pycom07g27120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0012071
Physical Location & Seq
Forward (+)
26916372 .. 26917403
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g27120.1

Sequence Viewer

Length: 1032 bp
ATGCTCTGTTCGGTGCCCGCCACCAAGTCCGGTTCGAACTGGCTGAACCGGCTCCGGTCCAACAAGGGATTCCCGACCGCCGACAATTCCGACCTCGACCACTTCCTTACCCGAAACGCAAACTCTCTCTCTGAATTCCCTGCTCCCAATGTCGTCTCATCGTCCACGGATTCGACTCGGCCGGATTCGGATCGTGTCGGGAATCGCTCCGAATCCTCGTGTCCGAACGGAGACGACCAGGGAGGGGGAATCATCGGAATGATGAGCAACGTTCTATCGGAGCTATTTTTCATGGGCGGCGCCGACGAAAGTTCCAGACTTTCCGGGAAAAAGATTCCTAGAAAGCAAGCAAACCCCAGAGTCTGTGTCGGTTCCACGACCAACTCTAACGGCGACGCCACCGCCACTGCGAATGCAGCGGAGGAGAAGAGCTCGGAAAGTGAAGGAAATATCGAAAATGCCCTCGACAAGGTGTCGTCGGATAACAACAGCTTGGTGGGGAAGAAGAAAAAGAAAGAACTAGGAGGGAATGAGGGTGGTGGGCAATGTGAGGGGGAGGAGGAAGAGGAAGAGGAAGAGAAGGGGGAGATGAAAGGGTATTCGAGGAGCGAAGTGACGGTGATTGATACGAGCTGCGCGGTTTGGAAGACGGAGAAGTTGGTGTTTAGGAGGAAGAATGTGTGGAAAGTTAGGGAGAAGAAGGTCAAAGGGAGGAGCTTTGGGAGACATAAGAGGAAAGTGGTTGTTGAGGAACACCTTGGTGATGACATTGACAAGAAGAAAGCTAAGGTTTCGGTTTCCGCGTTGGATGTTGAAGCTGGTGTGGATGAATGTACAGCTCTCAACTCCATTCAAGTAAGATACAAAGATTCTGTCTTGATTAATTTGCTAATTTGGTTTCATATTTCCTTCTCGATTGTGCTTAATTTTTGTGATCTTTGTTTATCTACGAATGCGAATATCGGATTAACAATTATTGCATGTGTTGATTTGTTTGGTATGGAAATGAAGTGGTTGTGTGGATGGCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

344

Amino Acids

37.47

Weight (kDa)

