Rroxscaffold_4G00279080

Phosphatidylinositol 4-kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
1972980 .. 1977121
4142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279080.1

Sequence Viewer

Length: 1737 bp
ATGTCTATTGCCAGTGTAGCTCTTAGTCCGCTATATGAAGAATCTTTGAACTTCCCTTGCAATTTCGCCGGTGGATATGGGCTGTCATCGGGTGACTCCATTATGATATACCTCAGTGTTGGTGGGTCTGTGATTCCGATGTGTGTGACTGAGTCAGATTCCATTGCCTCGGTAAAACTGAGAATCCAGGCCTCGAAAGGGTTTTTTGTGAAGAAACAGAAGCTGGTTTTTGAAGGTAGGGAATTGGCTAGGAACAATTCTCGGGTAAGGGACTATGGGGTAACTGATGGGAACCTATTGCACTTGTTAGTTAGGCTTTCGGATCTCCAGGCTATTACTGTTAGGACTGTGTGTGGCAAGGAGTTTGAGTTGCATGTTGAGAGGAGTAGAAATGTTGGTTATGTGAAGCAGCAAATTGCTAAGAAAGGGAAAGGGTCTGTTGATCTCAAAGATCAGGAACTTGTATGTGATGGTCAAGAGCTTGAAGATCAGAGACTGATTAATGAAATATGCAGAAGTAACGATGCTGTTATTCATTTGCTGGTCCGGAAATCTGCTAAGGTTAGAGCTAAACCTATAGAGAAGGATTTTGTAGTGTCAATTGAGGCTTTAAATTTGAATGAGAAGAAGCCTGCTTTAGCCAGAGAAGTTGTGGGATGTCAAGTTTTAGAGAGGAAAGCAATTGGAAGAGAACTCGTTTTGGAACCTCTAATTGTAAATCCTAAGATTGAATTTTCATTAGGGATTAAAAAGCTGATTTACTCTACTTTGGAGGGGCTAGAGAGAGGCTGTGAGCCGGTTCGCTCTTCAGAGGGATCTGGTGGAGCTTATTTCATGCAAGACTCTTCTGGTCTGAAGTATGTTTCTGTTTTTAAGCCAATAGATGAGGAACCGATGGCAATGAATAACCCTCGGGGATTGCCCTTGTCAGTGGATGGTGAAGGTTTGAAGAAGGGTACAAGGGTTGGAGAAGGGGCATTGAGGGAAGTTGCAGCATACATTTTGGATCATCCAAGGACTGGGCCTCGTACATTTTATAATGAGGAGAAGGGCTTTGCCGGGGTGCCACCCACAGTTATGGTCAAGTGCTTGCACAAAGGATTTAATCATCCAGAAGGTTATGATTCTGCTGCTAAGAACATGAAGATCGGATCGCTTCAGATGTTCATGAAAAACAAAGGAAGTTGTGAAGATATTGGTCCTCGCGCTTTTCCAGTGCAGGAGGTACATAAAATTTCTGTGCTGGACATGAGGTTGGCAAATGCAGACAGGCATGCTGGAAACATACTGATTAGTAGAGAGAGTGAAGACAGTGACATTGTGCTTATTCCCATTGATCATGGGTATTGTTTGCCTGAGAATTTTGAAGATTGCACATTTGATTGGCTTTACTGGCCTCAAGCTCAGCAACCTTATTCCTCTGACACTCTTAACTACATCAAATCATTAGATGTCGAACAAGATATTGAACTTTTGAAGTTTCATGGATGGAACCTACCACTTGAATGTGCCCGCACTCTCCGCATTGCCAGCTTGCTTCTAAAGAAAGGTGCAGAGAGAGGACTCACTCCCTTTGCCATCGGAAGAATCATGTGTAGGGAGACTTTGAAGAGAGAATCTGTTATTGAACATATCATTCAAAAAGCAAAAGAAGCTCAACTCCCAGGAACGAGTGAAGCTTCATTTCTCGAATCTGTTTCATCAATCATGGATCAACACCTTGATGGGCTTTACTAA

Protein Analysis

578

Amino Acids

64.21

Weight (kDa)

