Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001637.1

Orthogroup ID

OG0002728

Physical Location & Seq

Genomic Coordinates Forward (+)

45885 .. 47282

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001637.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atgtctattgccagtgtagctcttagtcccgtatatgaagaatctttgaacttcccttgcaatttcgccggtggatatgggcagtcatcgggtaactccattatgatatacctcagtgttggtgggtctgtgattccgatgtgtgtgactgagtcagattccattgcctcggtaaaactgagaatccaggcctcgaaagggttttttgtgaagaaacagaagctggtttttgaaggtagggaattggctaggaacaattctcgggtaagggactatggggtaactgatgggaacctattgcacttggtacttaggctttcggatctccaggctattactgttaggactgtgtgtggcaaggagtttgagttgcatgttgagaggagtagaaatgttggttatgtgaagcagcagattgctaagaaagggaaagggtctgttgatctcaaagatcaggaactcgtatgtgatggtcaagagcttgaagatcagagactcattaatgaaatatgcagaagtaacgatgctgttattcatttgctggtccggaaatctgctaaggttagagctaaacctatagaaaaggattttgtagtgtcaattgaggctttaaattcgaatgagaagaagcctgctttagccagagaagttgtgggatgtcaagttttagggaggaaagcaattggaagtgaactcgttttggaacctctaattgtaaatcctaagattgaattttcattagggattaaaaagctgatttactctactttggacgggctagagagaggctgtgagccagttcgctcttcagagggatctggtggagcttatttcatgcaagactcttctggtctgaagtatgtttctgtttttaagccaatagatgaggaaccgatggcaatgaataaccctcggggattgcccttgtcagcggatggtgaaggtttgaagaagggtacaagggttggagaaggggcattgagggaagttgcagcatacattttggatcatccaaggactgggcctcgtacattttatagtgaggagaagggctttgctggggtgccacccacagttatggtcaagtgcttgcacaaaggatttaatcatccagaaggttatgattctgctgctaaggacatgaagattggatcgcttcagacnnnnnnnnnccgcactctccgcattgccaccttgcttctaaagaaagctgcaaagagaggactcactccctttgccatcggaagcatcatgtgtagggagactttgaagagagaatctgttattgaacatatcattcaagaagcaaaagaagctcaactcccaggaacaagtgaagcttcatttctcgaatctgtgtcatcaatcatggatcaacaccttgatgagctttactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009909 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0033993 GO:0035091 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097305 GO:1901700 GO:1902074 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

PI3_PI4_kinase ubiquitin

Protein Analysis

465

Amino Acids

50.62

Weight (kDa)

