AT5G24240

Phosphatidylinositol 4-kinase gamma

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
8230916 .. 8234150
3235 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24240.2

Sequence Viewer

Length: 1725 bp
ATGTCAGTTGCTAGTGTAGCGTTGAGTCCAGCCCTGGAGGAACTTGTCAACTTTCCAGGTATTATTGGACGGTTTGGTTTCAACTTAGACGACCCAATCCTGGTTTTTCTGACTATTGCTGGATCTGTGATCCCTAAGCGGGTCATGGAGTCAGATTCAATAGCATCTGTGAAGCTAAGGATTCAGAGTATCAAGGGTTTTTTTGTGAAGAAGCAGAAACTTCTGTATGATGGTAGAGAGGTATCTCGAAATGATTCCCAAATTCGAGATTATGGCCTTGCTGATGGGAAACTGTTGCATTTGGTTATTAGACTTTCAGATCTTCAAGCCATTTCTGTAAGAACTGTTGATGGGAAAGAGTTTGAGCTCGTTGTTGAGAGGAGTAGAAATGTTGGTTACGTGAAGCAGCAAATTGCTTCAAAGGAAAAAGAGCTCGGAATCCCCAGGGATCATGAACTCACATTAGATGGTGAAGAGCTGGATGACCAGAGACTCATCACTGATCTCTGTCAAAATGGAGACAATGTGATTCACTTGCTAATTAGCAAATCCGCTAAAGTCAGAGCTAAACCAGTGGGGAAGGATTTTGAAGTGTTTATCGAAGATGTAAATCACAAGCACAATGTGGATGGTAGAAGAGGAAAAAACATATCATCAGAAGCGAAGCCTAAAGAGTTCTTCGTGGAGCCTTTTATTGTTAATCCTGAAATTAAACTTCCGATATTGCTGAAAGAGCTTATCAGCTCCACTTTAGAAGGCTTGGAGAAGGGAAATGGCCCAATTCGATCATCTGATGGATCAGGAGGAGCTTATTTTATGCAAGATCCATCTGGACACAAGTATGTCTCTGTCTTCAAGCCCATTGACGAGGAACCAATGGCTGTGAACAATCCGCATGGACAGCCTGTTTCAGTAGATGGCGAGGGACTAAAGAAAGGCACACAGGTTGGTGAAGGAGCTATCAGAGAAGTAGCAGCCTACATTTTGGACTATCCTATGACTGGACCACGAACTTTTCCTCATGACCAAACCGGTTTTGCTGGTGTTCCGCCAACAACAATGGTCAAATGCTTGCACAAAGATTTCAACCATCCCAATGGTTACAGTTTCTCTCCTGAGAACACAAAGATAGGCTCACTGCAGATGTTTGTGAGTAATGTTGGAAGTTGCGAAGATATGGGATACCGAGTATTCCCTGTCGATCAGGTTCACAAGATATCAGTACTAGACATAAGACTGGCTAATGCTGATCGTCATGCTGGCAACATTTTGGTTAGCCGAGATGGAAAAGATGGTCAGATGGTGCTTACTCCAATAGACCATGGCTATTGCTTTCCCAATAAGTTTGAAGATTGCACATTCGAATGGCTATACTGGCCTCAAGCAAAAGAGCCATACTCTTCAGAGACATTGGAATACATCAAATCCTTGGACCCCGAGAAAGACATCGAACTTCTGAGATTCCATGGTTGGGAGATTCCACCTTCATGCACCCGTGTCCTCCGTATTTCAACCATGCTTCTAAAGAAAGGTTCTGCAAAGGGTCTCACACCTTTTACCATCGGAAGCATAATGTGCAGAGAAACACTCAAGGAAGAATCTGTGATCGAGCAAATCATACATGATGCAGAAGCCATAGTGCCCACAGAGACAACCGAAGATGAGTTTATAAGCACCGTCTCTGCCATTATGGACAACCGGCTCGACCAGTATGCTTGGAACTGA

Protein Analysis

574

Amino Acids

64.03

Weight (kDa)

