Rh1DG450800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012071
Physical Location & Seq
Forward (+)
65884309 .. 65886956
2648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG450800.1

Sequence Viewer

Length: 762 bp
ATGCTCTGCTCGGTCCGCCGGCCTAACTGGCTCGACCGGCTCCGGTCCAACAAGGGCTTCCCTGCCGGCGACAACCTTGACCTCGACCACTTCCTTAGACATAACCCTAACTCCTCCTCGGAATCCCCGAGTCCCAATGCAGAGTCAACCGAGTCAATTCCACCGGTCTCAAATCGACCCGAATCTTCCAATCCGACCCGAGACGACGGAAAAGGAGAGGCATTGCTGGGCCTGATGAGCACCGCCATCTCCGAGCTGTTCTTTATCGACGGCTACGAAGAAAGCTCGAGAATTTCCGGCAAAAAAGTCCCCAGAAAACAAACCCACCCCAGAGTTTGTGTCACCTCCTCCACCACCAACTCCAACAGCAAAGAGAACAAGAGCTCGGGCAGCACCAGAAATGGCATACACGACTTTACAGCTATCACATCGTTGAATTCGGACAACAACAAAGAACTGAATGAGGAGGAAGAGTTGGAAGCGAAAGAGGAGAGAGAGCTGAAGGGGTATTCGAAGAGCGAGGTAACGGTGATAGACACGAGCTGTGAGGTTTGGAAGACGGAGAAGGTGGTGTTTAGGAGGAAGAGTATGTGGAAAGTGAGGGAGAAGAAGAGCAAGGTGAGGAGCTTTGGGAGGAATAAGAGGAAAGTGGTGAGCGGTGAGGAAGGTGATGATGGCATTGAGGAGAAGAAGAAGGAAGCAAAGGTTTTGGATTGTGAAGGGGATCAATGTATATCTCTCAACCCCATTGAAGTAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

28.42

Weight (kDa)

