FvH4_7g31640

Phosphatidylinositol 4-kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
22829217 .. 22832200
2984 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31640.t2

Sequence Viewer

Length: 1725 bp
ATGTCTATTGCCAGTGTAGCTCTTGGTCCTGTATACGATGAATCTTTGAACTTCCCTGGTCGACATGGGCTGTCATCGGGTGACTCCATTTTGATATACCTGAGTGTTGGTGAGTCTGTGATTCCGATGTGTGTCACTGAGTCGGATTCCATTGCTGCGGTGAAACTGAGAATCCAGGCCTCGAAAGGGTTTTTTGTGAAGAAACAGAAGCTGGTTTTTGAAGGTAGGGAATTGGCTAGGAACAATTCTTGTGTTAGGGACTATGGGGTAACTGATGGGAACCTGTTGCACTTGGTACTTAGGCTTTCGGATCTCCAGGCTATTACTGTTAGGACTGTATGTGGCAAGGAGTTTGAGTTGCATGTTGAGAGGAGTAGGAATGTCGGTTATGTGAAACAACAGATTACTAAGAAAGGGAGAGAGTCTGTGGATCTCAACGATCAGGAACTTTTATGTGATGGCGAAGAGCTTGAAGATCAGAGACTCATCAATGATATATGCAAAAGTAATGATGCTGTTATTCATTTGCTTGTTAGGAAATCTGCAAAGGTCAGAGCTAAACCTATAGAGAAGGATTTTGTAGTGTCAATTGAGGCTTTAAATTTGAATGAGAAGAAGCCTGCTTGTACCAAAGACGTTGTGGGATGTCAAGTTTTAGGGAGGAAGTCAATTGGAAGAGAAGTCATTTTGGAACCTCTAATTGTAAATCCGAAGATTGAATTTTCGATAGGGATCAAAAAGCTTATTTACTCTACTTTGGATGGGCTAGAAAGAGGCTGTGTGCCAATTCCCTCTTCAGATGGATCTGGTGGAGCTTATTTTATGCAAGACTCATCTGGTATGAAGTATGTTTCTGTTTTTAAGCCAATAGATGAGGAACCGATGGCAGTGAACAATCCTCGAGGACTGCCCTTGTCATTAAATGGTGAAGGTTTGAAGAAGGGTACAAGGGTCGGAGAAGGGGCATTGAGGGAAGTTGCAGCTTACACTCTGGATCATCCAATGACTGGACCTCGTACGTTTTATAATGAGGAGAAGGGTTTTGCCGGGGTGCCACCCACAGTTATGGTGAAGTGTTTGCACAATGGATTTAATCATCCAGAAGGTTATAAGTCTGCTGCCAAGAACATGAAGATTGGATCACTTCAAATGTTCATGAAAAACCAAGGAAGTTGCGAAGATATTGGTCCTCGTGCTTTTCCAGTGCAAGAGGTACATAAAATTTCTGTGTTGGACATGAGGTTGGCAAATGCAGACAGGCATGCTGGAAACATACTGATTAGCAGGGATAGTGAAGACAGTGAGATAGTGCTTATTCCCATTGATCATGGGTATTGTTTGCCCGAGAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCTCAAGCTCAACAACCTTTTTCCTCAGACACTATTGACTATATCAAATCACTAGATGCTGAACAAGATATTGGACTTTTGAAGTTTCATGGATGGAACCTACCACCCGATTGTGCGCGCACTCTTCGTATTTCCACCATGCTCTTAAAGAAAGGTGCAGAGAGAGGACTCACTCCTTTTGCCATTGGAAGCCTCATGTGTAGGGAGACTTTGAAGAAAAAATCTGTTATTGAACAGATCATTCAAGAAGCAAAAGAAGCTGAACTCCCTGGAACAAGTGAGGCTTCATTTCTCGAATCCGTTTCATCAATTATGGATCGCTACCTTGACAAGCTTTACTAA

Protein Analysis

575

Amino Acids

63.58

Weight (kDa)

6.08

Isoelectric Point (pI)