6.36

Isoelectric Point (pI)

37.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 39 - 106 4e-13 Ubiquitin family
ubiquitin PF00240 112 - 184 8.4e-09 Ubiquitin family
PI3_PI4_kinase PF00454 273 - 526 1.7e-52 Phosphatidylinositol 3- and 4-kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1038
AccB1I GGYRCC 1 cut(s) 1063
AccB7I CCANNNNNTGG 1 cut(s) 1019
AccII CGCG 1 cut(s) 1206
AccIII TCCGGA 1 cut(s) 546
AciI CCGC 3 cut(s) 29, 1513, 1522
AclWI GGATC 5 cut(s) 330, 823, 1014, 1159, 1719
AcsI RAATTY 4 cut(s) 613, 731, 1233, 1360
AcuI CTGAAG 3 cut(s) 792, 875, 1142
AfaI GTAC 3 cut(s) 958, 1030, 1227
AfiI CCNNNNNNNGG 2 cut(s) 198, 1019
AjnI CCWGG 3 cut(s) 186, 327, 1663
Alw26I GTCTC 2 cut(s) 487, 1595
AlwI GGATC 5 cut(s) 330, 823, 1014, 1159, 1719
AlwNI CAGNNNCTG 2 cut(s) 223, 496
Ama87I CYCGRG 2 cut(s) 261, 912
Aor13HI TCCGGA 1 cut(s) 546
AoxI GGCC 3 cut(s) 189, 1022, 1394
ApeKI GCWGC 3 cut(s) 409, 992, 1130
ApoI RAATTY 4 cut(s) 613, 731, 1233, 1360
AseI ATTAAT 1 cut(s) 501
AspLEI GCGC 1 cut(s) 1208
AspS9I GGNCC 3 cut(s) 544, 1022, 1199
AsuC2I CCSGG 1 cut(s) 1060
AsuHPI GGTGA 2 cut(s) 104, 950
AvaI CYCGRG 2 cut(s) 261, 912
AvaII GGWCC 2 cut(s) 544, 1199
BaeGI GKGCMC 1 cut(s) 1513
BaeI ACNNNNGTAYC 2 cut(s) 948, 981
BanI GGYRCC 1 cut(s) 1063
BbsI GAAGAC 1 cut(s) 1314
BbvI GCAGC 3 cut(s) 421, 1004, 1117
BccI CCATC 7 cut(s) 281, 464, 889, 929, 1482, 1586, 1718
BciT130I CCWGG 3 cut(s) 188, 329, 1665
BclI TGATCA 1 cut(s) 1336
BcnI CCSGG 1 cut(s) 1060
BcoDI GTCTC 2 cut(s) 487, 1595
BfaI CTAG 2 cut(s) 249, 779
BfmI CTRYAG 1 cut(s) 576
BisI GCNGC 3 cut(s) 410, 993, 1131
BlpI GCTNAGC 1 cut(s) 1404
BlsI GCNGC 3 cut(s) 411, 994, 1132
Bme1390I CCNGG 4 cut(s) 188, 329, 1060, 1665
Bme18I GGWCC 2 cut(s) 544, 1199
BmeT110I CYCGRG 2 cut(s) 261, 912
BmgT120I GGNCC 3 cut(s) 544, 1022, 1199
BmiI GGNNCC 5 cut(s) 293, 705, 891, 1065, 1493
BmrFI CCNGG 4 cut(s) 188, 329, 1060, 1665
BmrI ACTGGG 1 cut(s) 1029
BmsI GCATC 1 cut(s) 514
BmuI ACTGGG 1 cut(s) 1029
BpiI GAAGAC 1 cut(s) 1314
BpmI CTGGAG 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 558
Bpu1102I GCTNAGC 1 cut(s) 1404
BpuEI CTTGAG 1 cut(s) 1383
BpuMI CCSGG 1 cut(s) 1060
BsaJI CCNNGG 5 cut(s) 168, 911, 1013, 1059, 1663
BsaWI WCCGGW 1 cut(s) 546
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 1019
Bse118I RCCGGY 2 cut(s) 68, 796