8.56

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24240 AT5G24240
fragaria_vesca	FvH4_5g04790 FvH4_7g31640 FvH4_7g31640
malus_domestica	MD06G1109000.v1.1 MD14G1129900.v1.1
prunus_persica	Prupe.2G310500_v2.0.a1 Prupe.2G310500_v2.0.a1 Prupe.5G121800_v2.0.a1
pyrus_communis	pycom06g10230
rosa_chinensis	RchiOBHm_Chr1g0380721 RchiOBHm_Chr7g0194461
rosa_laevigata	RLG00000004199 RLG00000026274
rosa_multiflora	Rmu_co8342205.1_g000001 Rmu_co8403341.1_g000001 Rmu_sc0001637.1_g000011 Rmu_sc0006267.1_g000003 Rmu_sc0034746.1_g000002 Rmu_ssc0000261.1_g000026
rosa_roxburghii	Rroxscaffold_3G00261340 Rroxscaffold_4G00279080
rosa_rugosa	Rorug01G0423900 Rorug07G0015800
rosa_samantha	Rh1AG448000 Rh1BG401100 Rh1BG403500 Rh1CG415500 Rh1CG417800 Rh1DG431300 Rh1DG433800 Rh7AG143100 Rh7BG143600 Rh7CG147400 Rh7DG145000
rosa_wichuraiana	Rw0G005880 Rw1G039000 Rw7G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1063
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AccIII	TCCGGA	1 cut(s)	546
AciI	CCGC	3 cut(s)	932, 1174, 1183
AclWI	GGATC	5 cut(s)	330, 823, 1014, 1159, 1380
AcsI	RAATTY	2 cut(s)	613, 731
AcuI	CTGAAG	3 cut(s)	792, 875, 1142
AfaI	GTAC	3 cut(s)	309, 958, 1030
AfiI	CCNNNNNNNGG	2 cut(s)	198, 1019
AgsI	TTSAA	8 cut(s)	49, 233, 485, 731, 949, 1270, 1289, 1301
AjnI	CCWGG	3 cut(s)	186, 327, 1324
Alw26I	GTCTC	2 cut(s)	487, 1256
AlwI	GGATC	5 cut(s)	330, 823, 1014, 1159, 1380
AlwNI	CAGNNNCTG	1 cut(s)	223
Ama87I	CYCGRG	2 cut(s)	261, 912
Aor13HI	TCCGGA	1 cut(s)	546
AoxI	GGCC	2 cut(s)	189, 1022
ApeKI	GCWGC	4 cut(s)	409, 992, 1130, 1211
ApoI	RAATTY	2 cut(s)	613, 731
AseI	ATTAAT	1 cut(s)	501
AspS9I	GGNCC	2 cut(s)	544, 1022
AsuHPI	GGTGA	1 cut(s)	950
AsuII	TTCGAA	1 cut(s)	617
AvaI	CYCGRG	2 cut(s)	261, 912
AvaII	GGWCC	1 cut(s)	544
BaeI	ACNNNNGTAYC	2 cut(s)	948, 981
BanI	GGYRCC	1 cut(s)	1063
BbvI	GCAGC	4 cut(s)	421, 1004, 1117, 1198
BccI	CCATC	5 cut(s)	281, 464, 889, 929, 1247
BciT130I	CCWGG	3 cut(s)	188, 329, 1326
BcoDI	GTCTC	2 cut(s)	487, 1256
BfaI	CTAG	2 cut(s)	249, 779
BfmI	CTRYAG	1 cut(s)	576
BisI	GCNGC	4 cut(s)	410, 993, 1131, 1212
BlsI	GCNGC	4 cut(s)	411, 994, 1132, 1213
Bme1390I	CCNGG	3 cut(s)	188, 329, 1326
Bme18I	GGWCC	1 cut(s)	544
BmeT110I	CYCGRG	2 cut(s)	261, 912
BmgT120I	GGNCC	2 cut(s)	544, 1022
BmiI	GGNNCC	4 cut(s)	293, 705, 891, 1065
BmrFI	CCNGG	3 cut(s)	188, 329, 1326
BmrI	ACTGGG	1 cut(s)	1029
BmsI	GCATC	2 cut(s)	514, 1257
BmuI	ACTGGG	1 cut(s)	1029
BpmI	CTGGAG	1 cut(s)	311
Bpu10I	CCTNAGC	2 cut(s)	558, 1134
Bpu14I	TTCGAA	1 cut(s)	617
BsaJI	CCNNGG	4 cut(s)	168, 911, 1013, 1324
BsaWI	WCCGGW	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	2 cut(s)	198, 1019
