Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002728

Physical Location & Seq

Genomic Coordinates Reverse (-)

52491956 .. 52494535

Gene Structure 2580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG401100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1617 bp

ATGATTGTTGATATACATGGTACATTTCATGATTCAGTTTGGGCCTCAGAGTTTCATGAATGGGCCATGTGGCCACCGCAGCCCAGTTCTTTTGTCTTCTTCCTTTCTCAACCCTTGAATTTGGCGCCCAACAGTTCTTTCCCTCTCGGGGTTTTGTTCTTCGATGGGGTAATTGATGGGAACCTATTGCATTTGGTACTAAGGCTTTCGGATCTCCAGGCTATTACTGTTAGGACTGTGTGTGGTAAGGAGTTTGAGTTCCATGTTGAGAGGAGTACGAATGTGGGTTATCTGAAGCAGCAGATTGCTAAGAAAGGGAAGGGGTCTGTTGATGTCGAAGATCAGGAACTCATATTTGATGGTGAAGAGCTTGAAGATCAGAGACTGATTAATGATATATGTACAAGTAACGATGCTGTTATTCATTTGCTGGTCCGGAAATCTGCTGAGGTTGGAGCTAAACCTATAGAGAAGGATTTTCCAGAGTCATTTGAGGCTTTAAATTTGAATGAGAAGAAGCCTGCCTTAGCCAGAGAAATTGTGGGATGTCAAGCTTTAGAGAGGAAAGCAATTGGAAGAGAACTCGTTTTGGAACCTCTAATTGGAAATCCTGACATTGAATTTTCGTTAGGGATTAAGAAGTTGATTTCCTCCACTTTGGATGGGCTAGAGAGAGGCTGTCAGCCAGTTAGCTCTTCGGAGGGAACTGGTGGAACTTATTTCATGCCAGACTCTTCTGGTCTCAAGTATGTTTCTGTCTTTAAGCCAATCGACGAGGAACCGATGGCAATGAATAACCCTCGGGGATTGACCTTGTCATTGGATGGTGAAGGTTTGAAGAAAGGTACAAGGGTCGGAGAAGGGGCATTGAGGGAAGTTGCAGCTTACATTTTGGATCATCCAAGGACCGGACCTCGTACATTCTATAATGAGGAGAAGGGCTTCGCCGGGGTGCCACCCACAATTATGGTCAAGTGCTTGCACAAAGGATTTAATCATCCAGAAGGTTATGATTCTGCTGCCAAGAACATGAAGATCGGATCACTTCAGATGTTCATGAAAAACAATGGAAGTTGTGAGGATATTGGTCCTGGTGCTTTTCCAGTGCACGAGGTACATAAAATTTCTATGCTGGACATGAGGTTGGCAAATGCAGACAGGCATGCTGGAAACATACTGATGAGCAGACAGAGTGAAGACAGTCAGATTGTGCTTATTCCGATTGATCATGGCTATTGTTTGCCTGAGAATTTTGGAGAGTGCACATTCGACTGGCTTTCCTGGCCTCAAGCTAAGCAACATTATCAGTCCGAATCTCTGAACTACATCCAATCACTAGATGCAGAAAAAGATATTGACCTTTTAAGGTTCTTTGGATGGAACCTACCACCTGAATGTGCCCGCACTCTCCGCATTGCCACCATGCTACTAAAAAAAGGTGCAGAGAGAGGACTCACTCCCTTTGACATCGGAAGCATCATGTGTTTGGAGACTTCGAAGAAAGAACCCGCTATCGAACTGATCATTAAAGAAGCAAAAGAACTTCCGGGAACAAGTGAAGCTTCATTTCTAGAATCTTTGTCATCAATCATGGATCGACACCTGGATGAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009909 GO:0009987 GO:0010033 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0033993 GO:0035091 GO:0042221 GO:0042579 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0097305 GO:1901700 GO:1902074 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko03320 map03320

Pfam Domains

Protein Families

PI3_PI4_kinase ubiquitin

Protein Analysis

538

Amino Acids

59.8

Weight (kDa)