5.45

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 40 - 105 6.4e-12 Ubiquitin family
ubiquitin PF00240 111 - 183 6.9e-07 Ubiquitin family
PI3_PI4_kinase PF00454 267 - 521 3.2e-58 Phosphatidylinositol 3- and 4-kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1670
AciI CCGC 4 cut(s) 139, 552, 893, 1049
AclWI GGATC 5 cut(s) 124, 130, 456, 805, 818
AcsI RAATTY 1 cut(s) 261
AcuI CTGAAG 1 cut(s) 1386
AdeI CACNNNGTG 1 cut(s) 625
AfaI GTAC 1 cut(s) 1224
AfiI CCNNNNNNNGG 4 cut(s) 100, 139, 1001, 1471
AgeI ACCGGT 1 cut(s) 1031
AgsI TTSAA 9 cut(s) 82, 159, 326, 420, 590, 856, 1087, 1349, 1512
AjnI CCWGG 4 cut(s) 33, 55, 99, 443
AluBI AGCT 9 cut(s) 175, 367, 433, 478, 566, 736, 744, 809, 959
AluI AGCT 9 cut(s) 175, 367, 433, 478, 566, 736, 744, 809, 959
Alw21I GWGCWC 2 cut(s) 369, 435
Alw26I GTCTC 7 cut(s) 484, 513, 850, 1400, 1550, 1643, 1684
AlwI GGATC 5 cut(s) 124, 130, 456, 805, 818
Ama87I CYCGRG 1 cut(s) 1436
AoxI GGCC 3 cut(s) 274, 775, 1376
ApeKI GCWGC 2 cut(s) 406, 974
ApoI RAATTY 1 cut(s) 261
AsiGI ACCGGT 1 cut(s) 1031
Asp700I GAANNNNTTC 1 cut(s) 253
AspS9I GGNCC 3 cut(s) 776, 1004, 1432
AsuHPI GGTGA 2 cut(s) 482, 962
AsuII TTCGAA 1 cut(s) 1362
AvaI CYCGRG 1 cut(s) 1436
AvaII GGWCC 2 cut(s) 1004, 1432
BaeGI GKGCMC 1 cut(s) 1644
BanII GRGCYC 2 cut(s) 369, 435
BbsI GAAGAC 1 cut(s) 844
Bbv12I GWGCWC 2 cut(s) 369, 435
BbvI GCAGC 2 cut(s) 418, 986
BcgI CGANNNNNNTGC 1 cut(s) 1694
BciT130I CCWGG 4 cut(s) 35, 57, 101, 445
BciVI GTATCC 1 cut(s) 1175
BcoDI GTCTC 7 cut(s) 484, 513, 850, 1400, 1550, 1643, 1684
BfaI CTAG 2 cut(s) 12, 1226
BfmI CTRYAG 1 cut(s) 1139
BfuI GTATCC 1 cut(s) 1175
BglII AGATCT 1 cut(s) 319
BisI GCNGC 2 cut(s) 407, 975
BlsI GCNGC 2 cut(s) 408, 976
BmcAI AGTACT 1 cut(s) 1224
Bme1390I CCNGG 4 cut(s) 35, 57, 101, 445
Bme18I GGWCC 2 cut(s) 1004, 1432
BmeT110I CYCGRG 1 cut(s) 1436
BmgT120I GGNCC 3 cut(s) 776, 1004, 1432
BmiI GGNNCC 3 cut(s) 687, 873, 1434
BmrFI CCNGG 4 cut(s) 35, 57, 101, 445
BmsI GCATC 2 cut(s) 173, 1615
BpiI GAAGAC 1 cut(s) 844
BplI GAGNNNNNCTC 4 cut(s) 1382, 1414, 1572, 1604
BpmI CTGGAG 1 cut(s) 56
Bpu10I CCTNAGC 2 cut(s) 135, 176
Bpu14I TTCGAA 1 cut(s) 1362
BpuEI CTTGAG 2 cut(s) 1365, 1574
BsaAI YACGTR 1 cut(s) 400
BsaBI GATNNNNATC 1 cut(s) 609
BsaI GGTCTC 1 cut(s) 1550
BsaJI CCNNGG 6 cut(s) 33, 443, 444, 1321, 1428, 1465
BsaWI WCCGGW 1 cut(s) 1031
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 139, 1001, 1471
Bse118I RCCGGY 2 cut(s) 1031, 1698