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	3 cut(s)	12, 797, 1024
Bse3DI	GCAATG	3 cut(s)	162, 906, 1185
BseAI	TCCGGA	1 cut(s)	546
BseBI	CCWGG	3 cut(s)	188, 329, 1326
BseDI	CCNNGG	4 cut(s)	168, 911, 1013, 1324
BseGI	GGATG	4 cut(s)	662, 940, 1009, 1108
BseLI	CCNNNNNNNGG	2 cut(s)	198, 1019
BseMI	GCAATG	3 cut(s)	162, 906, 1185
BseMII	CTCAG	3 cut(s)	127, 141, 170
BseNI	ACTGG	3 cut(s)	12, 797, 1024
BseRI	GAGGAG	2 cut(s)	397, 1058
BseXI	GCAGC	4 cut(s)	421, 1004, 1117, 1198
BseYI	CCCAGC	1 cut(s)	1058
BshFI	GGCC	2 cut(s)	191, 1024
BshNI	GGYRCC	1 cut(s)	1063
BsiHKCI	CYCGRG	2 cut(s)	261, 912
BsiSI	CCGG	2 cut(s)	69, 547
BslFI	GGGAC	2 cut(s)	12, 284
BslI	CCNNNNNNNGG	2 cut(s)	198, 1019
BsmAI	GTCTC	2 cut(s)	487, 1256
BsmFI	GGGAC	2 cut(s)	12, 284
BsnI	GGCC	2 cut(s)	191, 1024
BsoBI	CYCGRG	2 cut(s)	261, 912
Bsp119I	TTCGAA	1 cut(s)	617
Bsp13I	TCCGGA	1 cut(s)	546
Bsp143I	GATC	8 cut(s)	322, 442, 451, 487, 815, 1006, 1151, 1372
BspACI	CCGC	3 cut(s)	932, 1174, 1183
BspANI	GGCC	2 cut(s)	191, 1024
BspCNI	CTCAG	3 cut(s)	126, 142, 171
BspEI	TCCGGA	1 cut(s)	546
BspLI	GGNNCC	4 cut(s)	293, 705, 891, 1065
BspPI	GGATC	5 cut(s)	330, 823, 1014, 1159, 1380
BspQI	GCTCTTC	1 cut(s)	811
BspT104I	TTCGAA	1 cut(s)	617
BspT107I	GGYRCC	1 cut(s)	1063
BsrDI	GCAATG	3 cut(s)	162, 906, 1185
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	3 cut(s)	12, 797, 1024
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	4 cut(s)	168, 911, 1013, 1324
BssMI	GATC	8 cut(s)	322, 442, 451, 487, 815, 1006, 1151, 1372
BssT1I	CCWWGG	1 cut(s)	1013
Bst2UI	CCWGG	3 cut(s)	188, 329, 1326
Bst4CI	ACNGT	3 cut(s)	340, 349, 1075
Bst6I	CTCTTC	3 cut(s)	811, 850, 1265
BstBI	TTCGAA	1 cut(s)	617
BstC8I	GCNNGC	2 cut(s)	633, 1091
BstDEI	CTNAG	9 cut(s)	23, 113, 150, 179, 311, 420, 558, 723, 1134
BstF5I	GGATG	4 cut(s)	662, 940, 1009, 1108
BstKTI	GATC	8 cut(s)	325, 445, 454, 490, 818, 1009, 1154, 1375
BstMAI	GTCTC	2 cut(s)	487, 1256
BstMBI	GATC	8 cut(s)	322, 442, 451, 487, 815, 1006, 1151, 1372
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 1182, 1313
BstNI	CCWGG	3 cut(s)	188, 329, 1326
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	3 cut(s)	186, 327, 1324
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	4 cut(s)	421, 1004, 1117, 1198
BstX2I	RGATCY	2 cut(s)	322, 815
BstXI	CCANNNNNNTGG	1 cut(s)	1078
BstYI	RGATCY	2 cut(s)	322, 815
BsuRI	GGCC	2 cut(s)	191, 1024
BtsCI	GGATG	4 cut(s)	662, 940, 1009, 1108
BtsIMutI	CAGTG	2 cut(s)	19, 121
Cac8I	GCNNGC	2 cut(s)	633, 1091
CaiI	CAGNNNCTG	1 cut(s)	223
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	544, 1022
Csp6I	GTAC	3 cut(s)	308, 957, 1029