5.98

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24500
fragaria_vesca FvH4_7g32890 FvH4_7g32890
malus_domestica MD01G1228100.v1.1 MD07G1298800.v1.1
prunus_persica Prupe.2G318600_v2.0.a1
pyrus_communis pycom01g23630 pycom07g27120
rosa_chinensis RchiOBHm_Chr1g0382841
rosa_laevigata RLG00000026155
rosa_multiflora Rmu_co8155456.1_g000001 Rmu_sc0003389.1_g000012
rosa_roxburghii Rroxscaffold_4G00277850
rosa_rugosa Rorug01G0436700
rosa_samantha Rh1AG461700 Rh1BG418700 Rh1CG432300 Rh1DG450800
rosa_wichuraiana Rw1G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 13, 299
AccII CGCG 2 cut(s) 638, 803
AciI CCGC 7 cut(s) 18, 78, 297, 402, 419, 638, 801
AclI AACGTT 1 cut(s) 270
AclWI GGATC 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 179
AcsI RAATTY 1 cut(s) 134
AcyI GRCGYC 2 cut(s) 300, 396
AfaI GTAC 1 cut(s) 835
AfiI CCNNNNNNNGG 2 cut(s) 244, 469
AgsI TTSAA 2 cut(s) 815, 854
AhdI GACNNNNNGTC 1 cut(s) 472
AjnI CCWGG 1 cut(s) 237
AjuI GAANNNNNNNTTGG 2 cut(s) 53, 85
AleI CACNNNNGTG 1 cut(s) 759
AluBI AGCT 8 cut(s) 283, 432, 492, 633, 717, 785, 818, 839
AluI AGCT 8 cut(s) 283, 432, 492, 633, 717, 785, 818, 839
Alw21I GWGCWC 1 cut(s) 434
Alw26I GTCTC 3 cut(s) 160, 225, 718
AlwI GGATC 1 cut(s) 198
AlwNI CAGNNNCTG 1 cut(s) 363
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 2 cut(s) 416, 633
ApoI RAATTY 1 cut(s) 134
ArsI GACNNNNNNTTYG 2 cut(s) 858, 890
AseI ATTAAT 1 cut(s) 882
AspLEI GCGC 3 cut(s) 302, 638, 1029
AspS9I GGNCC 1 cut(s) 57
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 631, 773
AsuII TTCGAA 1 cut(s) 35
AvaII GGWCC 1 cut(s) 57
BaeGI GKGCMC 1 cut(s) 18
BanI GGYRCC 2 cut(s) 13, 299
BanII GRGCYC 1 cut(s) 434
BauI CACGAG 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 653
Bbv12I GWGCWC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 428, 620
BccI CCATC 1 cut(s) 1017
BceAI ACGGC 1 cut(s) 406
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 160, 225, 718
BfaI CTAG 3 cut(s) 339, 521, 1030
BfoI RGCGCY 2 cut(s) 303, 1030
BisI GCNGC 3 cut(s) 298, 417, 634
BlsI GCNGC 3 cut(s) 299, 418, 635
Bme1390I CCNGG 2 cut(s) 239, 325
Bme18I GGWCC 1 cut(s) 57
BmeRI GACNNNNNGTC 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 4 cut(s) 15, 53, 301, 373
BmrFI CCNGG 2 cut(s) 239, 325
BpiI GAAGAC 1 cut(s) 653
BplI GAGNNNNNCTC 2 cut(s) 416, 448
Bpu10I CCTNAGC 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 325
BsaBI GATNNNNATC 1 cut(s) 189
BsaHI GRCGYC 2 cut(s) 300, 396
BsaJI CCNNGG 3 cut(s) 165, 238, 757
BsaWI WCCGGW 2 cut(s) 29, 54
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 469
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 44
Bse3DI GCAATG 1 cut(s) 551
Bse8I GATNNNNATC 1 cut(s) 189
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 3 cut(s) 165, 238, 757
BseGI GGATG 3 cut(s) 814, 832, 1028
BseJI GATNNNNATC 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 244, 469
BseMI GCAATG 1 cut(s) 551
BseNI ACTGG 1 cut(s) 44
BseRI GAGGAG 4 cut(s) 437, 572, 619, 727
BseSI GKGCMC 1 cut(s) 18
BseX3I CGGCCG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 428, 620
Bsh1236I CGCG 2 cut(s) 638, 803
Bsh1285I CGRYCG 2 cut(s) 78, 182
BshFI GGCC 1 cut(s) 181
BshNI GGYRCC 2 cut(s) 13, 299
BsiEI CGRYCG 2 cut(s) 78, 182
BsiHKAI GWGCWC 1 cut(s) 434
BsiSI CCGG 5 cut(s) 30, 49, 55, 182, 324
BslI CCNNNNNNNGG 2 cut(s) 244, 469
BsmAI GTCTC 3 cut(s) 160, 225, 718
BsmBI CGTCTC 2 cut(s) 160, 225
BsmI GAATGC 2 cut(s) 418, 958
BsnI GGCC 1 cut(s) 181
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 18, 434
Bsp1407I TGTACA 1 cut(s) 833