6.93

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012071)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24500
fragaria_vesca FvH4_7g32890 FvH4_7g32890
malus_domestica MD01G1228100.v1.1 MD07G1298800.v1.1
prunus_persica Prupe.2G318600_v2.0.a1
pyrus_communis pycom01g23630 pycom07g27120
rosa_chinensis RchiOBHm_Chr1g0382841
rosa_laevigata RLG00000026155
rosa_multiflora Rmu_co8155456.1_g000001 Rmu_sc0003389.1_g000012
rosa_roxburghii Rroxscaffold_4G00277850
rosa_rugosa Rorug01G0436700
rosa_samantha Rh1AG461700 Rh1BG418700 Rh1CG432300 Rh1DG450800
rosa_wichuraiana Rw1G041010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 657
AciI CCGC 3 cut(s) 16, 243, 657
AclWI GGATC 1 cut(s) 732
AcsI RAATTY 2 cut(s) 291, 436
AcuI CTGAAG 1 cut(s) 521
AgeI ACCGGT 1 cut(s) 163
AgsI TTSAA 2 cut(s) 436, 752
AjuI GAANNNNNNNTTGG 2 cut(s) 41, 73
AluBI AGCT 7 cut(s) 256, 285, 384, 422, 499, 543, 627
AluI AGCT 7 cut(s) 256, 285, 384, 422, 499, 543, 627
Alw21I GWGCWC 2 cut(s) 242, 386
Alw26I GTCTC 2 cut(s) 172, 195
AlwI GGATC 1 cut(s) 732
Ama87I CYCGRG 4 cut(s) 127, 198, 286, 385
AoxI GGCC 2 cut(s) 20, 229
ApeKI GCWGC 1 cut(s) 390
ApoI RAATTY 2 cut(s) 291, 436
AsiGI ACCGGT 1 cut(s) 163
AspS9I GGNCC 3 cut(s) 13, 45, 229
AsuHPI GGTGA 6 cut(s) 334, 541, 631, 664, 671, 680
AsuII TTCGAA 1 cut(s) 512
AvaI CYCGRG 4 cut(s) 127, 198, 286, 385
AvaII GGWCC 2 cut(s) 13, 45
BanII GRGCYC 1 cut(s) 386
BauI CACGAG 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 563
Bbv12I GWGCWC 2 cut(s) 242, 386
BbvI GCAGC 1 cut(s) 402
BccI CCATC 2 cut(s) 254, 668
BceAI ACGGC 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 172, 195
BglI GCCNNNNNGGC 1 cut(s) 28
BisI GCNGC 1 cut(s) 391
BlsI GCNGC 1 cut(s) 392
Bme18I GGWCC 2 cut(s) 13, 45
BmeT110I CYCGRG 4 cut(s) 127, 198, 286, 385
BmgT120I GGNCC 3 cut(s) 13, 45, 229
BmiI GGNNCC 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 563
Bpu14I TTCGAA 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 117
BsaWI WCCGGW 2 cut(s) 42, 163
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 458, 488, 571, 601
Bse118I RCCGGY 4 cut(s) 18, 36, 65, 163
Bse1I ACTGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 221
BseDI CCNNGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 221
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 7 cut(s) 103, 106, 337, 479, 503, 637, 698
BseXI GCAGC 1 cut(s) 402
BseYI CCCAGC 1 cut(s) 226
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 2 cut(s) 22, 231
BshTI ACCGGT 1 cut(s) 163
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 242, 386
BsiHKCI CYCGRG 4 cut(s) 127, 198, 286, 385
BsiSI CCGG 6 cut(s) 19, 37, 43, 66, 164, 297
BslFI GGGAC 2 cut(s) 117, 293
BsmAI GTCTC 2 cut(s) 172, 195
BsmBI CGTCTC 1 cut(s) 195
BsmFI GGGAC 2 cut(s) 117, 293
BsnI GGCC 2 cut(s) 22, 231
Bso31I GGTCTC 1 cut(s) 172
BsoBI CYCGRG 4 cut(s) 127, 198, 286, 385
Bsp119I TTCGAA 1 cut(s) 512
Bsp1286I GDGCHC 2 cut(s) 242, 386
Bsp143I GATC 1 cut(s) 724
BspACI CCGC 3 cut(s) 16, 243, 657
BspANI GGCC 2 cut(s) 22, 231
BspLI GGNNCC 1 cut(s) 41
BspPI GGATC 1 cut(s) 732
BspQI GCTCTTC 2 cut(s) 509, 605
BspT104I TTCGAA 1 cut(s) 512
BspTNI GGTCTC 1 cut(s) 172
BsrBI CCGCTC 1 cut(s) 657
BsrDI GCAATG 1 cut(s) 221
BsrFI RCCGGY 4 cut(s) 18, 36, 65, 163
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 4 cut(s) 18, 36, 65, 163
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 1 cut(s) 724
BssSI CACGAG 1 cut(s) 538
Bst2BI CACGAG 1 cut(s) 538
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 4 cut(s) 465, 509, 578, 605
BstBI TTCGAA 1 cut(s) 512
BstC8I GCNNGC 2 cut(s) 20, 67
BstDEI CTNAG 1 cut(s) 95
BstKTI GATC 1 cut(s) 727
BstMAI GTCTC 2 cut(s) 172, 195
BstMBI GATC 1 cut(s) 724
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 5 cut(s) 15, 28, 37, 237, 390