CviAII	CATG	5 cut(s)	374, 835, 1141, 1252, 1369
CviQI	GTAC	3 cut(s)	308, 957, 1029
DdeI	CTNAG	9 cut(s)	23, 113, 150, 179, 311, 420, 558, 723, 1134
DpnI	GATC	8 cut(s)	324, 444, 453, 489, 817, 1008, 1153, 1374
DpnII	GATC	8 cut(s)	322, 442, 451, 487, 815, 1006, 1151, 1372
DraI	TTTAAA	1 cut(s)	612
Eam1104I	CTCTTC	3 cut(s)	811, 850, 1265
EarI	CTCTTC	3 cut(s)	811, 850, 1265
Eco130I	CCWWGG	1 cut(s)	1013
Eco147I	AGGCCT	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	544
Eco57I	CTGAAG	3 cut(s)	792, 875, 1142
Eco88I	CYCGRG	2 cut(s)	261, 912
EcoRII	CCWGG	3 cut(s)	186, 327, 1324
EcoT14I	CCWWGG	1 cut(s)	1013
ErhI	CCWWGG	1 cut(s)	1013
FaeI	CATG	5 cut(s)	377, 838, 1144, 1255, 1372
FalI	AAGNNNNNCTT	2 cut(s)	1324, 1356
FaqI	GGGAC	2 cut(s)	12, 284
FatI	CATG	5 cut(s)	373, 834, 1140, 1251, 1368
Fnu4HI	GCNGC	4 cut(s)	410, 993, 1131, 1212
FokI	GGATG	4 cut(s)	669, 947, 996, 1095
Fsp4HI	GCNGC	4 cut(s)	410, 993, 1131, 1212
FspBI	CTAG	2 cut(s)	249, 779
GluI	GCNGC	4 cut(s)	410, 993, 1131, 1212
GsaI	CCCAGC	1 cut(s)	1062
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	2 cut(s)	191, 1024
HapII	CCGG	2 cut(s)	69, 547
Hin1II	CATG	5 cut(s)	377, 838, 1144, 1255, 1372
HindIII	AAGCTT	1 cut(s)	1338
HpaII	CCGG	2 cut(s)	69, 547
HphI	GGTGA	1 cut(s)	950
Hpy166II	GTNNAC	1 cut(s)	692
Hpy188I	TCNGA	8 cut(s)	138, 157, 322, 492, 811, 855, 1161, 1244
Hpy188III	TCNNGA	6 cut(s)	455, 476, 547, 1112, 1301, 1349
Hpy8I	GTNNAC	1 cut(s)	692
HpyAV	CCTTC	6 cut(s)	227, 935, 946, 965, 1042, 1109
HpyCH4III	ACNGT	3 cut(s)	340, 349, 1075
HpyCH4V	TGCA	8 cut(s)	60, 301, 373, 513, 838, 992, 1093, 1214
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 1182, 1313
HpyF3I	CTNAG	9 cut(s)	23, 113, 150, 179, 311, 420, 558, 723, 1134
Hsp92II	CATG	5 cut(s)	377, 838, 1144, 1255, 1372
Kpn2I	TCCGGA	1 cut(s)	546
Kzo9I	GATC	8 cut(s)	322, 442, 451, 487, 815, 1006, 1151, 1372
LguI	GCTCTTC	1 cut(s)	811
LmnI	GCTCC	1 cut(s)	824
Lsp1109I	GCAGC	4 cut(s)	421, 1004, 1117, 1198
LweI	GCATC	2 cut(s)	514, 1257
MaeI	CTAG	2 cut(s)	249, 779
MaeIII	GTNAC	4 cut(s)	92, 145, 280, 518
MalI	GATC	8 cut(s)	324, 444, 453, 489, 817, 1008, 1153, 1374
MboI	GATC	8 cut(s)	322, 442, 451, 487, 815, 1006, 1151, 1372
MboII	GAAGA	9 cut(s)	50, 223, 497, 637, 798, 837, 961, 1156, 1282
MfeI	CAATTG	2 cut(s)	600, 681
MflI	RGATCY	2 cut(s)	322, 815
MluCI	AATT	8 cut(s)	61, 242, 256, 600, 613, 681, 711, 731
MlyI	GAGTC	4 cut(s)	161, 489, 836, 1218
MmeI	TCCRAC	1 cut(s)	946
MroI	TCCGGA	1 cut(s)	546
MseI	TTAA	5 cut(s)	501, 611, 747, 873, 1104
MslI	CAYNNNNRTG	2 cut(s)	1076, 1383
MspA1I	CMGCKG	1 cut(s)	932
MspI	CCGG	2 cut(s)	69, 547