Bsp143I GATC 2 cut(s) 190, 934
BspACI CCGC 7 cut(s) 18, 78, 297, 402, 419, 638, 801
BspANI GGCC 1 cut(s) 181
BspFNI CGCG 2 cut(s) 638, 803
BspLI GGNNCC 4 cut(s) 15, 53, 301, 373
BspPI GGATC 1 cut(s) 198
BspQI GCTCTTC 1 cut(s) 422
BspT104I TTCGAA 1 cut(s) 35
BspT107I GGYRCC 2 cut(s) 13, 299
BsrDI GCAATG 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 48
BsrGI TGTACA 1 cut(s) 833
BsrI ACTGG 1 cut(s) 44
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 3 cut(s) 165, 238, 757
BssMI GATC 2 cut(s) 190, 934
BssNI GRCGYC 2 cut(s) 300, 396
BssSI CACGAG 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 757
Bst2BI CACGAG 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 619
Bst6I CTCTTC 4 cut(s) 422, 558, 564, 570
BstACI GRCGYC 2 cut(s) 300, 396
BstAUI TGTACA 1 cut(s) 833
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 2 cut(s) 18, 348
BstDEI CTNAG 1 cut(s) 786
BstDSI CCRYGG 1 cut(s) 165
BstENI CCTNNNNNAGG 1 cut(s) 467
BstF5I GGATG 3 cut(s) 814, 832, 1028
BstFNI CGCG 2 cut(s) 638, 803
BstH2I RGCGCY 2 cut(s) 303, 1030
BstHHI GCGC 3 cut(s) 302, 638, 1029
BstKTI GATC 2 cut(s) 193, 937
BstMAI GTCTC 3 cut(s) 160, 225, 718
BstMBI GATC 2 cut(s) 190, 934
BstMCI CGRYCG 2 cut(s) 78, 182
BstMWI GCNNNNNNNGC 2 cut(s) 49, 416
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 1 cut(s) 984
BstSCI CCNGG 2 cut(s) 237, 323
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 2 cut(s) 638, 803
BstV1I GCAGC 2 cut(s) 428, 620
BstV2I GAAGAC 1 cut(s) 653
BstZI CGGCCG 1 cut(s) 179
BsuRI GGCC 1 cut(s) 181
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 3 cut(s) 814, 832, 1028
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 1 cut(s) 405
Cac8I GCNNGC 2 cut(s) 18, 348
CaiI CAGNNNCTG 1 cut(s) 363
CfoI GCGC 3 cut(s) 302, 638, 1029
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 57
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 834
CviAII CATG 2 cut(s) 292, 981
CviQI GTAC 1 cut(s) 834
DdeI CTNAG 1 cut(s) 786
DinI GGCGCC 1 cut(s) 301
DpnI GATC 2 cut(s) 192, 936
DpnII GATC 2 cut(s) 190, 934
DriI GACNNNNNGTC 1 cut(s) 472
EaeI YGGCCR 1 cut(s) 179
EagI CGGCCG 1 cut(s) 179
Eam1104I CTCTTC 4 cut(s) 422, 558, 564, 570
Eam1105I GACNNNNNGTC 1 cut(s) 472
EarI CTCTTC 4 cut(s) 422, 558, 564, 570
Ecl136II GAGCTC 1 cut(s) 432
EclXI CGGCCG 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 757
Eco24I GRGCYC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 57
Eco52I CGGCCG 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 432
EcoICRI GAGCTC 1 cut(s) 432
EcoNI CCTNNNNNAGG 1 cut(s) 467
EcoRI GAATTC 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 757
EcoT38I GRGCYC 1 cut(s) 434
EgeI GGCGCC 1 cut(s) 301
EheI GGCGCC 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 757
Esp3I CGTCTC 2 cut(s) 160, 225
FaeI CATG 2 cut(s) 295, 984
FaiI YATR 5 cut(s) 293, 729, 903, 982, 1001
FatI CATG 2 cut(s) 291, 980
FauI CCCGC 1 cut(s) 25
Fnu4HI GCNGC 3 cut(s) 298, 417, 634
FokI GGATG 2 cut(s) 821, 839
FriOI GRGCYC 1 cut(s) 434
Fsp4HI GCNGC 3 cut(s) 298, 417, 634
FspBI CTAG 3 cut(s) 339, 521, 1030
GlaI GCGC 3 cut(s) 301, 637, 1028
GluI GCNGC 3 cut(s) 298, 417, 634
HaeII RGCGCY 2 cut(s) 303, 1030
HaeIII GGCC 1 cut(s) 181
HapII CCGG 5 cut(s) 30, 49, 55, 182, 324
HgaI GACGC 1 cut(s) 404
HhaI GCGC 3 cut(s) 302, 638, 1029
Hin1I GRCGYC 2 cut(s) 300, 396
Hin1II CATG 2 cut(s) 295, 984
Hin6I GCGC 3 cut(s) 300, 636, 1027
HinP1I GCGC 3 cut(s) 300, 636, 1027
HpaII CCGG 5 cut(s) 30, 49, 55, 182, 324
HphI GGTGA 2 cut(s) 631, 773
Hpy166II GTNNAC 1 cut(s) 165
Hpy188III TCNNGA 5 cut(s) 73, 199, 315, 877, 913