35.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 37 - 102 1.9e-13 Ubiquitin family
ubiquitin PF00240 108 - 180 6.7e-09 Ubiquitin family
PI3_PI4_kinase PF00454 269 - 451 3.1e-39 Phosphatidylinositol 3- and 4-kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1026, 1110
AbsI CCTCGAGG 1 cut(s) 900
AccB1I GGYRCC 1 cut(s) 1051
AccB7I CCANNNNNTGG 1 cut(s) 1007
AccI GTMKAC 2 cut(s) 33, 61
AccII CGCG 1 cut(s) 1501
AciI CCGC 1 cut(s) 158
AclWI GGATC 7 cut(s) 318, 438, 740, 811, 1002, 1147, 1707
AcsI RAATTY 4 cut(s) 601, 719, 1221, 1349
AcuI CTGAAG 1 cut(s) 780
AfaI GTAC 5 cut(s) 297, 628, 946, 1018, 1215
AfiI CCNNNNNNNGG 2 cut(s) 186, 1007
AjnI CCWGG 4 cut(s) 55, 174, 315, 1651
AjuI GAANNNNNNNTTGG 4 cut(s) 778, 810, 1437, 1469
Alw26I GTCTC 2 cut(s) 475, 1583
AlwI GGATC 7 cut(s) 318, 438, 740, 811, 1002, 1147, 1707
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 2 cut(s) 900, 1343
AoxI GGCC 2 cut(s) 177, 1382
ApeKI GCWGC 3 cut(s) 155, 980, 1118
ApoI RAATTY 4 cut(s) 601, 719, 1221, 1349
AspLEI GCGC 2 cut(s) 1501, 1503
AspS9I GGNCC 3 cut(s) 26, 1010, 1187
AsuC2I CCSGG 1 cut(s) 1048
AsuHPI GGTGA 5 cut(s) 92, 122, 172, 938, 1081
AvaI CYCGRG 2 cut(s) 900, 1343
AvaII GGWCC 3 cut(s) 26, 1010, 1187
BaeI ACNNNNGTAYC 2 cut(s) 936, 969
BanI GGYRCC 1 cut(s) 1051
BauI CACGAG 1 cut(s) 1191
BbsI GAAGAC 1 cut(s) 1302
BbvI GCAGC 3 cut(s) 142, 992, 1105
BccI CCATC 6 cut(s) 269, 452, 755, 794, 877, 1470
BciT130I CCWGG 4 cut(s) 57, 176, 317, 1653
BclI TGATCA 1 cut(s) 1324
BcnI CCSGG 1 cut(s) 1048
BcoDI GTCTC 2 cut(s) 475, 1583
BfaI CTAG 3 cut(s) 237, 767, 1436
BfmI CTRYAG 1 cut(s) 564
BisI GCNGC 3 cut(s) 156, 981, 1119
BlsI GCNGC 3 cut(s) 157, 982, 1120
Bme1390I CCNGG 5 cut(s) 57, 176, 317, 1048, 1653
Bme18I GGWCC 3 cut(s) 26, 1010, 1187
BmeT110I CYCGRG 2 cut(s) 900, 1343
BmgT120I GGNCC 3 cut(s) 26, 1010, 1187
BmiI GGNNCC 5 cut(s) 281, 693, 879, 1053, 1481
BmrFI CCNGG 5 cut(s) 57, 176, 317, 1048, 1653
BmsI GCATC 2 cut(s) 502, 1429
BpiI GAAGAC 1 cut(s) 1302
BpmI CTGGAG 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 1371
BpuMI CCSGG 1 cut(s) 1048
BsaBI GATNNNNATC 1 cut(s) 731
BsaJI CCNNGG 4 cut(s) 55, 1047, 1165, 1651
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 1007
Bse1I ACTGG 4 cut(s) 12, 1012, 1202, 1385
Bse3DI GCAATG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 731
BseBI CCWGG 4 cut(s) 57, 176, 317, 1653
BseDI CCNNGG 4 cut(s) 55, 1047, 1165, 1651
BseGI GGATG 5 cut(s) 650, 766, 997, 1096, 1481