Bse1I ACTGG 4 cut(s) 12, 1024, 1214, 1397
Bse3DI GCAATG 3 cut(s) 162, 906, 1524
BseAI TCCGGA 1 cut(s) 546
BseBI CCWGG 3 cut(s) 188, 329, 1665
BseDI CCNNGG 5 cut(s) 168, 911, 1013, 1059, 1663
BseGI GGATG 5 cut(s) 662, 940, 1009, 1108, 1493
BseLI CCNNNNNNNGG 2 cut(s) 198, 1019
BseMI GCAATG 3 cut(s) 162, 906, 1524
BseMII CTCAG 5 cut(s) 127, 141, 170, 1347, 1418
BseNI ACTGG 4 cut(s) 12, 1024, 1214, 1397
BseRI GAGGAG 2 cut(s) 397, 1058
BseSI GKGCMC 1 cut(s) 1513
BseXI GCAGC 3 cut(s) 421, 1004, 1117
BsgI GTGCAG 2 cut(s) 1238, 1572
Bsh1236I CGCG 1 cut(s) 1206
BshFI GGCC 3 cut(s) 191, 1024, 1396
BshNI GGYRCC 1 cut(s) 1063
BsiHKCI CYCGRG 2 cut(s) 261, 912
BsiSI CCGG 4 cut(s) 69, 547, 797, 1059
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 198, 1019
BsmAI GTCTC 2 cut(s) 487, 1595
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 3 cut(s) 191, 1024, 1396
BsoBI CYCGRG 2 cut(s) 261, 912
Bsp1286I GDGCHC 1 cut(s) 1513
Bsp13I TCCGGA 1 cut(s) 546
Bsp1720I GCTNAGC 1 cut(s) 1404
BspACI CCGC 3 cut(s) 29, 1513, 1522
BspANI GGCC 3 cut(s) 191, 1024, 1396
BspCNI CTCAG 5 cut(s) 126, 142, 171, 1348, 1417
BspEI TCCGGA 1 cut(s) 546
BspFNI CGCG 1 cut(s) 1206
BspHI TCATGA 1 cut(s) 1167
BspLI GGNNCC 5 cut(s) 293, 705, 891, 1065, 1493
BspPI GGATC 5 cut(s) 330, 823, 1014, 1159, 1719
BspQI GCTCTTC 1 cut(s) 811
BspT107I GGYRCC 1 cut(s) 1063
BsrDI GCAATG 3 cut(s) 162, 906, 1524
BsrFI RCCGGY 2 cut(s) 68, 796
BsrI ACTGG 4 cut(s) 12, 1024, 1214, 1397
BssAI RCCGGY 2 cut(s) 68, 796
BssECI CCNNGG 5 cut(s) 168, 911, 1013, 1059, 1663
BssT1I CCWWGG 1 cut(s) 1013
Bst2UI CCWGG 3 cut(s) 188, 329, 1665
Bst4CI ACNGT 4 cut(s) 340, 349, 1075, 1313
Bst6I CTCTTC 4 cut(s) 682, 811, 850, 1604
BstC8I GCNNGC 6 cut(s) 633, 1091, 1275, 1513, 1531, 1535
BstF5I GGATG 5 cut(s) 662, 940, 1009, 1108, 1493
BstFNI CGCG 1 cut(s) 1206
BstHHI GCGC 1 cut(s) 1208
BstMAI GTCTC 2 cut(s) 487, 1595
BstMWI GCNNNNNNNGC 5 cut(s) 17, 1393, 1521, 1530, 1652
BstNI CCWGG 3 cut(s) 188, 329, 1665
BstNSI RCATGY 2 cut(s) 377, 1277
BstSCI CCNGG 4 cut(s) 186, 327, 1058, 1663
BstSFI CTRYAG 1 cut(s) 576
BstSLI GKGCMC 1 cut(s) 1513
BstUI CGCG 1 cut(s) 1206
BstV1I GCAGC 3 cut(s) 421, 1004, 1117
BstV2I GAAGAC 1 cut(s) 1314
BstX2I RGATCY 2 cut(s) 322, 815
BstXI CCANNNNNNTGG 1 cut(s) 1078
BstYI RGATCY 2 cut(s) 322, 815
BsuRI GGCC 3 cut(s) 191, 1024, 1396
BtsCI GGATG 5 cut(s) 662, 940, 1009, 1108, 1493
