Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8342205.1

Orthogroup ID

OG0002728

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1012

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8342205.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

caggagctcttctgcaacggcgaaaggctcgatgaccagaggctcattgatgatattagcaagagcaatgacgatgtcattcacttggtggttcagaagtctgcaaaggtcagagctaagcgtttcgcgaaagatttggagctctcggtggtggcaattgtctcgaatgaaagaggatttaacggagaagatgacaatcgaagcaatgggaatcacgccattgcatgggattcgcccggtagacttccagatttcttgttggaaccaatcattgtcaatcccaagattgaattgccgtcttatgtgtgggatatgatcaactctacgtacgatggtatggcgaagggcagtcagcccataaggtcctctgaggggacaggagggacttacttcatgcaagattcttctcaggagatcatttcggttttcaagcctatcgatgaggagcctaatgcagtcaacaatccccacggcttacctgtatcgccagatggggaagggttgaaaagaggaacgagggtaggagaaggagccatcagggaagtagctgcattcttgttagatcatcccagaagcggccctcgcacattatctggcgagactatgggctttgctggggtgccacctacaatgttagttaggtgcttgcacaagggatttaatcatccccatggatttgatagcttatctaaacatgttaagattggatcattgcaaatgttcatgaagaatgatggaagttgcgaggacatgggtcctggtcgttttcccatggaggaggtgcacaagattagtgttttcgatatcagaatggctaatgcagataggcatgctggcaacattttgtttggaaaaggtgaagatggtcagactgtgctcattccaatcgatcatggatactgcctgcctgagaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PI3_PI4_kinase ubiquitin

Protein Analysis

305

Amino Acids

33.55

Weight (kDa)

5.38

Isoelectric Point (pI)

