Rorug07G0018000

RING-H2 finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0009036
Physical Location & Seq
Forward (+)
1402543 .. 1403378
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0018000.1

Sequence Viewer

Length: 705 bp
ATGGATTCTAGGGTTTTGGTGTTGATGAGCATGCTTGTTCTTGCTCTGGCTAAAGAATATCCATACGGGTTTGAATATCCAGTATTCGATGATGAGTTTCAGAATAATGTCAATAACCAGTTTCAGTTTAACTATGATATTCCCACAACCCCATTCCCAAAATCTCCCCCTCCTTCTCCACTTATCATTTCTCCCTCGGCCTCCTCTCCCTCTCCTATGACGTCTCCTCCGATTCCTAGCAGCTCCCCCTCACCCATCATTTCTCTCTCGGCTTCCTCTCCCTCTCCCTCTCCCTCTCCTATGACGTCTCCTTCGATTCCTAGCAGCTCCCCCTCACCCTCCGCCTCACAACAGAACTCCGGCCGACGACCAAAACTACAGAGTGGTATCATGCAATGTAGTAAAAAATGTGTTAATGCATGTTCACCCTCCAAAAGCATTCTTCCTCCTCTTGTTGCCCCTCCTATATTGTACCCTTCTTGCCTCACCGGCTGTGTTTCTCATTGCACTCGGGCCACTCAGCTTCCGGAGACACCCCTTGTCCCCACTACTAAGGTCGTTGATGGTTGCACTCGTTACTGTGCCACCTCCATTGTTGCCAAATTCATTGCCTCTAAGCCTGATGAACGACCACGTCGCGTTAATGTTCAAGACGACGTGCCTAAGTGCTTTGAGATCTGCTTTTACAAGAAGATGTATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind zf-RING_2

Protein Analysis

234

Amino Acids

25.31

Weight (kDa)

8.79

Isoelectric Point (pI)