BtsIMutI CAGTG 5 cut(s) 19, 121, 936, 1221, 1318
Cac8I GCNNGC 6 cut(s) 633, 1091, 1275, 1513, 1531, 1535
CaiI CAGNNNCTG 2 cut(s) 223, 496
CciI TCATGA 1 cut(s) 1167
CfoI GCGC 1 cut(s) 1208
Cfr10I RCCGGY 2 cut(s) 68, 796
Cfr13I GGNCC 3 cut(s) 544, 1022, 1199
Csp6I GTAC 3 cut(s) 957, 1029, 1226
CviQI GTAC 3 cut(s) 957, 1029, 1226
DraI TTTAAA 1 cut(s) 612
Eam1104I CTCTTC 4 cut(s) 682, 811, 850, 1604
EarI CTCTTC 4 cut(s) 682, 811, 850, 1604
Eco130I CCWWGG 1 cut(s) 1013
Eco147I AGGCCT 1 cut(s) 191
Eco47I GGWCC 2 cut(s) 544, 1199
Eco57I CTGAAG 3 cut(s) 792, 875, 1142
Eco88I CYCGRG 2 cut(s) 261, 912
EcoRII CCWGG 3 cut(s) 186, 327, 1663
EcoT14I CCWWGG 1 cut(s) 1013
ErhI CCWWGG 1 cut(s) 1013
FaqI GGGAC 1 cut(s) 284
FauI CCCGC 1 cut(s) 1520
FbaI TGATCA 1 cut(s) 1336
Fnu4HI GCNGC 3 cut(s) 410, 993, 1131
FokI GGATG 5 cut(s) 669, 947, 996, 1095, 1500
Fsp4HI GCNGC 3 cut(s) 410, 993, 1131
FspBI CTAG 2 cut(s) 249, 779
GlaI GCGC 1 cut(s) 1207
GluI GCNGC 3 cut(s) 410, 993, 1131
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 3 cut(s) 191, 1024, 1396
HapII CCGG 4 cut(s) 69, 547, 797, 1059
HhaI GCGC 1 cut(s) 1208
Hin6I GCGC 1 cut(s) 1206
HinP1I GCGC 1 cut(s) 1206
HindIII AAGCTT 1 cut(s) 1677
HpaII CCGG 4 cut(s) 69, 547, 797, 1059
HphI GGTGA 2 cut(s) 104, 950
Hpy188III TCNNGA 6 cut(s) 455, 476, 547, 1112, 1168, 1688
HpyAV CCTTC 7 cut(s) 227, 577, 935, 946, 965, 1042, 1109
HpyCH4III ACNGT 4 cut(s) 340, 349, 1075, 1313
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 1393, 1521, 1530, 1652
HspAI GCGC 1 cut(s) 1206
Kpn2I TCCGGA 1 cut(s) 546
Ksp22I TGATCA 1 cut(s) 1336
LguI GCTCTTC 1 cut(s) 811
LmnI GCTCC 1 cut(s) 824
Lsp1109I GCAGC 3 cut(s) 421, 1004, 1117
LweI GCATC 1 cut(s) 514
MaeI CTAG 2 cut(s) 249, 779
MaeIII GTNAC 5 cut(s) 92, 145, 280, 518, 1313
MfeI CAATTG 2 cut(s) 600, 681
MflI RGATCY 2 cut(s) 322, 815
MhlI GDGCHC 1 cut(s) 1513
MlyI GAGTC 4 cut(s) 89, 161, 836, 1557
MmeI TCCRAC 1 cut(s) 946
MroI TCCGGA 1 cut(s) 546
MseI TTAA 6 cut(s) 501, 611, 747, 873, 1104, 1431
MslI CAYNNNNRTG 3 cut(s) 1076, 1504, 1722
MspI CCGG 4 cut(s) 69, 547, 797, 1059
MspR9I CCNGG 4 cut(s) 188, 329, 1060, 1665
MunI CAATTG 2 cut(s) 600, 681
MvaI CCWGG 3 cut(s) 188, 329, 1665
MvnI CGCG 1 cut(s) 1206
MwoI GCNNNNNNNGC 5 cut(s) 17, 1393, 1521, 1530, 1652
NciI CCSGG 1 cut(s) 1060
NlaIV GGNNCC 5 cut(s) 293, 705, 891, 1065, 1493