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 3 cut(s) 308, 398, 481
HpyAV CCTTC 4 cut(s) 437, 574, 694, 919
HpyCH4III ACNGT 1 cut(s) 619
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 416, 980
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 416
HpyF3I CTNAG 1 cut(s) 786
HpySE526I ACGT 1 cut(s) 270
Hsp92I GRCGYC 2 cut(s) 300, 396
Hsp92II CATG 2 cut(s) 295, 984
HspAI GCGC 3 cut(s) 300, 636, 1027
KasI GGCGCC 1 cut(s) 299
Kzo9I GATC 2 cut(s) 190, 934
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 6 cut(s) 57, 148, 212, 280, 606, 714
Lsp1109I GCAGC 2 cut(s) 428, 620
MaeI CTAG 3 cut(s) 339, 521, 1030
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 613
MalI GATC 2 cut(s) 192, 936
MboI GATC 2 cut(s) 190, 934
MhlI GDGCHC 2 cut(s) 18, 434
MluCI AATT 6 cut(s) 85, 134, 883, 891, 925, 972
Mly113I GGCGCC 1 cut(s) 300
MlyI GAGTC 2 cut(s) 169, 369
MmeI TCCRAC 4 cut(s) 84, 114, 459, 786
MseI TTAA 3 cut(s) 882, 924, 968
MslI CAYNNNNRTG 2 cut(s) 257, 759
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 5 cut(s) 30, 49, 55, 182, 324
MspR9I CCNGG 2 cut(s) 239, 325
Mva1269I GAATGC 2 cut(s) 418, 958
MvaI CCWGG 1 cut(s) 239
MvnI CGCG 2 cut(s) 638, 803
MwoI GCNNNNNNNGC 2 cut(s) 49, 416
NarI GGCGCC 1 cut(s) 300
NciI CCSGG 1 cut(s) 325
NdeII GATC 2 cut(s) 190, 934
NlaIII CATG 2 cut(s) 295, 984
NlaIV GGNNCC 4 cut(s) 15, 53, 301, 373
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 613
NspI RCATGY 1 cut(s) 984
NspV TTCGAA 1 cut(s) 35
OliI CACNNNNGTG 1 cut(s) 759
PciSI GCTCTTC 1 cut(s) 422
PcsI WCGNNNNNNNCGW 1 cut(s) 800
PctI GAATGC 2 cut(s) 418, 958
PfeI GAWTC 8 cut(s) 69, 170, 185, 202, 212, 249, 334, 869
PfoI TCCNGGA 1 cut(s) 323
PkrI GCNGC 3 cut(s) 299, 418, 635
PleI GAGTC 2 cut(s) 169, 368
PluTI GGCGCC 1 cut(s) 303
PpsI GAGTC 2 cut(s) 169, 368
PshBI ATTAAT 1 cut(s) 882
Psp124BI GAGCTC 1 cut(s) 434
Psp1406I AACGTT 1 cut(s) 270
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspN4I GGNNCC 4 cut(s) 15, 53, 301, 373
PspPI GGNCC 1 cut(s) 57
PstNI CAGNNNCTG 1 cut(s) 363
RsaI GTAC 1 cut(s) 835
RsaNI GTAC 1 cut(s) 834
RseI CAYNNNNRTG 2 cut(s) 257, 759
SacI GAGCTC 1 cut(s) 434
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 3 cut(s) 882, 924, 968
SatI GCNGC 3 cut(s) 298, 417, 634
Sau3AI GATC 2 cut(s) 190, 934
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 2 cut(s) 169, 369
ScrFI CCNGG 2 cut(s) 239, 325
SduI GDGCHC 2 cut(s) 18, 434
SfoI GGCGCC 1 cut(s) 301
SfuI TTCGAA 1 cut(s) 35
SinI GGWCC 1 cut(s) 57
SmiMI CAYNNNNRTG 2 cut(s) 257, 759
Sse9I AATT 6 cut(s) 85, 134, 883, 891, 925, 972
SsiI CCGC 7 cut(s) 18, 78, 297, 402, 419, 638, 801
SspDI GGCGCC 1 cut(s) 299
SspMI CTAG 3 cut(s) 339, 521, 1030
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 237, 323
StyI CCWWGG 1 cut(s) 757
TaaI ACNGT 1 cut(s) 619
TaiI ACGT 1 cut(s) 273
TaqI TCGA 7 cut(s) 35, 96, 173, 453, 465, 602, 914
TasI AATT 6 cut(s) 85, 134, 883, 891, 925, 972
TatI WGTACW 1 cut(s) 833
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 8 cut(s) 69, 170, 185, 202, 212, 249, 334, 869
Tru1I TTAA 3 cut(s) 882, 924, 968
Tru9I TTAA 3 cut(s) 882, 924, 968
TscAI CASTG 1 cut(s) 412
TseFI GTSAC 1 cut(s) 613
TseI GCWGC 2 cut(s) 416, 633
Tsp45I GTSAC 1 cut(s) 613
TspDTI ATGAA 5 cut(s) 280, 605, 843, 890, 1022
TspGWI ACGGA 3 cut(s) 182, 243, 665
TspRI CASTG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 57
VspI ATTAAT 1 cut(s) 882
XagI CCTNNNNNAGG 1 cut(s) 467
XapI RAATTY 1 cut(s) 134
XceI RCATGY 1 cut(s) 984
XspI CTAG 3 cut(s) 339, 521, 1030
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.