AT5G24500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012071
Physical Location & Seq
Reverse (-)
8367302 .. 8368937
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24500.1

Sequence Viewer

Length: 1005 bp
ATGCTAAGCTCCATCATCGACGACAAACCTGCCTCCTCCACTTGGCTCAACCGCCTCCGATTAAACAGAGGCCTCACAACCGACGATGACGATGCTTCTGGCAATCCACTTACTCTCGACGACTTTCTCCGCCGCAACCACCACACGGAAATCGCCGCCACTAGTTCCGCTTCCGATTCACCTCCATCTGCTCCAATTCCTTCAGATCCAGAATTAGCTGAAAGTCCATCGGAGGAGCCAGTTCCTGGAGAATGGTACGGCGTGATGAGCGATGTTCTCTTCGAGCTATTCAATTTCAGCGGCTCCTCTAAATCTTCCACAATTCCCGGGAAGAAGAAGTTACCAAGGAAACAATCAAACCCTAGGCATTGCTCTTTAGAGACTCCTGAAGACGTTGTTGTTCCGTTGGTAAATCAGAAAAGCGACGACGCTAATTGTCTCCCTAGTGTTCGTGAATTCGCTACTTCATCGTCGCGTAGTTCATACAATAAGAAACCTCCGGCGCCGGAGATTAGGGAGAGGAGAAGAAGTGTAGTGGAAGGTGATGGTGTGGATGAGGAAGAAGAGAAAGGAGAGAAAGATCTAGTTGGGTTTTCGAGAAGTGAAGTGACCGTGATTGATACTAGCTTTAAGATTTGGAAATCTGAGAAACTTGTTTTCAGGAGGAGAAATGTTTGGAAAGTGAGAGAGAAGAAAGGTAAATCAAGAGTTGTTTCGAAGTTGAAGAAGTTGATGAAGAAGAAGAAGAAGAAAAAGAGGAAATGTGATGATGTTGATGATGATGATGGTGGAATTGCTCGGAAAAAAAGCAAGAAGATGAAGATTTCAACATCAGTTTCAGACAATAATCCACGCTATAACGTCGAAGAGATTCATGATGAACCAGAAAGCAGCAATGTCAGCCGAAGGTTGCTCTCTAAGCCTAGAAAAGAAGGTTCTTTCGGTATACATACAAGCAAGAAGAACAGCGAAGCAGCGGCTCAAGGTTATCGGTCTTTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

37.42

Weight (kDa)

9.36

Isoelectric Point (pI)