37.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24240 AT5G24240
fragaria_vesca	FvH4_5g04790 FvH4_7g31640 FvH4_7g31640
malus_domestica	MD06G1109000.v1.1 MD14G1129900.v1.1
prunus_persica	Prupe.2G310500_v2.0.a1 Prupe.2G310500_v2.0.a1 Prupe.5G121800_v2.0.a1
pyrus_communis	pycom06g10230
rosa_chinensis	RchiOBHm_Chr1g0380721 RchiOBHm_Chr7g0194461
rosa_laevigata	RLG00000004199 RLG00000026274
rosa_multiflora	Rmu_co8342205.1_g000001 Rmu_co8403341.1_g000001 Rmu_sc0001637.1_g000011 Rmu_sc0006267.1_g000003 Rmu_sc0034746.1_g000002 Rmu_ssc0000261.1_g000026
rosa_roxburghii	Rroxscaffold_3G00261340 Rroxscaffold_4G00279080
rosa_rugosa	Rorug01G0423900 Rorug07G0015800
rosa_samantha	Rh1AG448000 Rh1BG401100 Rh1BG403500 Rh1CG415500 Rh1CG417800 Rh1DG431300 Rh1DG433800 Rh7AG143100 Rh7BG143600 Rh7CG147400 Rh7DG145000
rosa_wichuraiana	Rw0G005880 Rw1G039000 Rw7G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	619
AccB7I	CCANNNNNTGG	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	241
AccII	CGCG	1 cut(s)	128
AciI	CCGC	1 cut(s)	576
AclWI	GGATC	1 cut(s)	715
AdeI	CACNNNGTG	1 cut(s)	88
AfaI	GTAC	1 cut(s)	329
AfiI	CCNNNNNNNGG	3 cut(s)	225, 372, 575
AflIII	ACRYGT	1 cut(s)	694
AgsI	TTSAA	3 cut(s)	290, 430, 505
AjnI	CCWGG	1 cut(s)	757
AluBI	AGCT	5 cut(s)	7, 116, 142, 548, 684
AluI	AGCT	5 cut(s)	7, 116, 142, 548, 684
Alw21I	GWGCWC	4 cut(s)	9, 144, 786, 879
Alw26I	GTCTC	2 cut(s)	166, 593
Alw44I	GTGCAC	1 cut(s)	782
AlwI	GGATC	1 cut(s)	715
AoxI	GGCC	1 cut(s)	577
ApaLI	GTGCAC	1 cut(s)	782
ApeKI	GCWGC	1 cut(s)	548
AspS9I	GGNCC	3 cut(s)	363, 578, 755
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	1 cut(s)	869
AvaII	GGWCC	2 cut(s)	363, 755
BaeGI	GKGCMC	1 cut(s)	786
BanI	GGYRCC	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	9, 144
Bbv12I	GWGCWC	4 cut(s)	9, 144, 786, 879
BbvI	GCAGC	1 cut(s)	535
BccI	CCATC	5 cut(s)	326, 485, 542, 728, 857
BceAI	ACGGC	3 cut(s)	34, 280, 487
BcgI	CGANNNNNNTGC	4 cut(s)	144, 178, 213, 247
BciT130I	CCWGG	1 cut(s)	759
BciVI	GTATCC	1 cut(s)	890
BclI	TGATCA	1 cut(s)	315
BcnI	CCSGG	1 cut(s)	237
BcoDI	GTCTC	2 cut(s)	166, 593
BfuI	GTATCC	1 cut(s)	890
BisI	GCNGC	2 cut(s)	549, 577
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	2 cut(s)	550, 578
Bme1390I	CCNGG	2 cut(s)	237, 759
Bme18I	GGWCC	2 cut(s)	363, 755
BmgT120I	GGNCC	3 cut(s)	363, 578, 755
BmiI	GGNNCC	5 cut(s)	264, 447, 532, 621, 756
BmrFI	CCNGG	2 cut(s)	237, 759
BoxI	GACNNNNGTC	1 cut(s)	753
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuMI	CCSGG	1 cut(s)	237
Bsa29I	ATCGAT	2 cut(s)	438, 888
BsaAI	YACGTR	1 cut(s)	327
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	469, 670, 771
Bsc4I	CCNNNNNNNGG	3 cut(s)	225, 372, 575
Bse3DI	GCAATG	4 cut(s)	73, 211, 219, 710
Bse8I	GATNNNNATC	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	759
BseCI	ATCGAT	2 cut(s)	438, 888
BseDI	CCNNGG	3 cut(s)	469, 670, 771
BseGI	GGATG	2 cut(s)	565, 664
BseJI	GATNNNNATC	1 cut(s)	195
BseLI	CCNNNNNNNGG	3 cut(s)	225, 372, 575
BseMI	GCAATG	4 cut(s)	73, 211, 219, 710
BseMII	CTCAG	3 cut(s)	360, 422, 900
BseRI	GAGGAG	2 cut(s)	458, 791
BseSI	GKGCMC	1 cut(s)	786
BseXI	GCAGC	1 cut(s)	535
BseYI	CCCAGC	1 cut(s)	614
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	1 cut(s)	579
BshNI	GGYRCC	1 cut(s)	619
BshVI	ATCGAT	2 cut(s)	438, 888
BsiHKAI	GWGCWC	4 cut(s)	9, 144, 786, 879
BsiSI	CCGG	1 cut(s)	237
