Rh1BG406200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0009036
Physical Location & Seq
Reverse (-)
52843439 .. 52844461
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG406200.1

Sequence Viewer

Length: 297 bp
ATGGGAGGAGGAGCTCATTTTTTGAAGAGAATTCCCAGAATCAAATTCCCACAAAGACACCCAAAATCCTCAGCTTCAGGTTCTACTTCACATACTCAAGATGCATCATCAGCTAGTCTAGGGTCAGATGTTCCAGCGCCACCGAAAAACCCTGGCGTCGGAGGGAAGGCCTCTCTTCAGCCCGAACGCACACCTGTGACAGCCAGAGAAATAGATGCCATAATAGTGAGCCAAATACTACCTTACTTACAATGCAGCAGTCAGGTGGATGCATTTGATGATGAAAGAAGAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.41

Weight (kDa)

9.42

Isoelectric Point (pI)

53.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 30, 44
AcuI CTGAAG 2 cut(s) 60, 161
AcyI GRCGYC 1 cut(s) 156
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 1 cut(s) 151
AleI CACNNNNGTG 1 cut(s) 194
AluBI AGCT 3 cut(s) 14, 74, 113
AluI AGCT 3 cut(s) 14, 74, 113
Alw21I GWGCWC 1 cut(s) 16
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 255
ApoI RAATTY 2 cut(s) 30, 44
AspLEI GCGC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 16
BbvCI CCTCAGC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 267
BciT130I CCWGG 1 cut(s) 153
BfaI CTAG 2 cut(s) 114, 119
BfoI RGCGCY 1 cut(s) 140
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 153
BmsI GCATC 4 cut(s) 91, 113, 205, 259
Bpu10I CCTNAGC 1 cut(s) 70
BpuEI CTTGAG 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 158
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 274
BseLI CCNNNNNNNGG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 2 cut(s) 21, 24
BseXI GCAGC 1 cut(s) 267
BshFI GGCC 1 cut(s) 170
BsiHKAI GWGCWC 1 cut(s) 16
BslI CCNNNNNNNGG 1 cut(s) 158
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 16
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 151
BssNI GRCGYC 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 153
Bst6I CTCTTC 2 cut(s) 20, 180
BstACI GRCGYC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 274
BstH2I RGCGCY 1 cut(s) 140
BstHHI GCGC 1 cut(s) 139
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 267
BsuRI GGCC 1 cut(s) 170
BtsCI GGATG 1 cut(s) 274
CfoI GCGC 1 cut(s) 139
CseI GACGC 1 cut(s) 145
CviJI RGCY 7 cut(s) 14, 74, 113, 170, 181, 203, 231
CviKI_1 RGCY 7 cut(s) 14, 74, 113, 170, 181, 203, 231
DdeI CTNAG 1 cut(s) 70
Eam1104I CTCTTC 2 cut(s) 20, 180
EarI CTCTTC 2 cut(s) 20, 180
Ecl136II GAGCTC 1 cut(s) 14
Eco147I AGGCCT 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 60, 161
EcoICRI GAGCTC 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 30
EcoRII CCWGG 1 cut(s) 151
EcoT22I ATGCAT 2 cut(s) 106, 274
EcoT38I GRGCYC 1 cut(s) 16
FaiI YATR 2 cut(s) 93, 221
Fnu4HI GCNGC 1 cut(s) 256
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 1 cut(s) 256
FspBI CTAG 2 cut(s) 114, 119
GlaI GCGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 256
HaeII RGCGCY 1 cut(s) 140
HaeIII GGCC 1 cut(s) 170
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 139
Hin1I GRCGYC 1 cut(s) 156
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HinfI GANTC 1 cut(s) 39
Hpy188I TCNGA 2 cut(s) 127, 161
Hpy188III TCNNGA 1 cut(s) 98
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 1 cut(s) 160
HpyCH4V TGCA 3 cut(s) 104, 255, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 70
Hsp92I GRCGYC 1 cut(s) 156
HspAI GCGC 1 cut(s) 137
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 8 cut(s) 49, 63, 138, 147, 165, 207, 217, 248
Lsp1109I GCAGC 1 cut(s) 267
LweI GCATC 4 cut(s) 91, 113, 205, 259
MaeI CTAG 2 cut(s) 114, 119
MaeIII GTNAC 1 cut(s) 196
MboII GAAGA 2 cut(s) 37, 167
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 2 cut(s) 30, 44
MmeI TCCRAC 1 cut(s) 139
MnlI CCTC 3 cut(s) 79, 155, 181
Mph1103I ATGCAT 2 cut(s) 106, 274
MslI CAYNNNNRTG 2 cut(s) 194, 224
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 110
NmuCI GTSAC 1 cut(s) 196
NsiI ATGCAT 2 cut(s) 106, 274
OliI CACNNNNGTG 1 cut(s) 194
PceI AGGCCT 1 cut(s) 170
PfeI GAWTC 1 cut(s) 39
PkrI GCNGC 1 cut(s) 257
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
RseI CAYNNNNRTG 2 cut(s) 194, 224
SacI GAGCTC 1 cut(s) 16
SatI GCNGC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 16
SetI ASST 8 cut(s) 16, 76, 82, 115, 196, 244, 267, 296
SfaNI GCATC 4 cut(s) 91, 113, 205, 259
SmiMI CAYNNNNRTG 2 cut(s) 194, 224
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 2 cut(s) 30, 44
SseBI AGGCCT 1 cut(s) 170
SspMI CTAG 2 cut(s) 114, 119
SstI GAGCTC 1 cut(s) 16
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 1 cut(s) 151
TasI AATT 2 cut(s) 30, 44
TfiI GAWTC 1 cut(s) 39
TseFI GTSAC 1 cut(s) 196
TseI GCWGC 1 cut(s) 255
Tsp45I GTSAC 1 cut(s) 196
TspDTI ATGAA 1 cut(s) 297
XapI RAATTY 2 cut(s) 30, 44
XspI CTAG 2 cut(s) 114, 119
Zsp2I ATGCAT 2 cut(s) 106, 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.