92.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 224, 308
AccII CGCG 1 cut(s) 639
AccIII TCCGGA 1 cut(s) 526
AciI CCGC 1 cut(s) 342
AcoI YGGCCR 1 cut(s) 361
AcsI RAATTY 1 cut(s) 602
AcyI GRCGYC 2 cut(s) 221, 305
AfaI GTAC 1 cut(s) 473
AgsI TTSAA 2 cut(s) 74, 650
AjiI CACGTC 2 cut(s) 635, 658
AluBI AGCT 3 cut(s) 243, 327, 523
AluI AGCT 3 cut(s) 243, 327, 523
Alw26I GTCTC 3 cut(s) 228, 312, 524
Ama87I CYCGRG 1 cut(s) 510
Aor13HI TCCGGA 1 cut(s) 526
AoxI GGCC 3 cut(s) 198, 361, 513
ApeKI GCWGC 2 cut(s) 240, 324
ApoI RAATTY 1 cut(s) 602
ArsI GACNNNNNNTTYG 2 cut(s) 295, 327
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 4 cut(s) 243, 327, 417, 478
AvaI CYCGRG 1 cut(s) 510
BbvI GCAGC 2 cut(s) 252, 336
BccI CCATC 2 cut(s) 263, 557
BcoDI GTCTC 3 cut(s) 228, 312, 524
BfaI CTAG 3 cut(s) 9, 237, 321
BfmI CTRYAG 1 cut(s) 377
BglI GCCNNNNNGGC 1 cut(s) 489
BglII AGATCT 1 cut(s) 675
BisI GCNGC 2 cut(s) 241, 325
BlsI GCNGC 2 cut(s) 242, 326
BmeT110I CYCGRG 1 cut(s) 510
BmgBI CACGTC 2 cut(s) 635, 658
BmgT120I GGNCC 1 cut(s) 513
BsaHI GRCGYC 2 cut(s) 221, 305
BsaJI CCNNGG 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bse118I RCCGGY 1 cut(s) 488
Bse1I ACTGG 2 cut(s) 80, 118
Bse3DI GCAATG 3 cut(s) 401, 502, 606
BseAI TCCGGA 1 cut(s) 526
BseDI CCNNGG 1 cut(s) 195
BseMI GCAATG 3 cut(s) 401, 502, 606
BseMII CTCAG 1 cut(s) 533
BseNI ACTGG 2 cut(s) 80, 118
BseRI GAGGAG 3 cut(s) 193, 216, 438
BseX3I CGGCCG 1 cut(s) 361
BseXI GCAGC 2 cut(s) 252, 336
Bsh1236I CGCG 1 cut(s) 639
Bsh1285I CGRYCG 1 cut(s) 364
BshFI GGCC 3 cut(s) 200, 363, 515
BsiEI CGRYCG 1 cut(s) 364
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 3 cut(s) 360, 489, 527
BslFI GGGAC 1 cut(s) 527
BsmAI GTCTC 3 cut(s) 228, 312, 524
BsmBI CGTCTC 2 cut(s) 228, 312
BsmFI GGGAC 1 cut(s) 527
BsmI GAATGC 1 cut(s) 438
BsnI GGCC 3 cut(s) 200, 363, 515
BsoBI CYCGRG 1 cut(s) 510
Bsp13I TCCGGA 1 cut(s) 526
Bsp143I GATC 1 cut(s) 675
BspACI CCGC 1 cut(s) 342
BspANI GGCC 3 cut(s) 200, 363, 515
BspCNI CTCAG 1 cut(s) 532
BspEI TCCGGA 1 cut(s) 526
BspFNI CGCG 1 cut(s) 639
BsrDI GCAATG 3 cut(s) 401, 502, 606
BsrFI RCCGGY 1 cut(s) 488
BsrI ACTGG 2 cut(s) 80, 118
BssAI RCCGGY 1 cut(s) 488
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 1 cut(s) 675
BssNI GRCGYC 2 cut(s) 221, 305
Bst4CI ACNGT 1 cut(s) 581
BstACI GRCGYC 2 cut(s) 221, 305
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 4 cut(s) 519, 552, 615, 663
BstFNI CGCG 1 cut(s) 639
BstKTI GATC 1 cut(s) 678
BstMAI GTCTC 3 cut(s) 228, 312, 524
BstMBI GATC 1 cut(s) 675
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 1 cut(s) 489
BstNSI RCATGY 2 cut(s) 34, 423
BstSFI CTRYAG 1 cut(s) 377
BstUI CGCG 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 252, 336
BstX2I RGATCY 1 cut(s) 675
BstYI RGATCY 1 cut(s) 675
BstZI CGGCCG 1 cut(s) 361
BsuRI GGCC 3 cut(s) 200, 363, 515
BtrI CACGTC 2 cut(s) 635, 658
Cac8I GCNNGC 1 cut(s) 32
Cfr10I RCCGGY 1 cut(s) 488
Cfr13I GGNCC 1 cut(s) 513
Csp6I GTAC 1 cut(s) 472
CspCI CAANNNNNGTGG 2 cut(s) 574, 609
CviAII CATG 3 cut(s) 31, 391, 420
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 4 cut(s) 519, 552, 615, 663
DpnI GATC 1 cut(s) 677