5.12

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ubiquitin	PF00240	75 - 147	2.3e-13	Ubiquitin family
Rad60-SLD	PF11976	75 - 145	1.8e-08	Ubiquitin-2 like Rad60 SUMO-like
PI3_PI4_kinase	PF00454	236 - 489	5.5e-48	Phosphatidylinositol 3- and 4-kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24240 AT5G24240
fragaria_vesca	FvH4_5g04790 FvH4_7g31640 FvH4_7g31640
malus_domestica	MD06G1109000.v1.1 MD14G1129900.v1.1
prunus_persica	Prupe.2G310500_v2.0.a1 Prupe.2G310500_v2.0.a1 Prupe.5G121800_v2.0.a1
pyrus_communis	pycom06g10230
rosa_chinensis	RchiOBHm_Chr1g0380721 RchiOBHm_Chr7g0194461
rosa_laevigata	RLG00000004199 RLG00000026274
rosa_multiflora	Rmu_co8342205.1_g000001 Rmu_co8403341.1_g000001 Rmu_sc0001637.1_g000011 Rmu_sc0006267.1_g000003 Rmu_sc0034746.1_g000002 Rmu_ssc0000261.1_g000026
rosa_roxburghii	Rroxscaffold_3G00261340 Rroxscaffold_4G00279080
rosa_rugosa	Rorug01G0423900 Rorug07G0015800
rosa_samantha	Rh1AG448000 Rh1BG401100 Rh1BG403500 Rh1CG415500 Rh1CG417800 Rh1DG431300 Rh1DG433800 Rh7AG143100 Rh7BG143600 Rh7CG147400 Rh7DG145000
rosa_wichuraiana	Rw0G005880 Rw1G039000 Rw7G012250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	124, 952
AccIII	TCCGGA	1 cut(s)	435
AciI	CCGC	4 cut(s)	77, 1402, 1411, 1509
AclWI	GGATC	4 cut(s)	219, 903, 1048, 1602
AcoI	YGGCCR	1 cut(s)	71
AcsI	RAATTY	5 cut(s)	118, 502, 620, 1122, 1249
AcuI	CTGAAG	2 cut(s)	314, 1031
AcyI	GRCGYC	1 cut(s)	125
AfaI	GTAC	7 cut(s)	22, 198, 277, 403, 847, 919, 1116
AfiI	CCNNNNNNNGG	3 cut(s)	148, 602, 908
AgsI	TTSAA	5 cut(s)	118, 374, 508, 620, 838
AjnI	CCWGG	4 cut(s)	216, 1090, 1280, 1602
AjuI	GAANNNNNNNTTGG	4 cut(s)	122, 154, 585, 617
AloI	GAACNNNNNNTCC	2 cut(s)	242, 274
AluBI	AGCT	8 cut(s)	370, 458, 554, 693, 884, 1292, 1562, 1612
AluI	AGCT	8 cut(s)	370, 458, 554, 693, 884, 1292, 1562, 1612
Alw21I	GWGCWC	2 cut(s)	1110, 1265
Alw26I	GTCTC	3 cut(s)	376, 746, 1484
Alw44I	GTGCAC	2 cut(s)	1106, 1261
AlwI	GGATC	4 cut(s)	219, 903, 1048, 1602
AlwNI	CAGNNNCTG	1 cut(s)	385
Ama87I	CYCGRG	2 cut(s)	146, 801
Aor13HI	TCCGGA	1 cut(s)	435
AoxI	GGCC	4 cut(s)	42, 63, 71, 1283
ApaLI	GTGCAC	2 cut(s)	1106, 1261
ApeKI	GCWGC	4 cut(s)	79, 298, 881, 1019
ApoI	RAATTY	5 cut(s)	118, 502, 620, 1122, 1249
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	1 cut(s)	941
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	6 cut(s)	42, 63, 433, 906, 911, 1088
AsuC2I	CCSGG	2 cut(s)	949, 1548
AsuHPI	GGTGA	2 cut(s)	374, 839
AsuII	TTCGAA	1 cut(s)	1496
AvaI	CYCGRG	2 cut(s)	146, 801
AvaII	GGWCC	4 cut(s)	433, 906, 911, 1088
BaeGI	GKGCMC	3 cut(s)	1110, 1265, 1402
BaeI	ACNNNNGTAYC	2 cut(s)	837, 870
BalI	TGGCCA	1 cut(s)	73