BsiWI	CGTACG	1 cut(s)	327
BslFI	GGGAC	2 cut(s)	388, 397
BslI	CCNNNNNNNGG	3 cut(s)	225, 372, 575
BsmAI	GTCTC	2 cut(s)	166, 593
BsmFI	GGGAC	2 cut(s)	388, 397
BsmI	GAATGC	1 cut(s)	551
BsnI	GGCC	1 cut(s)	579
Bsp1286I	GDGCHC	4 cut(s)	9, 144, 786, 879
Bsp143I	GATC	5 cut(s)	315, 414, 562, 707, 889
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	2 cut(s)	670, 771
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	1 cut(s)	576
BspANI	GGCC	1 cut(s)	579
BspCNI	CTCAG	3 cut(s)	361, 421, 901
BspDI	ATCGAT	2 cut(s)	438, 888
BspFNI	CGCG	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	723
BspLI	GGNNCC	5 cut(s)	264, 447, 532, 621, 756
BspPI	GGATC	1 cut(s)	715
BspQI	GCTCTTC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	619
BsrDI	GCAATG	4 cut(s)	73, 211, 219, 710
BssECI	CCNNGG	3 cut(s)	469, 670, 771
BssMI	GATC	5 cut(s)	315, 414, 562, 707, 889
BssT1I	CCWWGG	2 cut(s)	670, 771
Bst2UI	CCWGG	1 cut(s)	759
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	327
BstC8I	GCNNGC	4 cut(s)	647, 831, 835, 905
BstDEI	CTNAG	4 cut(s)	117, 369, 408, 909
BstDSI	CCRYGG	3 cut(s)	469, 670, 771
BstF5I	GGATG	2 cut(s)	565, 664
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	5 cut(s)	318, 417, 565, 710, 892
BstMAI	GTCTC	2 cut(s)	166, 593
BstMBI	GATC	5 cut(s)	315, 414, 562, 707, 889
BstMWI	GCNNNNNNNGC	1 cut(s)	582
BstNI	CCWGG	1 cut(s)	759
BstNSI	RCATGY	2 cut(s)	698, 833
BstPAI	GACNNNNGTC	1 cut(s)	753
BstSCI	CCNGG	2 cut(s)	235, 757
BstSLI	GKGCMC	1 cut(s)	786
BstSNI	TACGTA	1 cut(s)	327
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	535
Bsu15I	ATCGAT	2 cut(s)	438, 888
BsuI	GTATCC	1 cut(s)	890
BsuRI	GGCC	1 cut(s)	579
BsuTUI	ATCGAT	2 cut(s)	438, 888
BtgI	CCRYGG	3 cut(s)	469, 670, 771
BtsCI	GGATG	2 cut(s)	565, 664
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	4 cut(s)	647, 831, 835, 905
CciI	TCATGA	1 cut(s)	723
Cfr13I	GGNCC	3 cut(s)	363, 578, 755
ClaI	ATCGAT	2 cut(s)	438, 888
Csp6I	GTAC	1 cut(s)	328
CviAII	CATG	9 cut(s)	225, 394, 671, 695, 724, 751, 772, 830, 893
CviQI	GTAC	1 cut(s)	328
DdeI	CTNAG	4 cut(s)	117, 369, 408, 909
DpnI	GATC	5 cut(s)	317, 416, 564, 709, 891
DpnII	GATC	5 cut(s)	315, 414, 562, 707, 889
DraIII	CACNNNGTG	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	14
EarI	CTCTTC	1 cut(s)	14
Ecl136II	GAGCTC	2 cut(s)	7, 142
Eco105I	TACGTA	1 cut(s)	327
Eco130I	CCWWGG	2 cut(s)	670, 771
Eco24I	GRGCYC	2 cut(s)	9, 144
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	2 cut(s)	363, 755
Eco53kI	GAGCTC	2 cut(s)	7, 142
EcoICRI	GAGCTC	2 cut(s)	7, 142
EcoO109I	RGGNCCY	2 cut(s)	363, 755
EcoRII	CCWGG	1 cut(s)	757
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	2 cut(s)	670, 771
EcoT38I	GRGCYC	2 cut(s)	9, 144
ErhI	CCWWGG	2 cut(s)	670, 771
FaeI	CATG	9 cut(s)	228, 397, 674, 698, 727, 754, 775, 833, 896
FaqI	GGGAC	2 cut(s)	388, 397
FatI	CATG	9 cut(s)	224, 393, 670, 694, 723, 750, 771, 829, 892
FbaI	TGATCA	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	549, 577
FokI	GGATG	2 cut(s)	552, 651
FriOI	GRGCYC	2 cut(s)	9, 144
Fsp4HI	GCNGC	2 cut(s)	549, 577
GluI	GCNGC	2 cut(s)	549, 577
GsaI	CCCAGC	1 cut(s)	618
HaeIII	GGCC	1 cut(s)	579
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	9 cut(s)	228, 397, 674, 698, 727, 754, 775, 833, 896
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HinfI	GANTC	3 cut(s)	211, 230, 401