MspR9I	CCNGG	3 cut(s)	188, 329, 1326
MunI	CAATTG	2 cut(s)	600, 681
MvaI	CCWGG	3 cut(s)	188, 329, 1326
MwoI	GCNNNNNNNGC	3 cut(s)	17, 1182, 1313
NdeII	GATC	8 cut(s)	322, 442, 451, 487, 815, 1006, 1151, 1372
NlaIII	CATG	5 cut(s)	377, 838, 1144, 1255, 1372
NlaIV	GGNNCC	4 cut(s)	293, 705, 891, 1065
NmuCI	GTSAC	1 cut(s)	145
NspI	RCATGY	1 cut(s)	377
NspV	TTCGAA	1 cut(s)	617
PceI	AGGCCT	1 cut(s)	191
PciSI	GCTCTTC	1 cut(s)	811
PfeI	GAWTC	7 cut(s)	41, 133, 158, 183, 1124, 1277, 1352
PflFI	GACNNNGTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	1019
PkrI	GCNGC	4 cut(s)	411, 994, 1132, 1213
PleI	GAGTC	4 cut(s)	160, 489, 836, 1218
PpsI	GAGTC	4 cut(s)	160, 489, 836, 1218
PshBI	ATTAAT	1 cut(s)	501
Psp6I	CCWGG	3 cut(s)	186, 327, 1324
PspFI	CCCAGC	1 cut(s)	1058
PspGI	CCWGG	3 cut(s)	186, 327, 1324
PspN4I	GGNNCC	4 cut(s)	293, 705, 891, 1065
PspPI	GGNCC	2 cut(s)	544, 1022
PstNI	CAGNNNCTG	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	322, 815
PsyI	GACNNNGTC	1 cut(s)	151
RsaI	GTAC	3 cut(s)	309, 958, 1030
RsaNI	GTAC	3 cut(s)	308, 957, 1029
RseI	CAYNNNNRTG	2 cut(s)	1076, 1383
SapI	GCTCTTC	1 cut(s)	811
SaqAI	TTAA	5 cut(s)	501, 611, 747, 873, 1104
SatI	GCNGC	4 cut(s)	410, 993, 1131, 1212
Sau3AI	GATC	8 cut(s)	322, 442, 451, 487, 815, 1006, 1151, 1372
Sau96I	GGNCC	2 cut(s)	544, 1022
SchI	GAGTC	4 cut(s)	161, 489, 836, 1218
ScrFI	CCNGG	3 cut(s)	188, 329, 1326
SfaNI	GCATC	2 cut(s)	514, 1257
SfcI	CTRYAG	1 cut(s)	576
SfuI	TTCGAA	1 cut(s)	617
SgrAI	CRCCGGYG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	2 cut(s)	1076, 1383
Sse9I	AATT	8 cut(s)	61, 242, 256, 600, 613, 681, 711, 731
SseBI	AGGCCT	1 cut(s)	191
SsiI	CCGC	3 cut(s)	932, 1174, 1183
SspMI	CTAG	2 cut(s)	249, 779
StuI	AGGCCT	1 cut(s)	191
StyD4I	CCNGG	3 cut(s)	186, 327, 1324
StyI	CCWWGG	1 cut(s)	1013
TaaI	ACNGT	3 cut(s)	340, 349, 1075
TaqI	TCGA	3 cut(s)	194, 617, 1350
TasI	AATT	8 cut(s)	61, 242, 256, 600, 613, 681, 711, 731
TfiI	GAWTC	7 cut(s)	41, 133, 158, 183, 1124, 1277, 1352
Tru1I	TTAA	5 cut(s)	501, 611, 747, 873, 1104
Tru9I	TTAA	5 cut(s)	501, 611, 747, 873, 1104
TscAI	CASTG	2 cut(s)	19, 121
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	4 cut(s)	409, 992, 1130, 1211
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	8 cut(s)	51, 519, 524, 726, 823, 917, 1157, 1332
TspRI	CASTG	2 cut(s)	19, 121
Tth111I	GACNNNGTC	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	1019
VpaK11BI	GGWCC	1 cut(s)	544
VspI	ATTAAT	1 cut(s)	501
XapI	RAATTY	2 cut(s)	613, 731
XceI	RCATGY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XspI	CTAG	2 cut(s)	249, 779

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.