BseJI GATNNNNATC 1 cut(s) 731
BseLI CCNNNNNNNGG 2 cut(s) 186, 1007
BseMI GCAATG 1 cut(s) 150
BseMII CTCAG 4 cut(s) 92, 129, 158, 1422
BseNI ACTGG 4 cut(s) 12, 1012, 1202, 1385
BsePI GCGCGC 1 cut(s) 1499
BseRI GAGGAG 2 cut(s) 385, 1046
BseXI GCAGC 3 cut(s) 142, 992, 1105
BsgI GTGCAG 1 cut(s) 1560
Bsh1236I CGCG 1 cut(s) 1501
BshFI GGCC 2 cut(s) 179, 1384
BshNI GGYRCC 1 cut(s) 1051
BsiHKCI CYCGRG 2 cut(s) 900, 1343
BsiSI CCGG 1 cut(s) 1047
BsiWI CGTACG 1 cut(s) 1016
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 186, 1007
BsmAI GTCTC 2 cut(s) 475, 1583
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 2 cut(s) 179, 1384
BsoBI CYCGRG 2 cut(s) 900, 1343
BspACI CCGC 1 cut(s) 158
BspANI GGCC 2 cut(s) 179, 1384
BspCNI CTCAG 4 cut(s) 93, 130, 159, 1421
BspFNI CGCG 1 cut(s) 1501
BspHI TCATGA 1 cut(s) 1155
BspLI GGNNCC 5 cut(s) 281, 693, 879, 1053, 1481
BspPI GGATC 7 cut(s) 318, 438, 740, 811, 1002, 1147, 1707
BspQI GCTCTTC 1 cut(s) 459
BspT107I GGYRCC 1 cut(s) 1051
BsrDI GCAATG 1 cut(s) 150
BsrI ACTGG 4 cut(s) 12, 1012, 1202, 1385
BssECI CCNNGG 4 cut(s) 55, 1047, 1165, 1651
BssHII GCGCGC 1 cut(s) 1499
BssNAI GTATAC 1 cut(s) 34
BssSI CACGAG 1 cut(s) 1191
BssT1I CCWWGG 1 cut(s) 1165
Bst1107I GTATAC 1 cut(s) 34
Bst2BI CACGAG 1 cut(s) 1191
Bst2UI CCWGG 4 cut(s) 57, 176, 317, 1653
Bst4CI ACNGT 4 cut(s) 328, 337, 1063, 1301
Bst6I CTCTTC 4 cut(s) 459, 670, 799, 1512
BstC8I GCNNGC 3 cut(s) 621, 1263, 1501
BstDEI CTNAG 6 cut(s) 101, 138, 167, 299, 408, 1408
BstF5I GGATG 5 cut(s) 650, 766, 997, 1096, 1481
BstFNI CGCG 1 cut(s) 1501
BstHHI GCGC 2 cut(s) 1501, 1503
BstMAI GTCTC 2 cut(s) 475, 1583
BstMWI GCNNNNNNNGC 3 cut(s) 17, 1381, 1640
BstNI CCWGG 4 cut(s) 57, 176, 317, 1653
BstNSI RCATGY 2 cut(s) 365, 1265
BstSCI CCNGG 5 cut(s) 55, 174, 315, 1046, 1651
BstSFI CTRYAG 1 cut(s) 564
BstUI CGCG 1 cut(s) 1501
BstV1I GCAGC 3 cut(s) 142, 992, 1105
BstV2I GAAGAC 1 cut(s) 1302
BstX2I RGATCY 3 cut(s) 310, 430, 803
BstXI CCANNNNNNTGG 1 cut(s) 1066
BstYI RGATCY 3 cut(s) 310, 430, 803
BstZ17I GTATAC 1 cut(s) 34
BsuRI GGCC 2 cut(s) 179, 1384
BtsCI GGATG 5 cut(s) 650, 766, 997, 1096, 1481
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 5 cut(s) 19, 135, 894, 1209, 1306
Cac8I GCNNGC 3 cut(s) 621, 1263, 1501
CaiI CAGNNNCTG 1 cut(s) 211
CciI TCATGA 1 cut(s) 1155
CfoI GCGC 2 cut(s) 1501, 1503
Cfr13I GGNCC 3 cut(s) 26, 1010, 1187
Csp6I GTAC 5 cut(s) 296, 627, 945, 1017, 1214
CviQI GTAC 5 cut(s) 296, 627, 945, 1017, 1214