BanI	GGYRCC	2 cut(s)	124, 952
BauI	CACGAG	1 cut(s)	1109
BbsI	GAAGAC	2 cut(s)	88, 1203
Bbv12I	GWGCWC	2 cut(s)	1110, 1265
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	4 cut(s)	91, 310, 893, 1006
BccI	CCATC	7 cut(s)	158, 170, 353, 656, 778, 818, 1371
BciT130I	CCWGG	4 cut(s)	218, 1092, 1282, 1604
BclI	TGATCA	2 cut(s)	1225, 1521
BcnI	CCSGG	2 cut(s)	949, 1548
BcoDI	GTCTC	3 cut(s)	376, 746, 1484
BfaI	CTAG	3 cut(s)	668, 1337, 1571
BfmI	CTRYAG	1 cut(s)	465
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	4 cut(s)	80, 299, 882, 1020
BlpI	GCTNAGC	1 cut(s)	1293
BlsI	GCNGC	4 cut(s)	81, 300, 883, 1021
Bme1390I	CCNGG	6 cut(s)	218, 949, 1092, 1282, 1548, 1604
Bme18I	GGWCC	4 cut(s)	433, 906, 911, 1088
BmeT110I	CYCGRG	2 cut(s)	146, 801
BmgT120I	GGNCC	6 cut(s)	42, 63, 433, 906, 911, 1088
BmiI	GGNNCC	6 cut(s)	126, 182, 594, 780, 954, 1382
BmrFI	CCNGG	6 cut(s)	218, 949, 1092, 1282, 1548, 1604
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	3 cut(s)	403, 1330, 1485
BmuI	ACTGGG	1 cut(s)	78
BpiI	GAAGAC	2 cut(s)	88, 1203
BpmI	CTGGAG	1 cut(s)	200
Bpu10I	CCTNAGC	2 cut(s)	447, 526
Bpu1102I	GCTNAGC	1 cut(s)	1293
Bpu14I	TTCGAA	1 cut(s)	1496
BpuEI	CTTGAG	2 cut(s)	728, 1272
BpuMI	CCSGG	2 cut(s)	949, 1548
BsaHI	GRCGYC	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	746
BsaJI	CCNNGG	3 cut(s)	800, 902, 948
BsaWI	WCCGGW	2 cut(s)	435, 908
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 602, 908
Bse1I	ACTGG	5 cut(s)	84, 686, 712, 1103, 1277
Bse3DI	GCAATG	2 cut(s)	795, 1413
BseAI	TCCGGA	1 cut(s)	435
BseBI	CCWGG	4 cut(s)	218, 1092, 1282, 1604
BseDI	CCNNGG	3 cut(s)	800, 902, 948
BseGI	GGATG	8 cut(s)	551, 667, 829, 898, 997, 1326, 1382, 1612
BseLI	CCNNNNNNNGG	3 cut(s)	148, 602, 908
BseMI	GCAATG	2 cut(s)	795, 1413
BseMII	CTCAG	3 cut(s)	60, 438, 1236
BseNI	ACTGG	5 cut(s)	84, 686, 712, 1103, 1277
BseRI	GAGGAG	2 cut(s)	286, 947
BseSI	GKGCMC	3 cut(s)	1110, 1265, 1402
BseXI	GCAGC	4 cut(s)	91, 310, 893, 1006
BsgI	GTGCAG	1 cut(s)	1461
BshFI	GGCC	4 cut(s)	44, 65, 73, 1285
BshNI	GGYRCC	2 cut(s)	124, 952
BsiHKAI	GWGCWC	2 cut(s)	1110, 1265
BsiHKCI	CYCGRG	2 cut(s)	146, 801
BsiSI	CCGG	4 cut(s)	436, 909, 948, 1547
BslI	CCNNNNNNNGG	3 cut(s)	148, 602, 908
BsmAI	GTCTC	3 cut(s)	376, 746, 1484
BsnI	GGCC	4 cut(s)	44, 65, 73, 1285
Bso31I	GGTCTC	1 cut(s)	746
BsoBI	CYCGRG	2 cut(s)	146, 801
Bsp119I	TTCGAA	1 cut(s)	1496
Bsp1286I	GDGCHC	3 cut(s)	1110, 1265, 1402
Bsp13I	TCCGGA	1 cut(s)	435
Bsp1407I	TGTACA	1 cut(s)	401
Bsp143I	GATC	9 cut(s)	211, 340, 376, 895, 1035, 1040, 1225, 1521, 1594
Bsp1720I	GCTNAGC	1 cut(s)	1293
BspACI	CCGC	4 cut(s)	77, 1402, 1411, 1509
BspANI	GGCC	4 cut(s)	44, 65, 73, 1285