57.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24500
fragaria_vesca FvH4_7g32890 FvH4_7g32890
malus_domestica MD01G1228100.v1.1 MD07G1298800.v1.1
prunus_persica Prupe.2G318600_v2.0.a1
pyrus_communis pycom01g23630 pycom07g27120
rosa_chinensis RchiOBHm_Chr1g0382841
rosa_laevigata RLG00000026155
rosa_multiflora Rmu_co8155456.1_g000001 Rmu_sc0003389.1_g000012
rosa_roxburghii Rroxscaffold_4G00277850
rosa_rugosa Rorug01G0436700
rosa_samantha Rh1AG461700 Rh1BG418700 Rh1CG432300 Rh1DG450800
rosa_wichuraiana Rw1G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 502
AccB7I CCANNNNNTGG 1 cut(s) 245
AccI GTMKAC 1 cut(s) 946
AccII CGCG 1 cut(s) 475
AciI CCGC 7 cut(s) 52, 130, 133, 156, 168, 300, 977
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 455
AcuI CTGAAG 2 cut(s) 186, 408
AcyI GRCGYC 1 cut(s) 503
AfaI GTAC 1 cut(s) 257
AfiI CCNNNNNNNGG 3 cut(s) 42, 145, 245
AgsI TTSAA 3 cut(s) 292, 724, 828
AhlI ACTAGT 1 cut(s) 161
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 4 cut(s) 9, 218, 286, 627
AluI AGCT 4 cut(s) 9, 218, 286, 627
Alw26I GTCTC 2 cut(s) 374, 443
AlwI GGATC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 245
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 2 cut(s) 70, 999
ApeKI GCWGC 2 cut(s) 891, 974
ApoI RAATTY 1 cut(s) 455
Asp700I GAANNNNTTC 1 cut(s) 870
AspA2I CCTAGG 1 cut(s) 362
AspLEI GCGC 1 cut(s) 505
AsuC2I CCSGG 2 cut(s) 327, 328
AsuHPI GGTGA 2 cut(s) 171, 554
AsuII TTCGAA 1 cut(s) 716
AvaI CYCGRG 1 cut(s) 326
AvrII CCTAGG 1 cut(s) 362
BanI GGYRCC 1 cut(s) 502
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 2 cut(s) 903, 986
BccI CCATC 5 cut(s) 20, 193, 235, 539, 779
BceAI ACGGC 1 cut(s) 274
BcgI CGANNNNNNTGC 4 cut(s) 11, 45, 74, 108
BciT130I CCWGG 1 cut(s) 246
BcnI CCSGG 2 cut(s) 327, 328
BcoDI GTCTC 2 cut(s) 374, 443
BcuI ACTAGT 1 cut(s) 161
BfaI CTAG 6 cut(s) 162, 363, 444, 584, 624, 924
BfoI RGCGCY 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 37
BglII AGATCT 1 cut(s) 580
BisI GCNGC 6 cut(s) 133, 156, 301, 892, 975, 978
BlnI CCTAGG 1 cut(s) 362
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 6 cut(s) 134, 157, 302, 893, 976, 979
Bme1390I CCNGG 3 cut(s) 246, 327, 328
BmeT110I CYCGRG 1 cut(s) 326
BmiI GGNNCC 3 cut(s) 237, 304, 504
BmrFI CCNGG 3 cut(s) 246, 327, 328
BmsI GCATC 1 cut(s) 82
BpiI GAAGAC 1 cut(s) 396
BpmI CTGGAG 1 cut(s) 267
Bpu1102I GCTNAGC 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 716
BpuEI CTTGAG 1 cut(s) 966
BpuMI CCSGG 2 cut(s) 327, 328
BsaHI GRCGYC 1 cut(s) 503
BsaJI CCNNGG 3 cut(s) 326, 344, 362
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 145, 245
Bse1I ACTGG 1 cut(s) 239
Bse3DI GCAATG 2 cut(s) 367, 901
BseBI CCWGG 1 cut(s) 246
BseDI CCNNGG 3 cut(s) 326, 344, 362
BseGI GGATG 1 cut(s) 559
BseLI CCNNNNNNNGG 3 cut(s) 42, 145, 245
BseMI GCAATG 2 cut(s) 367, 901
BseMII CTCAG 1 cut(s) 636
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 5 cut(s) 25, 248, 295, 535, 679
BseXI GCAGC 2 cut(s) 903, 986
Bsh1236I CGCG 1 cut(s) 475
BshFI GGCC 2 cut(s) 72, 1001
BshNI GGYRCC 1 cut(s) 502
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 3 cut(s) 327, 500, 506
BslI CCNNNNNNNGG 3 cut(s) 42, 145, 245