DdeI CTNAG 6 cut(s) 101, 138, 167, 299, 408, 1408
DraI TTTAAA 1 cut(s) 600
Eam1104I CTCTTC 4 cut(s) 459, 670, 799, 1512
EarI CTCTTC 4 cut(s) 459, 670, 799, 1512
Eco130I CCWWGG 1 cut(s) 1165
Eco147I AGGCCT 1 cut(s) 179
Eco47I GGWCC 3 cut(s) 26, 1010, 1187
Eco57I CTGAAG 1 cut(s) 780
Eco88I CYCGRG 2 cut(s) 900, 1343
EcoRII CCWGG 4 cut(s) 55, 174, 315, 1651
EcoT14I CCWWGG 1 cut(s) 1165
ErhI CCWWGG 1 cut(s) 1165
FalI AAGNNNNNCTT 2 cut(s) 1651, 1683
FaqI GGGAC 1 cut(s) 272
FbaI TGATCA 1 cut(s) 1324
FblI GTMKAC 2 cut(s) 33, 61
Fnu4HI GCNGC 3 cut(s) 156, 981, 1119
FokI GGATG 5 cut(s) 657, 773, 984, 1083, 1488
Fsp4HI GCNGC 3 cut(s) 156, 981, 1119
FspBI CTAG 3 cut(s) 237, 767, 1436
GlaI GCGC 2 cut(s) 1500, 1502
GluI GCNGC 3 cut(s) 156, 981, 1119
GsuI CTGGAG 1 cut(s) 299
HaeIII GGCC 2 cut(s) 179, 1384
HapII CCGG 1 cut(s) 1047
HhaI GCGC 2 cut(s) 1501, 1503
Hin6I GCGC 2 cut(s) 1499, 1501
HinP1I GCGC 2 cut(s) 1499, 1501
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HindIII AAGCTT 2 cut(s) 740, 1715
HpaII CCGG 1 cut(s) 1047
HphI GGTGA 5 cut(s) 92, 122, 172, 938, 1081
Hpy166II GTNNAC 3 cut(s) 34, 62, 892
Hpy188I TCNGA 9 cut(s) 126, 145, 310, 480, 554, 711, 799, 956, 1411
Hpy188III TCNNGA 6 cut(s) 443, 992, 1100, 1156, 1628, 1676
Hpy8I GTNNAC 3 cut(s) 34, 62, 892
HpyAV CCTTC 7 cut(s) 215, 565, 923, 934, 953, 1030, 1097
HpyCH4III ACNGT 4 cut(s) 328, 337, 1063, 1301
HpyCH4IV ACGT 2 cut(s) 636, 1019
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 1381, 1640
HpyF3I CTNAG 6 cut(s) 101, 138, 167, 299, 408, 1408
HpySE526I ACGT 2 cut(s) 636, 1019
HspAI GCGC 2 cut(s) 1499, 1501
Ksp22I TGATCA 1 cut(s) 1324
LguI GCTCTTC 1 cut(s) 459
LmnI GCTCC 1 cut(s) 812
Lsp1109I GCAGC 3 cut(s) 142, 992, 1105
LweI GCATC 2 cut(s) 502, 1429
MaeI CTAG 3 cut(s) 237, 767, 1436
MaeII ACGT 2 cut(s) 636, 1019
MaeIII GTNAC 3 cut(s) 80, 133, 268
MfeI CAATTG 2 cut(s) 588, 669
MflI RGATCY 3 cut(s) 310, 430, 803
MlyI GAGTC 7 cut(s) 77, 122, 149, 431, 477, 824, 1545
MmeI TCCRAC 3 cut(s) 123, 934, 1212
MseI TTAA 5 cut(s) 599, 861, 920, 1092, 1529
MslI CAYNNNNRTG 1 cut(s) 1064
MspI CCGG 1 cut(s) 1047
MspR9I CCNGG 5 cut(s) 57, 176, 317, 1048, 1653
MunI CAATTG 2 cut(s) 588, 669
MvaI CCWGG 4 cut(s) 57, 176, 317, 1653
MvnI CGCG 1 cut(s) 1501
MwoI GCNNNNNNNGC 3 cut(s) 17, 1381, 1640
NciI CCSGG 1 cut(s) 1048
NlaIV GGNNCC 5 cut(s) 281, 693, 879, 1053, 1481
NmuCI GTSAC 2 cut(s) 80, 133
NspI RCATGY 2 cut(s) 365, 1265
PaeI GCATGC 1 cut(s) 1265
PaeR7I CTCGAG 1 cut(s) 900