BspCNI	CTCAG	3 cut(s)	59, 439, 1237
BspEI	TCCGGA	1 cut(s)	435
BspHI	TCATGA	3 cut(s)	28, 55, 1056
BspLI	GGNNCC	6 cut(s)	126, 182, 594, 780, 954, 1382
BspPI	GGATC	4 cut(s)	219, 903, 1048, 1602
BspQI	GCTCTTC	2 cut(s)	360, 700
BspT104I	TTCGAA	1 cut(s)	1496
BspT107I	GGYRCC	2 cut(s)	124, 952
BspTNI	GGTCTC	1 cut(s)	746
BsrDI	GCAATG	2 cut(s)	795, 1413
BsrGI	TGTACA	1 cut(s)	401
BsrI	ACTGG	5 cut(s)	84, 686, 712, 1103, 1277
BssECI	CCNNGG	3 cut(s)	800, 902, 948
BssMI	GATC	9 cut(s)	211, 340, 376, 895, 1035, 1040, 1225, 1521, 1594
BssNI	GRCGYC	1 cut(s)	125
BssSI	CACGAG	1 cut(s)	1109
BssT1I	CCWWGG	1 cut(s)	902
Bst2BI	CACGAG	1 cut(s)	1109
Bst2UI	CCWGG	4 cut(s)	218, 1092, 1282, 1604
Bst4CI	ACNGT	4 cut(s)	134, 229, 238, 1202
Bst6I	CTCTTC	4 cut(s)	360, 571, 700, 739
BstACI	GRCGYC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	401
BstBI	TTCGAA	1 cut(s)	1496
BstC8I	GCNNGC	4 cut(s)	522, 980, 1164, 1402
BstDEI	CTNAG	7 cut(s)	46, 200, 309, 447, 526, 1245, 1293
BstF5I	GGATG	8 cut(s)	551, 667, 829, 898, 997, 1326, 1382, 1612
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstKTI	GATC	9 cut(s)	214, 343, 379, 898, 1038, 1043, 1228, 1524, 1597
BstMAI	GTCTC	3 cut(s)	376, 746, 1484
BstMBI	GATC	9 cut(s)	211, 340, 376, 895, 1035, 1040, 1225, 1521, 1594
BstMWI	GCNNNNNNNGC	3 cut(s)	79, 1282, 1410
BstNI	CCWGG	4 cut(s)	218, 1092, 1282, 1604
BstNSI	RCATGY	1 cut(s)	1166
BstSCI	CCNGG	6 cut(s)	216, 947, 1090, 1280, 1546, 1602
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	3 cut(s)	1110, 1265, 1402
BstV1I	GCAGC	4 cut(s)	91, 310, 893, 1006
BstV2I	GAAGAC	2 cut(s)	88, 1203
BstX2I	RGATCY	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	967
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	4 cut(s)	44, 65, 73, 1285
BtsCI	GGATG	8 cut(s)	551, 667, 829, 898, 997, 1326, 1382, 1612
BtsIMutI	CAGTG	1 cut(s)	1110
Cac8I	GCNNGC	4 cut(s)	522, 980, 1164, 1402
CaiI	CAGNNNCTG	1 cut(s)	385
CciI	TCATGA	3 cut(s)	28, 55, 1056
CfoI	GCGC	1 cut(s)	127
Cfr13I	GGNCC	6 cut(s)	42, 63, 433, 906, 911, 1088
Csp6I	GTAC	7 cut(s)	21, 197, 276, 402, 846, 918, 1115
CviQI	GTAC	7 cut(s)	21, 197, 276, 402, 846, 918, 1115
DdeI	CTNAG	7 cut(s)	46, 200, 309, 447, 526, 1245, 1293
DinI	GGCGCC	1 cut(s)	126
DpnI	GATC	9 cut(s)	213, 342, 378, 897, 1037, 1042, 1227, 1523, 1596
DpnII	GATC	9 cut(s)	211, 340, 376, 895, 1035, 1040, 1225, 1521, 1594
DraI	TTTAAA	1 cut(s)	501
EaeI	YGGCCR	1 cut(s)	71
Eam1104I	CTCTTC	4 cut(s)	360, 571, 700, 739
EarI	CTCTTC	4 cut(s)	360, 571, 700, 739
Eco130I	CCWWGG	1 cut(s)	902
Eco31I	GGTCTC	1 cut(s)	746
Eco47I	GGWCC	4 cut(s)	433, 906, 911, 1088
Eco57I	CTGAAG	2 cut(s)	314, 1031
Eco88I	CYCGRG	2 cut(s)	146, 801