BstV1I GCAGC 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 563
BsuRI GGCC 2 cut(s) 22, 231
Cac8I GCNNGC 2 cut(s) 20, 67
Cfr10I RCCGGY 4 cut(s) 18, 36, 65, 163
Cfr13I GGNCC 3 cut(s) 13, 45, 229
CpoI CGGWCCG 1 cut(s) 13
CspAI ACCGGT 1 cut(s) 163
CspI CGGWCCG 1 cut(s) 13
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 726
DpnII GATC 1 cut(s) 724
Eam1104I CTCTTC 4 cut(s) 465, 509, 578, 605
EarI CTCTTC 4 cut(s) 465, 509, 578, 605
EciI GGCGGA 1 cut(s) 5
Ecl136II GAGCTC 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 386
Eco31I GGTCTC 1 cut(s) 172
Eco47I GGWCC 2 cut(s) 13, 45
Eco53kI GAGCTC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 521
Eco88I CYCGRG 4 cut(s) 127, 198, 286, 385
EcoICRI GAGCTC 1 cut(s) 384
EcoRI GAATTC 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 386
Esp3I CGTCTC 1 cut(s) 195
FaiI YATR 4 cut(s) 102, 407, 590, 734
FaqI GGGAC 2 cut(s) 117, 293
Fnu4HI GCNGC 1 cut(s) 391
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 1 cut(s) 391
GluI GCNGC 1 cut(s) 391
GsaI CCCAGC 1 cut(s) 230
HaeIII GGCC 2 cut(s) 22, 231
HapII CCGG 6 cut(s) 19, 37, 43, 66, 164, 297
HincII GTYRAC 1 cut(s) 147
HindII GTYRAC 1 cut(s) 147
HinfI GANTC 5 cut(s) 122, 130, 143, 152, 182
HpaII CCGG 6 cut(s) 19, 37, 43, 66, 164, 297
HphI GGTGA 6 cut(s) 334, 541, 631, 664, 671, 680
Hpy166II GTNNAC 1 cut(s) 147
Hpy188I TCNGA 4 cut(s) 121, 195, 253, 442
Hpy188III TCNNGA 1 cut(s) 288
Hpy8I GTNNAC 1 cut(s) 147
Hpy99I CGWCG 2 cut(s) 209, 272
HpyAV CCTTC 5 cut(s) 496, 559, 659, 688, 713
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4V TGCA 1 cut(s) 140
HpyF10VI GCNNNNNNNGC 5 cut(s) 15, 28, 37, 237, 390
HpyF3I CTNAG 1 cut(s) 95
KroI GCCGGC 2 cut(s) 18, 65
KroNI GCCGGC 2 cut(s) 20, 67
Kzo9I GATC 1 cut(s) 724
LguI GCTCTTC 2 cut(s) 509, 605
LmnI GCTCC 2 cut(s) 45, 624
Lsp1109I GCAGC 1 cut(s) 402
MaeIII GTNAC 2 cut(s) 340, 523
MalI GATC 1 cut(s) 726
MbiI CCGCTC 1 cut(s) 657
MboI GATC 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 242, 386
MluCI AATT 3 cut(s) 156, 291, 436
MlyI GAGTC 3 cut(s) 139, 152, 161
MmeI TCCRAC 4 cut(s) 72, 218, 387, 456
MroNI GCCGGC 2 cut(s) 18, 65
MspI CCGG 6 cut(s) 19, 37, 43, 66, 164, 297
MwoI GCNNNNNNNGC 5 cut(s) 15, 28, 37, 237, 390
NaeI GCCGGC 2 cut(s) 20, 67
NdeII GATC 1 cut(s) 724
NgoMIV GCCGGC 2 cut(s) 18, 65
NlaIV GGNNCC 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 340
NspV TTCGAA 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 286
PciSI GCTCTTC 2 cut(s) 509, 605
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 273
PdiI GCCGGC 2 cut(s) 20, 67
PfeI GAWTC 2 cut(s) 122, 182
PinAI ACCGGT 1 cut(s) 163
PkrI GCNGC 1 cut(s) 392
PleI GAGTC 3 cut(s) 138, 151, 160
PpsI GAGTC 3 cut(s) 138, 151, 160
Psp124BI GAGCTC 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 3 cut(s) 13, 45, 229
Rsr2I CGGWCCG 1 cut(s) 13
RsrII CGGWCCG 1 cut(s) 13
SacI GAGCTC 1 cut(s) 386
SapI GCTCTTC 2 cut(s) 509, 605
SatI GCNGC 1 cut(s) 391
Sau3AI GATC 1 cut(s) 724
Sau96I GGNCC 3 cut(s) 13, 45, 229
SchI GAGTC 3 cut(s) 139, 152, 161
SduI GDGCHC 2 cut(s) 242, 386
Sfr274I CTCGAG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 512
SinI GGWCC 2 cut(s) 13, 45
SlaI CTCGAG 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 3 cut(s) 156, 291, 436
SsiI CCGC 3 cut(s) 16, 243, 657
SstI GAGCTC 1 cut(s) 386
TaaI ACNGT 1 cut(s) 529
TaqI TCGA 6 cut(s) 33, 84, 175, 267, 287, 512
TasI AATT 3 cut(s) 156, 291, 436
TfiI GAWTC 2 cut(s) 122, 182
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 390
Tsp45I GTSAC 1 cut(s) 340
TspGWI ACGGA 2 cut(s) 222, 575
VpaK11BI GGWCC 2 cut(s) 13, 45
XapI RAATTY 2 cut(s) 291, 436
XhoI CTCGAG 1 cut(s) 286
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.