 cut(s) 153, 295
MvaI CCWGG 2 cut(s) 153, 295
MwoI GCNNNNNNNGC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 2 cut(s) 106, 274
PceI AGGCCT 1 cut(s) 170
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 2 cut(s) 151, 293
PspFI CCCAGC 1 cut(s) 301
PspGI CCWGG 2 cut(s) 151, 293
RseI CAYNNNNRTG 1 cut(s) 224
SacI GAGCTC 1 cut(s) 16
SatI GCNGC 1 cut(s) 256
ScrFI CCNGG 2 cut(s) 153, 295
SduI GDGCHC 1 cut(s) 16
SetI ASST 9 cut(s) 16, 76, 82, 115, 196, 244, 267, 296, 303
SfaNI GCATC 4 cut(s) 91, 113, 205, 259
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 3 cut(s) 17, 30, 44
SseBI AGGCCT 1 cut(s) 170
SspMI CTAG 2 cut(s) 114, 119
SstI GAGCTC 1 cut(s) 16
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 151, 293
TasI AATT 3 cut(s) 17, 30, 44
TfiI GAWTC 1 cut(s) 39
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 255
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 297
XapI RAATTY 2 cut(s) 30, 44
XspI CTAG 2 cut(s) 114, 119
Zsp2I ATGCAT 2 cut(s) 106, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.