EcoRII	CCWGG	4 cut(s)	216, 1090, 1280, 1602
EcoT14I	CCWWGG	1 cut(s)	902
EgeI	GGCGCC	1 cut(s)	126
EheI	GGCGCC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	902
FalI	AAGNNNNNCTT	4 cut(s)	509, 541, 1546, 1578
FauI	CCCGC	2 cut(s)	1409, 1516
FbaI	TGATCA	2 cut(s)	1225, 1521
Fnu4HI	GCNGC	4 cut(s)	80, 299, 882, 1020
FokI	GGATG	7 cut(s)	558, 674, 836, 885, 984, 1313, 1389
Fsp4HI	GCNGC	4 cut(s)	80, 299, 882, 1020
FspBI	CTAG	3 cut(s)	668, 1337, 1571
GlaI	GCGC	1 cut(s)	126
GluI	GCNGC	4 cut(s)	80, 299, 882, 1020
GsuI	CTGGAG	1 cut(s)	200
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	4 cut(s)	44, 65, 73, 1285
HapII	CCGG	4 cut(s)	436, 909, 948, 1547
HhaI	GCGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HindIII	AAGCTT	2 cut(s)	552, 1560
HinfI	GANTC	7 cut(s)	32, 485, 731, 1013, 1313, 1452, 1574
HpaII	CCGG	4 cut(s)	436, 909, 948, 1547
HphI	GGTGA	2 cut(s)	374, 839
Hpy166II	GTNNAC	2 cut(s)	1108, 1263
Hpy188III	TCNNGA	9 cut(s)	29, 56, 344, 436, 482, 611, 1001, 1057, 1571
Hpy8I	GTNNAC	2 cut(s)	1108, 1263
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	6 cut(s)	313, 466, 824, 854, 931, 998
HpyCH4III	ACNGT	4 cut(s)	134, 229, 238, 1202
HpyCH4V	TGCA	8 cut(s)	190, 881, 982, 1108, 1154, 1263, 1343, 1442
HpyF10VI	GCNNNNNNNGC	3 cut(s)	79, 1282, 1410
HpyF3I	CTNAG	7 cut(s)	46, 200, 309, 447, 526, 1245, 1293
Hsp92I	GRCGYC	1 cut(s)	125
HspAI	GCGC	1 cut(s)	125
KasI	GGCGCC	1 cut(s)	124
Kpn2I	TCCGGA	1 cut(s)	435
Ksp22I	TGATCA	2 cut(s)	1225, 1521
Kzo9I	GATC	9 cut(s)	211, 340, 376, 895, 1035, 1040, 1225, 1521, 1594
LguI	GCTCTTC	2 cut(s)	360, 700
LmnI	GCTCC	1 cut(s)	455
Lsp1109I	GCAGC	4 cut(s)	91, 310, 893, 1006
LweI	GCATC	3 cut(s)	403, 1330, 1485
MaeI	CTAG	3 cut(s)	668, 1337, 1571
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	9 cut(s)	213, 342, 378, 897, 1037, 1042, 1227, 1523, 1596
MboI	GATC	9 cut(s)	211, 340, 376, 895, 1035, 1040, 1225, 1521, 1594
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	3 cut(s)	1110, 1265, 1402
MlsI	TGGCCA	1 cut(s)	73
MluNI	TGGCCA	1 cut(s)	73
Mly113I	GGCGCC	1 cut(s)	125
MlyI	GAGTC	3 cut(s)	494, 725, 1446
MmeI	TCCRAC	2 cut(s)	433, 835
Mox20I	TGGCCA	1 cut(s)	73
MroI	TCCGGA	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	941
MscI	TGGCCA	1 cut(s)	73
MseI	TTAA	8 cut(s)	390, 500, 636, 762, 993, 1364, 1527, 1615
MslI	CAYNNNNRTG	4 cut(s)	965, 1178, 1393, 1605
Msp20I	TGGCCA	1 cut(s)	73
MspI	CCGG	4 cut(s)	436, 909, 948, 1547
MspR9I	CCNGG	6 cut(s)	218, 949, 1092, 1282, 1548, 1604
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	4 cut(s)	218, 1092, 1282, 1604
MwoI	GCNNNNNNNGC	3 cut(s)	79, 1282, 1410
NarI	GGCGCC	1 cut(s)	125
NciI	CCSGG	2 cut(s)	949, 1548