NmuCI GTSAC 3 cut(s) 92, 145, 1313
NspI RCATGY 2 cut(s) 377, 1277
PaeI GCATGC 1 cut(s) 1277
PagI TCATGA 1 cut(s) 1167
PceI AGGCCT 1 cut(s) 191
PciSI GCTCTTC 1 cut(s) 811
PfeI GAWTC 8 cut(s) 41, 133, 158, 183, 1124, 1587, 1616, 1691
PflFI GACNNNGTC 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 1019
PkrI GCNGC 3 cut(s) 411, 994, 1132
PleI GAGTC 4 cut(s) 89, 160, 836, 1557
PpsI GAGTC 4 cut(s) 89, 160, 836, 1557
PshBI ATTAAT 1 cut(s) 501
PsiI TTATAA 1 cut(s) 1038
Psp6I CCWGG 3 cut(s) 186, 327, 1663
PspGI CCWGG 3 cut(s) 186, 327, 1663
PspN4I GGNNCC 5 cut(s) 293, 705, 891, 1065, 1493
PspPI GGNCC 3 cut(s) 544, 1022, 1199
PstNI CAGNNNCTG 2 cut(s) 223, 496
PsuI RGATCY 2 cut(s) 322, 815
PsyI GACNNNGTC 1 cut(s) 151
RsaI GTAC 3 cut(s) 958, 1030, 1227
RsaNI GTAC 3 cut(s) 957, 1029, 1226
RseI CAYNNNNRTG 3 cut(s) 1076, 1504, 1722
SapI GCTCTTC 1 cut(s) 811
SaqAI TTAA 6 cut(s) 501, 611, 747, 873, 1104, 1431
SatI GCNGC 3 cut(s) 410, 993, 1131
Sau96I GGNCC 3 cut(s) 544, 1022, 1199
SchI GAGTC 4 cut(s) 89, 161, 836, 1557
ScrFI CCNGG 4 cut(s) 188, 329, 1060, 1665
SduI GDGCHC 1 cut(s) 1513
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 576
SgrAI CRCCGGYG 1 cut(s) 68
SinI GGWCC 2 cut(s) 544, 1199
SmiMI CAYNNNNRTG 3 cut(s) 1076, 1504, 1722
SmlI CTYRAG 1 cut(s) 1398
SmoI CTYRAG 1 cut(s) 1398
SphI GCATGC 1 cut(s) 1277
SseBI AGGCCT 1 cut(s) 191
SsiI CCGC 3 cut(s) 29, 1513, 1522
SspMI CTAG 2 cut(s) 249, 779
StuI AGGCCT 1 cut(s) 191
StyD4I CCNGG 4 cut(s) 186, 327, 1058, 1663
StyI CCWWGG 1 cut(s) 1013
TaaI ACNGT 4 cut(s) 340, 349, 1075, 1313
TaqI TCGA 3 cut(s) 194, 1455, 1689
TfiI GAWTC 8 cut(s) 41, 133, 158, 183, 1124, 1587, 1616, 1691
Tru1I TTAA 6 cut(s) 501, 611, 747, 873, 1104, 1431
Tru9I TTAA 6 cut(s) 501, 611, 747, 873, 1104, 1431
TscAI CASTG 5 cut(s) 19, 121, 936, 1221, 1318
TseFI GTSAC 3 cut(s) 92, 145, 1313
TseI GCWGC 3 cut(s) 409, 992, 1130
Tsp45I GTSAC 3 cut(s) 92, 145, 1313
TspRI CASTG 5 cut(s) 19, 121, 936, 1221, 1318
Tth111I GACNNNGTC 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 1019
VpaK11BI GGWCC 2 cut(s) 544, 1199
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 4 cut(s) 613, 731, 1233, 1360
XceI RCATGY 2 cut(s) 377, 1277
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XspI CTAG 2 cut(s) 249, 779
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.