Bse1I ACTGG 5 cut(s) 572, 1006, 1242, 1379, 1708
Bse8I GATNNNNATC 1 cut(s) 609
BseBI CCWGG 4 cut(s) 35, 57, 101, 445
BseDI CCNNGG 6 cut(s) 33, 443, 444, 1321, 1428, 1465
BseGI GGATG 3 cut(s) 487, 634, 1090
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 4 cut(s) 100, 139, 1001, 1471
BseMII CTCAG 2 cut(s) 1107, 1448
BseNI ACTGG 5 cut(s) 572, 1006, 1242, 1379, 1708
BseRI GAGGAG 2 cut(s) 394, 819
BseSI GKGCMC 1 cut(s) 1644
BseXI GCAGC 2 cut(s) 418, 986
BsgI GTGCAG 1 cut(s) 1597
BshFI GGCC 3 cut(s) 276, 777, 1378
BshTI ACCGGT 1 cut(s) 1031
BsiHKAI GWGCWC 2 cut(s) 369, 435
BsiHKCI CYCGRG 1 cut(s) 1436
BsiSI CCGG 2 cut(s) 1032, 1699
BslFI GGGAC 1 cut(s) 939
BslI CCNNNNNNNGG 4 cut(s) 100, 139, 1001, 1471
BsmAI GTCTC 7 cut(s) 484, 513, 850, 1400, 1550, 1643, 1684
BsmBI CGTCTC 1 cut(s) 1684
BsmFI GGGAC 1 cut(s) 939
BsnI GGCC 3 cut(s) 276, 777, 1378
Bso31I GGTCTC 1 cut(s) 1550
BsoBI CYCGRG 1 cut(s) 1436
Bsp119I TTCGAA 1 cut(s) 1362
Bsp1286I GDGCHC 3 cut(s) 369, 435, 1644
Bsp19I CCATGG 2 cut(s) 1321, 1465
BspACI CCGC 4 cut(s) 139, 552, 893, 1049
BspANI GGCC 3 cut(s) 276, 777, 1378
BspCNI CTCAG 2 cut(s) 1108, 1449
BspHI TCATGA 2 cut(s) 451, 1021
BspLI GGNNCC 3 cut(s) 687, 873, 1434
BspMAI CTGCAG 1 cut(s) 1143
BspPI GGATC 5 cut(s) 124, 130, 456, 805, 818
BspQI GCTCTTC 1 cut(s) 468
BspT104I TTCGAA 1 cut(s) 1362
BspTNI GGTCTC 1 cut(s) 1550
BsrFI RCCGGY 2 cut(s) 1031, 1698
BsrI ACTGG 5 cut(s) 572, 1006, 1242, 1379, 1708
BssAI RCCGGY 2 cut(s) 1031, 1698
BssECI CCNNGG 6 cut(s) 33, 443, 444, 1321, 1428, 1465
BssT1I CCWWGG 3 cut(s) 1321, 1428, 1465
Bst2UI CCWGG 4 cut(s) 35, 57, 101, 445
Bst4CI ACNGT 5 cut(s) 72, 294, 346, 1106, 1678
Bst6I CTCTTC 3 cut(s) 468, 631, 1405
BstAPI GCANNNNNTGC 1 cut(s) 1575
BstBAI YACGTR 1 cut(s) 400
BstBI TTCGAA 1 cut(s) 1362
BstC8I GCNNGC 2 cut(s) 1073, 1261
BstDEI CTNAG 5 cut(s) 85, 135, 176, 1116, 1457
BstDSI CCRYGG 2 cut(s) 1321, 1465
BstF5I GGATG 3 cut(s) 487, 634, 1090
BstMAI GTCTC 7 cut(s) 484, 513, 850, 1400, 1550, 1643, 1684
BstMWI GCNNNNNNNGC 5 cut(s) 17, 733, 901, 1375, 1575
BstNI CCWGG 4 cut(s) 35, 57, 101, 445
BstSCI CCNGG 4 cut(s) 33, 55, 99, 443
BstSFI CTRYAG 1 cut(s) 1139
BstSLI GKGCMC 1 cut(s) 1644
BstV1I GCAGC 2 cut(s) 418, 986
BstV2I GAAGAC 1 cut(s) 844
BstX2I RGATCY 3 cut(s) 122, 319, 823
BstXI CCANNNNNNTGG 1 cut(s) 1097
BstYI RGATCY 3 cut(s) 122, 319, 823
BsuI GTATCC 1 cut(s) 1175
BsuRI GGCC 3 cut(s) 276, 777, 1378
BtgI CCRYGG 2 cut(s) 1321, 1465