BsmAI GTCTC 2 cut(s) 374, 443
BsnI GGCC 2 cut(s) 72, 1001
BsoBI CYCGRG 1 cut(s) 326
Bsp119I TTCGAA 1 cut(s) 716
Bsp143I GATC 2 cut(s) 205, 580
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 7 cut(s) 52, 130, 133, 156, 168, 300, 977
BspANI GGCC 2 cut(s) 72, 1001
BspCNI CTCAG 1 cut(s) 637
BspFNI CGCG 1 cut(s) 475
BspHI TCATGA 1 cut(s) 874
BspLI GGNNCC 3 cut(s) 237, 304, 504
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 716
BspT107I GGYRCC 1 cut(s) 502
BsrDI GCAATG 2 cut(s) 367, 901
BsrI ACTGG 1 cut(s) 239
BssECI CCNNGG 3 cut(s) 326, 344, 362
BssMI GATC 2 cut(s) 205, 580
BssNAI GTATAC 1 cut(s) 947
BssNI GRCGYC 1 cut(s) 503
BssT1I CCWWGG 2 cut(s) 344, 362
Bst1107I GTATAC 1 cut(s) 947
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 613
Bst6I CTCTTC 3 cut(s) 284, 558, 861
BstACI GRCGYC 1 cut(s) 503
BstBI TTCGAA 1 cut(s) 716
BstDEI CTNAG 3 cut(s) 5, 645, 918
BstF5I GGATG 1 cut(s) 559
BstFNI CGCG 1 cut(s) 475
BstH2I RGCGCY 1 cut(s) 506
BstHHI GCGC 1 cut(s) 505
BstKTI GATC 2 cut(s) 208, 583
BstMAI GTCTC 2 cut(s) 374, 443
BstMBI GATC 2 cut(s) 205, 580
BstMWI GCNNNNNNNGC 3 cut(s) 267, 900, 919
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 3 cut(s) 244, 325, 326
BstUI CGCG 1 cut(s) 475
BstV1I GCAGC 2 cut(s) 903, 986
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 205, 580
BstYI RGATCY 2 cut(s) 205, 580
BstZ17I GTATAC 1 cut(s) 947
BsuRI GGCC 2 cut(s) 72, 1001
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 1 cut(s) 559
BveI ACCTGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 245
CciI TCATGA 1 cut(s) 874
CfoI GCGC 1 cut(s) 505
Cfr9I CCCGGG 1 cut(s) 326
CseI GACGC 1 cut(s) 437
Csp6I GTAC 1 cut(s) 256
CviAII CATG 1 cut(s) 875
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 3 cut(s) 5, 645, 918
DinI GGCGCC 1 cut(s) 504
DpnI GATC 2 cut(s) 207, 582
DpnII GATC 2 cut(s) 205, 580
Eam1104I CTCTTC 3 cut(s) 284, 558, 861
EarI CTCTTC 3 cut(s) 284, 558, 861
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 344, 362
Eco147I AGGCCT 1 cut(s) 72
Eco57I CTGAAG 2 cut(s) 186, 408
Eco88I CYCGRG 1 cut(s) 326
EcoRI GAATTC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 244
EcoT14I CCWWGG 2 cut(s) 344, 362
EgeI GGCGCC 1 cut(s) 504
EheI GGCGCC 1 cut(s) 504
ErhI CCWWGG 2 cut(s) 344, 362
FaeI CATG 1 cut(s) 878
FaiI YATR 5 cut(s) 484, 858, 876, 947, 951
FatI CATG 1 cut(s) 874
FblI GTMKAC 1 cut(s) 946
Fnu4HI GCNGC 6 cut(s) 133, 156, 301, 892, 975, 978
FokI GGATG 1 cut(s) 566
Fsp4HI GCNGC 6 cut(s) 133, 156, 301, 892, 975, 978
FspBI CTAG 6 cut(s) 162, 363, 444, 584, 624, 924
GlaI GCGC 1 cut(s) 504
GluI GCNGC 6 cut(s) 133, 156, 301, 892, 975, 978
GsuI CTGGAG 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 506
HaeIII GGCC 2 cut(s) 72, 1001
HapII CCGG 3 cut(s) 327, 500, 506
HgaI GACGC 1 cut(s) 437
HhaI GCGC 1 cut(s) 505
Hin1I GRCGYC 1 cut(s) 503
Hin1II CATG 1 cut(s) 878
Hin6I GCGC 1 cut(s) 503
HinP1I GCGC 1 cut(s) 503
HinfI GANTC 3 cut(s) 176, 382, 871
HpaII CCGG 3 cut(s) 327, 500, 506
HphI GGTGA 2 cut(s) 171, 554
Hpy166II GTNNAC 1 cut(s) 947
Hpy188I TCNGA 8 cut(s) 59, 175, 205, 232, 417, 646, 801, 841
Hpy188III TCNNGA 8 cut(s) 116, 209, 386, 452, 597, 661, 705, 875