DpnII GATC 1 cut(s) 675
EaeI YGGCCR 1 cut(s) 361
EagI CGGCCG 1 cut(s) 361
EciI GGCGGA 1 cut(s) 331
EclXI CGGCCG 1 cut(s) 361
Eco52I CGGCCG 1 cut(s) 361
Eco88I CYCGRG 1 cut(s) 510
EcoT22I ATGCAT 1 cut(s) 421
Esp3I CGTCTC 2 cut(s) 228, 312
FaeI CATG 3 cut(s) 34, 394, 423
FaiI YATR 9 cut(s) 32, 64, 135, 218, 302, 392, 421, 467, 699
FaqI GGGAC 1 cut(s) 527
FatI CATG 3 cut(s) 30, 390, 419
Fnu4HI GCNGC 2 cut(s) 241, 325
Fsp4HI GCNGC 2 cut(s) 241, 325
FspBI CTAG 3 cut(s) 9, 237, 321
GluI GCNGC 2 cut(s) 241, 325
HaeIII GGCC 3 cut(s) 200, 363, 515
HapII CCGG 3 cut(s) 360, 489, 527
Hin1I GRCGYC 2 cut(s) 221, 305
Hin1II CATG 3 cut(s) 34, 394, 423
HinfI GANTC 3 cut(s) 5, 232, 316
HpaII CCGG 3 cut(s) 360, 489, 527
HphI GGTGA 4 cut(s) 243, 327, 417, 478
Hpy166II GTNNAC 1 cut(s) 425
Hpy188I TCNGA 2 cut(s) 102, 231
Hpy188III TCNNGA 2 cut(s) 527, 650
Hpy8I GTNNAC 1 cut(s) 425
Hpy99I CGWCG 3 cut(s) 369, 639, 659
HpyAV CCTTC 3 cut(s) 183, 321, 486
HpyCH4III ACNGT 1 cut(s) 581
HpyCH4IV ACGT 4 cut(s) 221, 305, 634, 657
HpyCH4V TGCA 4 cut(s) 394, 419, 507, 570
HpyF10VI GCNNNNNNNGC 1 cut(s) 489
HpyF3I CTNAG 4 cut(s) 519, 552, 615, 663
HpySE526I ACGT 4 cut(s) 221, 305, 634, 657
Hsp92I GRCGYC 2 cut(s) 221, 305
Hsp92II CATG 3 cut(s) 34, 394, 423
Kpn2I TCCGGA 1 cut(s) 526
Kzo9I GATC 1 cut(s) 675
LmnI GCTCC 2 cut(s) 248, 332
LpnPI CCDG 7 cut(s) 32, 93, 131, 373, 502, 540, 633
Lsp1109I GCAGC 2 cut(s) 252, 336
MaeI CTAG 3 cut(s) 9, 237, 321
MaeII ACGT 4 cut(s) 221, 305, 634, 657
MaeIII GTNAC 1 cut(s) 575
MalI GATC 1 cut(s) 677
MboI GATC 1 cut(s) 675
MboII GAAGA 2 cut(s) 434, 703
MflI RGATCY 1 cut(s) 675
MluCI AATT 2 cut(s) 602, 700
Mph1103I ATGCAT 1 cut(s) 421
MroI TCCGGA 1 cut(s) 526
MseI TTAA 4 cut(s) 129, 414, 642, 703
MspI CCGG 3 cut(s) 360, 489, 527
Mva1269I GAATGC 1 cut(s) 438
MvnI CGCG 1 cut(s) 639
MwoI GCNNNNNNNGC 1 cut(s) 489
NdeII GATC 1 cut(s) 675
NlaIII CATG 3 cut(s) 34, 394, 423
NmeAIII GCCGAG 2 cut(s) 176, 248
NsiI ATGCAT 1 cut(s) 421
NspI RCATGY 2 cut(s) 34, 423
PaeI GCATGC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 2 cut(s) 227, 311
PctI GAATGC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 5, 232, 316
PflFI GACNNNGTC 1 cut(s) 633
PkrI GCNGC 2 cut(s) 242, 326
PspPI GGNCC 1 cut(s) 513
PsuI RGATCY 1 cut(s) 675
PsyI GACNNNGTC 1 cut(s) 633
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SaqAI TTAA 4 cut(s) 129, 414, 642, 703
SatI GCNGC 2 cut(s) 241, 325
Sau3AI GATC 1 cut(s) 675
Sau96I GGNCC 1 cut(s) 513
SetI ASST 9 cut(s) 224, 245, 308, 329, 525, 558, 590, 637, 660
SfcI CTRYAG 1 cut(s) 377
SphI GCATGC 1 cut(s) 34
Sse9I AATT 2 cut(s) 602, 700
SsiI CCGC 1 cut(s) 342
SspMI CTAG 3 cut(s) 9, 237, 321
TaaI ACNGT 1 cut(s) 581
TaiI ACGT 4 cut(s) 224, 308, 637, 660
TaqI TCGA 2 cut(s) 87, 314
TasI AATT 2 cut(s) 602, 700
TfiI GAWTC 3 cut(s) 5, 232, 316
Tru1I TTAA 4 cut(s) 129, 414, 642, 703
Tru9I TTAA 4 cut(s) 129, 414, 642, 703
TseI GCWGC 2 cut(s) 240, 324
TspDTI ATGAA 2 cut(s) 595, 639
Tth111I GACNNNGTC 1 cut(s) 633
XapI RAATTY 1 cut(s) 602
XceI RCATGY 2 cut(s) 34, 423
XspI CTAG 3 cut(s) 9, 237, 321
ZraI GACGTC 2 cut(s) 222, 306
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.