PagI TCATGA 1 cut(s) 1155
PauI GCGCGC 1 cut(s) 1499
PceI AGGCCT 1 cut(s) 179
PciSI GCTCTTC 1 cut(s) 459
PfeI GAWTC 5 cut(s) 41, 121, 146, 171, 1679
Pfl23II CGTACG 1 cut(s) 1016
PflMI CCANNNNNTGG 1 cut(s) 1007
PkrI GCNGC 3 cut(s) 157, 982, 1120
PleI GAGTC 7 cut(s) 77, 121, 148, 430, 477, 824, 1545
PpsI GAGTC 7 cut(s) 77, 121, 148, 430, 477, 824, 1545
PsiI TTATAA 2 cut(s) 1026, 1110
Psp6I CCWGG 4 cut(s) 55, 174, 315, 1651
PspGI CCWGG 4 cut(s) 55, 174, 315, 1651
PspLI CGTACG 1 cut(s) 1016
PspN4I GGNNCC 5 cut(s) 281, 693, 879, 1053, 1481
PspPI GGNCC 3 cut(s) 26, 1010, 1187
PspXI VCTCGAGB 1 cut(s) 900
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 3 cut(s) 310, 430, 803
PteI GCGCGC 1 cut(s) 1499
RsaI GTAC 5 cut(s) 297, 628, 946, 1018, 1215
RsaNI GTAC 5 cut(s) 296, 627, 945, 1017, 1214
RseI CAYNNNNRTG 1 cut(s) 1064
SalI GTCGAC 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 459
SaqAI TTAA 5 cut(s) 599, 861, 920, 1092, 1529
SatI GCNGC 3 cut(s) 156, 981, 1119
Sau96I GGNCC 3 cut(s) 26, 1010, 1187
SchI GAGTC 7 cut(s) 77, 122, 149, 431, 477, 824, 1545
ScrFI CCNGG 5 cut(s) 57, 176, 317, 1048, 1653
SfaNI GCATC 2 cut(s) 502, 1429
SfcI CTRYAG 1 cut(s) 564
Sfr274I CTCGAG 1 cut(s) 900
SinI GGWCC 3 cut(s) 26, 1010, 1187
SlaI CTCGAG 1 cut(s) 900
SmiMI CAYNNNNRTG 1 cut(s) 1064
SmlI CTYRAG 2 cut(s) 900, 1386
SmoI CTYRAG 2 cut(s) 900, 1386
SphI GCATGC 1 cut(s) 1265
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 1 cut(s) 158
SspMI CTAG 3 cut(s) 237, 767, 1436
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 5 cut(s) 55, 174, 315, 1046, 1651
StyI CCWWGG 1 cut(s) 1165
TaaI ACNGT 4 cut(s) 328, 337, 1063, 1301
TaiI ACGT 2 cut(s) 639, 1022
TaqI TCGA 5 cut(s) 61, 182, 725, 901, 1677
TfiI GAWTC 5 cut(s) 41, 121, 146, 171, 1679
Tru1I TTAA 5 cut(s) 599, 861, 920, 1092, 1529
Tru9I TTAA 5 cut(s) 599, 861, 920, 1092, 1529
TscAI CASTG 5 cut(s) 19, 142, 894, 1209, 1306
TseFI GTSAC 2 cut(s) 80, 133
TseI GCWGC 3 cut(s) 155, 980, 1118
Tsp45I GTSAC 2 cut(s) 80, 133
TspDTI ATGAA 9 cut(s) 54, 512, 857, 1144, 1145, 1172, 1460, 1659, 1677
TspGWI ACGGA 1 cut(s) 1672
TspRI CASTG 5 cut(s) 19, 142, 894, 1209, 1306
Van91I CCANNNNNTGG 1 cut(s) 1007
VpaK11BI GGWCC 3 cut(s) 26, 1010, 1187
XapI RAATTY 4 cut(s) 601, 719, 1221, 1349
XceI RCATGY 2 cut(s) 365, 1265
XcmI CCANNNNNNNNNTGG 1 cut(s) 637
XhoI CTCGAG 1 cut(s) 900
XmiI GTMKAC 2 cut(s) 33, 61
XspI CTAG 3 cut(s) 237, 767, 1436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.