Hpy8I GTNNAC 1 cut(s) 947
Hpy99I CGWCG 7 cut(s) 23, 86, 122, 428, 431, 475, 866
HpyAV CCTTC 4 cut(s) 210, 533, 900, 926
HpyCH4III ACNGT 1 cut(s) 613
HpyCH4IV ACGT 2 cut(s) 393, 861
HpyF10VI GCNNNNNNNGC 3 cut(s) 267, 900, 919
HpyF3I CTNAG 3 cut(s) 5, 645, 918
HpySE526I ACGT 2 cut(s) 393, 861
Hsp92I GRCGYC 1 cut(s) 503
Hsp92II CATG 1 cut(s) 878
HspAI GCGC 1 cut(s) 503
KasI GGCGCC 1 cut(s) 502
Kzo9I GATC 2 cut(s) 205, 580
LmnI GCTCC 4 cut(s) 14, 196, 235, 308
Lsp1109I GCAGC 2 cut(s) 903, 986
LweI GCATC 1 cut(s) 82
MaeI CTAG 6 cut(s) 162, 363, 444, 584, 624, 924
MaeII ACGT 2 cut(s) 393, 861
MaeIII GTNAC 2 cut(s) 339, 607
MalI GATC 2 cut(s) 207, 582
MboI GATC 2 cut(s) 205, 580
MflI RGATCY 2 cut(s) 205, 580
MluCI AATT 7 cut(s) 195, 212, 292, 321, 433, 455, 792
Mly113I GGCGCC 1 cut(s) 503
MlyI GAGTC 1 cut(s) 376
MroXI GAANNNNTTC 1 cut(s) 870
MseI TTAA 2 cut(s) 62, 630
MspA1I CMGCKG 2 cut(s) 300, 977
MspI CCGG 3 cut(s) 327, 500, 506
MspR9I CCNGG 3 cut(s) 246, 327, 328
MvaI CCWGG 1 cut(s) 246
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 3 cut(s) 267, 900, 919
NarI GGCGCC 1 cut(s) 503
NciI CCSGG 2 cut(s) 327, 328
NdeII GATC 2 cut(s) 205, 580
NlaIII CATG 1 cut(s) 878
NlaIV GGNNCC 3 cut(s) 237, 304, 504
NmuCI GTSAC 1 cut(s) 607
NspV TTCGAA 1 cut(s) 716
PagI TCATGA 1 cut(s) 874
PceI AGGCCT 1 cut(s) 72
PdmI GAANNNNTTC 1 cut(s) 870
PfeI GAWTC 2 cut(s) 176, 871
PflMI CCANNNNNTGG 1 cut(s) 245
PfoI TCCNGGA 1 cut(s) 244
PkrI GCNGC 6 cut(s) 134, 157, 302, 893, 976, 979
PleI GAGTC 1 cut(s) 376
PluTI GGCGCC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 3 cut(s) 237, 304, 504
PstNI CAGNNNCTG 1 cut(s) 245
PsuI RGATCY 2 cut(s) 205, 580
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
SaqAI TTAA 2 cut(s) 62, 630
SatI GCNGC 6 cut(s) 133, 156, 301, 892, 975, 978
Sau3AI GATC 2 cut(s) 205, 580
SchI GAGTC 1 cut(s) 376
ScrFI CCNGG 3 cut(s) 246, 327, 328
SfaNI GCATC 1 cut(s) 82
SfoI GGCGCC 1 cut(s) 504
SfuI TTCGAA 1 cut(s) 716
SmaI CCCGGG 1 cut(s) 328
SmlI CTYRAG 1 cut(s) 981
SmoI CTYRAG 1 cut(s) 981
SpeI ACTAGT 1 cut(s) 161
Sse9I AATT 7 cut(s) 195, 212, 292, 321, 433, 455, 792
SseBI AGGCCT 1 cut(s) 72
SsiI CCGC 7 cut(s) 52, 130, 133, 156, 168, 300, 977
SspDI GGCGCC 1 cut(s) 502
SspMI CTAG 6 cut(s) 162, 363, 444, 584, 624, 924
StuI AGGCCT 1 cut(s) 72
StyD4I CCNGG 3 cut(s) 244, 325, 326
StyI CCWWGG 2 cut(s) 344, 362
TaaI ACNGT 1 cut(s) 613
TaiI ACGT 2 cut(s) 396, 864
TaqI TCGA 6 cut(s) 18, 117, 282, 596, 716, 864
TaqII GACCGA 1 cut(s) 981
TasI AATT 7 cut(s) 195, 212, 292, 321, 433, 455, 792
TauI GCSGC 4 cut(s) 135, 158, 303, 980
TfiI GAWTC 2 cut(s) 176, 871
Tru1I TTAA 2 cut(s) 62, 630
Tru9I TTAA 2 cut(s) 62, 630
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 2 cut(s) 891, 974
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 6 cut(s) 456, 471, 749, 833, 863, 894
TspGWI ACGGA 2 cut(s) 161, 393
TspMI CCCGGG 1 cut(s) 326
Van91I CCANNNNNTGG 1 cut(s) 245
XapI RAATTY 1 cut(s) 455
XmaI CCCGGG 1 cut(s) 326
XmaJI CCTAGG 1 cut(s) 362
XmiI GTMKAC 1 cut(s) 946
XmnI GAANNNNTTC 1 cut(s) 870
XspI CTAG 6 cut(s) 162, 363, 444, 584, 624, 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.