BtsCI GGATG 3 cut(s) 487, 634, 1090
BtsI GCAGTG 1 cut(s) 1136
BtsIMutI CAGTG 3 cut(s) 498, 579, 1136
Cac8I GCNNGC 2 cut(s) 1073, 1261
CciI TCATGA 2 cut(s) 451, 1021
Cfr10I RCCGGY 2 cut(s) 1031, 1698
Cfr13I GGNCC 3 cut(s) 776, 1004, 1432
Csp6I GTAC 1 cut(s) 1223
CspAI ACCGGT 1 cut(s) 1031
CviQI GTAC 1 cut(s) 1223
DdeI CTNAG 5 cut(s) 85, 135, 176, 1116, 1457
DraIII CACNNNGTG 1 cut(s) 625
Eam1104I CTCTTC 3 cut(s) 468, 631, 1405
EarI CTCTTC 3 cut(s) 468, 631, 1405
EciI GGCGGA 1 cut(s) 1038
Ecl136II GAGCTC 2 cut(s) 367, 433
Eco130I CCWWGG 3 cut(s) 1321, 1428, 1465
Eco24I GRGCYC 2 cut(s) 369, 435
Eco31I GGTCTC 1 cut(s) 1550
Eco32I GATATC 1 cut(s) 1218
Eco47I GGWCC 2 cut(s) 1004, 1432
Eco53kI GAGCTC 2 cut(s) 367, 433
Eco57I CTGAAG 1 cut(s) 1386
Eco88I CYCGRG 1 cut(s) 1436
EcoICRI GAGCTC 2 cut(s) 367, 433
EcoRII CCWGG 4 cut(s) 33, 55, 99, 443
EcoRV GATATC 1 cut(s) 1218
EcoT14I CCWWGG 3 cut(s) 1321, 1428, 1465
EcoT38I GRGCYC 2 cut(s) 369, 435
ErhI CCWWGG 3 cut(s) 1321, 1428, 1465
Esp3I CGTCTC 1 cut(s) 1684
FaqI GGGAC 1 cut(s) 939
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 407, 975
FokI GGATG 3 cut(s) 494, 641, 1077
FriOI GRGCYC 2 cut(s) 369, 435
Fsp4HI GCNGC 2 cut(s) 407, 975
FspBI CTAG 2 cut(s) 12, 1226
GluI GCNGC 2 cut(s) 407, 975
GsuI CTGGAG 1 cut(s) 56
HaeIII GGCC 3 cut(s) 276, 777, 1378
HapII CCGG 2 cut(s) 1032, 1699
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HpaII CCGG 2 cut(s) 1032, 1699
HphI GGTGA 2 cut(s) 482, 962
Hpy166II GTNNAC 3 cut(s) 49, 886, 1210
Hpy188III TCNNGA 8 cut(s) 246, 266, 452, 704, 801, 831, 1022, 1115
Hpy8I GTNNAC 3 cut(s) 49, 886, 1210
HpyAV CCTTC 5 cut(s) 574, 749, 760, 947, 1494
HpyCH4III ACNGT 5 cut(s) 72, 294, 346, 1106, 1678
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 9 cut(s) 298, 820, 1075, 1141, 1356, 1491, 1538, 1578, 1628
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 733, 901, 1375, 1575
HpyF3I CTNAG 5 cut(s) 85, 135, 176, 1116, 1457
HpySE526I ACGT 1 cut(s) 399
LguI GCTCTTC 1 cut(s) 468
LmnI GCTCC 4 cut(s) 685, 749, 806, 956
Lsp1109I GCAGC 2 cut(s) 418, 986
LweI GCATC 2 cut(s) 173, 1615
MaeI CTAG 2 cut(s) 12, 1226
MaeII ACGT 1 cut(s) 399
MaeIII GTNAC 2 cut(s) 395, 1100
MflI RGATCY 3 cut(s) 122, 319, 823
MhlI GDGCHC 3 cut(s) 369, 435, 1644
MluCI AATT 5 cut(s) 261, 411, 540, 708, 780
MlyI GAGTC 3 cut(s) 34, 158, 486
MmeI TCCRAC 1 cut(s) 1141
MroXI GAANNNNTTC 1 cut(s) 253
MseI TTAA 2 cut(s) 699, 711
MslI CAYNNNNRTG 4 cut(s) 840, 1095, 1363, 1486