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	869
Hpy166II	GTNNAC	3 cut(s)	242, 460, 784
Hpy188I	TCNGA	5 cut(s)	96, 113, 370, 809, 870
Hpy188III	TCNNGA	5 cut(s)	127, 163, 248, 410, 724
Hpy8I	GTNNAC	3 cut(s)	242, 460, 784
HpyAV	CCTTC	3 cut(s)	337, 491, 521
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	582
HpyF3I	CTNAG	4 cut(s)	117, 369, 408, 909
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	9 cut(s)	228, 397, 674, 698, 727, 754, 775, 833, 896
Ksp22I	TGATCA	1 cut(s)	315
Kzo9I	GATC	5 cut(s)	315, 414, 562, 707, 889
LguI	GCTCTTC	1 cut(s)	14
LmnI	GCTCC	4 cut(s)	4, 139, 445, 530
Lsp1109I	GCAGC	1 cut(s)	535
MaeII	ACGT	1 cut(s)	326
MalI	GATC	5 cut(s)	317, 416, 564, 709, 891
MboI	GATC	5 cut(s)	315, 414, 562, 707, 889
MboII	GAAGA	4 cut(s)	200, 396, 739, 872
MfeI	CAATTG	1 cut(s)	156
MhlI	GDGCHC	4 cut(s)	9, 144, 786, 879
MluCI	AATT	2 cut(s)	156, 290
MmeI	TCCRAC	1 cut(s)	240
MseI	TTAA	3 cut(s)	180, 660, 699
MslI	CAYNNNNRTG	1 cut(s)	669
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	237, 759
MunI	CAATTG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	759
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	582
NciI	CCSGG	1 cut(s)	237
NcoI	CCATGG	2 cut(s)	670, 771
NdeII	GATC	5 cut(s)	315, 414, 562, 707, 889
NlaIII	CATG	9 cut(s)	228, 397, 674, 698, 727, 754, 775, 833, 896
NlaIV	GGNNCC	5 cut(s)	264, 447, 532, 621, 756
NruI	TCGCGA	1 cut(s)	128
NspI	RCATGY	2 cut(s)	698, 833
PaeI	GCATGC	1 cut(s)	833
PagI	TCATGA	1 cut(s)	723
PciI	ACATGT	1 cut(s)	694
PciSI	GCTCTTC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	551
PfeI	GAWTC	3 cut(s)	211, 230, 401
Pfl23II	CGTACG	1 cut(s)	327
PflFI	GACNNNGTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	550, 578
Ppu21I	YACGTR	1 cut(s)	327
PpuMI	RGGWCCY	2 cut(s)	363, 755
PscI	ACATGT	1 cut(s)	694
PshAI	GACNNNNGTC	1 cut(s)	753
Psp124BI	GAGCTC	2 cut(s)	9, 144
Psp5II	RGGWCCY	2 cut(s)	363, 755
Psp6I	CCWGG	1 cut(s)	757
PspFI	CCCAGC	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	757
PspLI	CGTACG	1 cut(s)	327
PspN4I	GGNNCC	5 cut(s)	264, 447, 532, 621, 756
PspPI	GGNCC	3 cut(s)	363, 578, 755
PspPPI	RGGWCCY	2 cut(s)	363, 755
PsyI	GACNNNGTC	1 cut(s)	74
RruI	TCGCGA	1 cut(s)	128
RsaI	GTAC	1 cut(s)	329
RsaNI	GTAC	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	669
SacI	GAGCTC	2 cut(s)	9, 144
SapI	GCTCTTC	1 cut(s)	14
SaqAI	TTAA	3 cut(s)	180, 660, 699
SatI	GCNGC	2 cut(s)	549, 577
Sau3AI	GATC	5 cut(s)	315, 414, 562, 707, 889
Sau96I	GGNCC	3 cut(s)	363, 578, 755
ScrFI	CCNGG	2 cut(s)	237, 759
SduI	GDGCHC	4 cut(s)	9, 144, 786, 879
SinI	GGWCC	2 cut(s)	363, 755
SmiMI	CAYNNNNRTG	1 cut(s)	669
SnaBI	TACGTA	1 cut(s)	327
SphI	GCATGC	1 cut(s)	833
Sse9I	AATT	2 cut(s)	156, 290
SsiI	CCGC	1 cut(s)	576
SstI	GAGCTC	2 cut(s)	9, 144
StyD4I	CCNGG	2 cut(s)	235, 757
StyI	CCWWGG	2 cut(s)	670, 771
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	6 cut(s)	30, 164, 199, 438, 801, 888
TasI	AATT	2 cut(s)	156, 290
TauI	GCSGC	1 cut(s)	579
TfiI	GAWTC	3 cut(s)	211, 230, 401
Tru1I	TTAA	3 cut(s)	180, 660, 699
Tru9I	TTAA	3 cut(s)	180, 660, 699
TseI	GCWGC	1 cut(s)	548
TspDTI	ATGAA	4 cut(s)	183, 382, 712, 740
TspGWI	ACGGA	1 cut(s)	198
Tth111I	GACNNNGTC	1 cut(s)	74
Van91I	CCANNNNNTGG	1 cut(s)	225
VneI	GTGCAC	1 cut(s)	782
VpaK11BI	GGWCC	2 cut(s)	363, 755
XceI	RCATGY	2 cut(s)	698, 833
XmiI	GTMKAC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.