NdeII	GATC	9 cut(s)	211, 340, 376, 895, 1035, 1040, 1225, 1521, 1594
NlaIV	GGNNCC	6 cut(s)	126, 182, 594, 780, 954, 1382
NspI	RCATGY	1 cut(s)	1166
NspV	TTCGAA	1 cut(s)	1496
PaeI	GCATGC	1 cut(s)	1166
PagI	TCATGA	3 cut(s)	28, 55, 1056
PciSI	GCTCTTC	2 cut(s)	360, 700
PdmI	GAANNNNTTC	1 cut(s)	941
PfeI	GAWTC	4 cut(s)	32, 1013, 1313, 1574
PflFI	GACNNNGTC	1 cut(s)	814
PfoI	TCCNGGA	1 cut(s)	1546
PkrI	GCNGC	4 cut(s)	81, 300, 883, 1021
PleI	GAGTC	3 cut(s)	493, 725, 1446
PluTI	GGCGCC	1 cut(s)	128
PpsI	GAGTC	3 cut(s)	493, 725, 1446
PshBI	ATTAAT	1 cut(s)	390
Psp6I	CCWGG	4 cut(s)	216, 1090, 1280, 1602
PspGI	CCWGG	4 cut(s)	216, 1090, 1280, 1602
PspN4I	GGNNCC	6 cut(s)	126, 182, 594, 780, 954, 1382
PspPI	GGNCC	6 cut(s)	42, 63, 433, 906, 911, 1088
PstNI	CAGNNNCTG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	814
RsaI	GTAC	7 cut(s)	22, 198, 277, 403, 847, 919, 1116
RsaNI	GTAC	7 cut(s)	21, 197, 276, 402, 846, 918, 1115
RseI	CAYNNNNRTG	4 cut(s)	965, 1178, 1393, 1605
SapI	GCTCTTC	2 cut(s)	360, 700
SaqAI	TTAA	8 cut(s)	390, 500, 636, 762, 993, 1364, 1527, 1615
SatI	GCNGC	4 cut(s)	80, 299, 882, 1020
Sau3AI	GATC	9 cut(s)	211, 340, 376, 895, 1035, 1040, 1225, 1521, 1594
Sau96I	GGNCC	6 cut(s)	42, 63, 433, 906, 911, 1088
SchI	GAGTC	3 cut(s)	494, 725, 1446
ScrFI	CCNGG	6 cut(s)	218, 949, 1092, 1282, 1548, 1604
SduI	GDGCHC	3 cut(s)	1110, 1265, 1402
SfaNI	GCATC	3 cut(s)	403, 1330, 1485
SfcI	CTRYAG	1 cut(s)	465
SfoI	GGCGCC	1 cut(s)	126
SfuI	TTCGAA	1 cut(s)	1496
SinI	GGWCC	4 cut(s)	433, 906, 911, 1088
SmiMI	CAYNNNNRTG	4 cut(s)	965, 1178, 1393, 1605
SmlI	CTYRAG	2 cut(s)	743, 1287
SmoI	CTYRAG	2 cut(s)	743, 1287
SphI	GCATGC	1 cut(s)	1166
SsiI	CCGC	4 cut(s)	77, 1402, 1411, 1509
SspDI	GGCGCC	1 cut(s)	124
SspMI	CTAG	3 cut(s)	668, 1337, 1571
StyD4I	CCNGG	6 cut(s)	216, 947, 1090, 1280, 1546, 1602
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	4 cut(s)	134, 229, 238, 1202
TaqI	TCGA	7 cut(s)	162, 336, 771, 1269, 1496, 1515, 1597
TatI	WGTACW	1 cut(s)	401
TfiI	GAWTC	4 cut(s)	32, 1013, 1313, 1574
Tru1I	TTAA	8 cut(s)	390, 500, 636, 762, 993, 1364, 1527, 1615
Tru9I	TTAA	8 cut(s)	390, 500, 636, 762, 993, 1364, 1527, 1615
TscAI	CASTG	1 cut(s)	1110
TseI	GCWGC	4 cut(s)	79, 298, 881, 1019
TspRI	CASTG	1 cut(s)	1110
Tth111I	GACNNNGTC	1 cut(s)	814
VneI	GTGCAC	2 cut(s)	1106, 1261
VpaK11BI	GGWCC	4 cut(s)	433, 906, 911, 1088
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	5 cut(s)	118, 502, 620, 1122, 1249
XbaI	TCTAGA	1 cut(s)	1570
XceI	RCATGY	1 cut(s)	1166
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	941
XspI	CTAG	3 cut(s)	668, 1337, 1571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.