MspI CCGG 2 cut(s) 1032, 1699
MspR9I CCNGG 4 cut(s) 35, 57, 101, 445
MvaI CCWGG 4 cut(s) 35, 57, 101, 445
MwoI GCNNNNNNNGC 5 cut(s) 17, 733, 901, 1375, 1575
NcoI CCATGG 2 cut(s) 1321, 1465
NlaIV GGNNCC 3 cut(s) 687, 873, 1434
NmeAIII GCCGAG 1 cut(s) 1304
NspV TTCGAA 1 cut(s) 1362
PagI TCATGA 2 cut(s) 451, 1021
PasI CCCWGGG 1 cut(s) 444
PciSI GCTCTTC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 253
PfeI GAWTC 8 cut(s) 155, 181, 254, 438, 529, 1461, 1477, 1598
PinAI ACCGGT 1 cut(s) 1031
PkrI GCNGC 2 cut(s) 408, 976
PleI GAGTC 3 cut(s) 33, 157, 486
PpsI GAGTC 3 cut(s) 33, 157, 486
Ppu21I YACGTR 1 cut(s) 400
PsiI TTATAA 1 cut(s) 1670
Psp124BI GAGCTC 2 cut(s) 369, 435
Psp6I CCWGG 4 cut(s) 33, 55, 99, 443
PspGI CCWGG 4 cut(s) 33, 55, 99, 443
PspN4I GGNNCC 3 cut(s) 687, 873, 1434
PspPI GGNCC 3 cut(s) 776, 1004, 1432
PstI CTGCAG 1 cut(s) 1143
PsuI RGATCY 3 cut(s) 122, 319, 823
RsaI GTAC 1 cut(s) 1224
RsaNI GTAC 1 cut(s) 1223
RseI CAYNNNNRTG 4 cut(s) 840, 1095, 1363, 1486
SacI GAGCTC 2 cut(s) 369, 435
SapI GCTCTTC 1 cut(s) 468
SaqAI TTAA 2 cut(s) 699, 711
SatI GCNGC 2 cut(s) 407, 975
Sau96I GGNCC 3 cut(s) 776, 1004, 1432
ScaI AGTACT 1 cut(s) 1224
SchI GAGTC 3 cut(s) 34, 158, 486
ScrFI CCNGG 4 cut(s) 35, 57, 101, 445
SduI GDGCHC 3 cut(s) 369, 435, 1644
SfaNI GCATC 2 cut(s) 173, 1615
SfcI CTRYAG 1 cut(s) 1139
SfuI TTCGAA 1 cut(s) 1362
SinI GGWCC 2 cut(s) 1004, 1432
SmiMI CAYNNNNRTG 4 cut(s) 840, 1095, 1363, 1486
SmlI CTYRAG 2 cut(s) 1380, 1589
SmoI CTYRAG 2 cut(s) 1380, 1589
Sse9I AATT 5 cut(s) 261, 411, 540, 708, 780
SsiI CCGC 4 cut(s) 139, 552, 893, 1049
SspMI CTAG 2 cut(s) 12, 1226
SstI GAGCTC 2 cut(s) 369, 435
StyD4I CCNGG 4 cut(s) 33, 55, 99, 443
StyI CCWWGG 3 cut(s) 1321, 1428, 1465
TaaI ACNGT 5 cut(s) 72, 294, 346, 1106, 1678
TaiI ACGT 1 cut(s) 402
TaqI TCGA 9 cut(s) 247, 265, 600, 784, 1200, 1362, 1449, 1608, 1704
TasI AATT 5 cut(s) 261, 411, 540, 708, 780
TatI WGTACW 1 cut(s) 1222
TfiI GAWTC 8 cut(s) 155, 181, 254, 438, 529, 1461, 1477, 1598
Tru1I TTAA 2 cut(s) 699, 711
Tru9I TTAA 2 cut(s) 699, 711
TscAI CASTG 3 cut(s) 505, 579, 1143
TseI GCWGC 2 cut(s) 406, 974
TspDTI ATGAA 2 cut(s) 468, 1476
TspGWI ACGGA 1 cut(s) 1493
TspRI CASTG 3 cut(s) 505, 579, 1143
VpaK11BI GGWCC 2 cut(s) 1004, 1432
XapI RAATTY 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 253
XspI CTAG 2 cut(s) 12, 1226
ZrmI AGTACT 1 cut(s) 1224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.